Rorug01G0293500

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
40922249 .. 40927045
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0293500.1

Sequence Viewer

Length: 990 bp
ATGGTGTCTGTGAACCCAAACCCAGCACCTCAGGGTTTCTACTTATTCGATCCCACCAACATGGGCCTCCCGGGCCTCAATTCCATGCCGCCGCCCACCACGCCTTCTACGACCACCACCACCACGTCGTCCGCGCCCCAAAACGCCGCGTCGTTGGCCGAGGATCTGAGCAAGAAGATCCGGAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGACCGCGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATCCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGCGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATACCCACAAAAAGCTCCTAAAAGTGCTCCAGTAGCATCTCAAGTTGTTGTGCCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATGCTTACCAGCCAGACTCCTCATTTGTGCTTGGCACTCCAGTTACCAGTGCAAGTTTACCTTCCTGGAGTCATAGTTATGTGCCTCCAGTCAATGCATCACAAATAACTAAAGATGATGGAAAGCTAGCTGGTTCAACAGATGCACAGAACTCTTGCTACAGTAGTAGTAACGAAAGCAAGCCTACAACTCGCCAGCCACAGAGAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTCATCGGCAGTGTTTTTGACCCCAGTTCGACTAGTCATTTGGAGAGACTGAAACAAATGGACCCTATAAATTTGGAGACAGCACTTTTGTTGATGCGAAATCTATCCATTAATTTAACAAGTCCCGAGTTTGAGGATCATAGAAGGATACTTTTATCATATGAAACAAAATCTGAGAAAGCTAAACCTGAGAACAGTTGCAACTTTTCTTGCCATGGTAAATCGGAGAATGCCATCCTATCTACTTAG

Protein Analysis

329

Amino Acids

36.43

Weight (kDa)

9.04

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 115 6.6e-12 Myb-like DNA-binding domain
RVE6 PF24904 239 - 301 2.4e-35 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 134, 149, 270
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 5 cut(s) 89, 92, 132, 147, 268
AclWI GGATC 4 cut(s) 44, 171, 172, 885
AcoI YGGCCR 2 cut(s) 156, 392
AcsI RAATTY 2 cut(s) 740, 811
AfaI GTAC 2 cut(s) 341, 381
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 5 cut(s) 287, 349, 476, 497, 642
AhlI ACTAGT 1 cut(s) 773
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 206, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 7 cut(s) 216, 251, 259, 431, 631, 635, 923
AluI AGCT 7 cut(s) 216, 251, 259, 431, 631, 635, 923
Alw21I GWGCWC 2 cut(s) 234, 445
Alw26I GTCTC 2 cut(s) 781, 812
AlwI GGATC 4 cut(s) 44, 171, 172, 885
Ama87I CYCGRG 2 cut(s) 70, 866
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 4 cut(s) 64, 73, 156, 392
ApoI RAATTY 2 cut(s) 740, 811
ArsI GACNNNNNNTTYG 6 cut(s) 512, 544, 763, 795, 811, 843
AseI ATTAAT 1 cut(s) 852
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 64, 73, 802
AsuC2I CCSGG 2 cut(s) 71, 72
AsuNHI GCTAGC 1 cut(s) 631
AvaI CYCGRG 2 cut(s) 70, 866
AvaII GGWCC 1 cut(s) 802
AxyI CCTNAGG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 234, 445
BccI CCATC 2 cut(s) 617, 983
BciT130I CCWGG 2 cut(s) 208, 571
BciVI GTATCC 1 cut(s) 882
BcnI CCSGG 2 cut(s) 71, 72
BcoDI GTCTC 2 cut(s) 781, 812
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 3 cut(s) 245, 632, 774
BfmI CTRYAG 1 cut(s) 664
BfuI GTATCC 1 cut(s) 882
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 3 cut(s) 89, 92, 147
BlsI GCNGC 3 cut(s) 90, 93, 148
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 4 cut(s) 71, 72, 208, 571
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 2 cut(s) 70, 866
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 64, 73, 802
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 4 cut(s) 71, 72, 208, 571
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 4 cut(s) 461, 611, 637, 825
BmtI GCTAGC 1 cut(s) 635
BmuI ACTGGG 1 cut(s) 759
BpmI CTGGAG 5 cut(s) 239, 429, 528, 576, 592
Bpu10I CCTNAGC 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 71, 72
BsaAI YACGTR 1 cut(s) 323
BsaJI CCNNGG 5 cut(s) 70, 159, 207, 389, 955
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 6 cut(s) 278, 446, 545, 552, 593, 765
Bse21I CCTNAGG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 2 cut(s) 208, 571
BseDI CCNNGG 5 cut(s) 70, 159, 207, 389, 955
BseGI GGATG 2 cut(s) 412, 975
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 5 cut(s) 44, 158, 743, 906, 921
BseNI ACTGG 6 cut(s) 278, 446, 545, 552, 593, 765
BseRI GAGGAG 3 cut(s) 375, 378, 514
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 3 cut(s) 134, 149, 270
BshFI GGCC 4 cut(s) 66, 75, 158, 394
BsiHKAI GWGCWC 2 cut(s) 234, 445
BsiHKCI CYCGRG 2 cut(s) 70, 866
BsiSI CCGG 2 cut(s) 71, 181
BslFI GGGAC 2 cut(s) 379, 849
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 781, 812
BsmFI GGGAC 2 cut(s) 379, 849
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 4 cut(s) 66, 75, 158, 394
BsoBI CYCGRG 2 cut(s) 70, 866
Bsp1286I GDGCHC 2 cut(s) 234, 445
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 49, 163, 177, 877
Bsp19I CCATGG 1 cut(s) 955
BspACI CCGC 5 cut(s) 89, 92, 132, 147, 268
BspANI GGCC 4 cut(s) 66, 75, 158, 394
BspCNI CTCAG 5 cut(s) 43, 159, 742, 907, 922
BspEI TCCGGA 1 cut(s) 180
BspFNI CGCG 3 cut(s) 134, 149, 270
BspLI GGNNCC 1 cut(s) 804
BspOI GCTAGC 1 cut(s) 635
BspPI GGATC 4 cut(s) 44, 171, 172, 885
BsrI ACTGG 6 cut(s) 278, 446, 545, 552, 593, 765
BssECI CCNNGG 5 cut(s) 70, 159, 207, 389, 955
BssMI GATC 4 cut(s) 49, 163, 177, 877
BssT1I CCWWGG 1 cut(s) 955
Bst2UI CCWGG 2 cut(s) 208, 571
Bst4CI ACNGT 3 cut(s) 310, 668, 938
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 4 cut(s) 374, 633, 686, 701
BstDEI CTNAG 6 cut(s) 30, 167, 729, 915, 930, 987
BstDSI CCRYGG 1 cut(s) 955
BstF5I GGATG 2 cut(s) 412, 975
BstFNI CGCG 3 cut(s) 134, 149, 270
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 4 cut(s) 52, 166, 180, 880
BstMAI GTCTC 2 cut(s) 781, 812
BstMBI GATC 4 cut(s) 49, 163, 177, 877
BstMWI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
BstNI CCWGG 2 cut(s) 208, 571
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 4 cut(s) 69, 70, 206, 569
BstSFI CTRYAG 1 cut(s) 664
BstSNI TACGTA 1 cut(s) 323
BstUI CGCG 3 cut(s) 134, 149, 270
BstX2I RGATCY 2 cut(s) 163, 177
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 2 cut(s) 163, 177
Bsu36I CCTNAGG 1 cut(s) 30
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 4 cut(s) 66, 75, 158, 394
BtgI CCRYGG 1 cut(s) 955
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 412, 975
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 559, 757
Cac8I GCNNGC 4 cut(s) 374, 633, 686, 701
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 64, 73, 802
Cfr9I CCCGGG 1 cut(s) 70
CseI GACGC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 340, 380
CviAII CATG 6 cut(s) 61, 85, 329, 377, 500, 956
CviQI GTAC 2 cut(s) 340, 380
DdeI CTNAG 6 cut(s) 30, 167, 729, 915, 930, 987
DpnI GATC 4 cut(s) 51, 165, 179, 879
DpnII GATC 4 cut(s) 49, 163, 177, 877
EaeI YGGCCR 2 cut(s) 156, 392
Eco105I TACGTA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 802
Eco81I CCTNAGG 1 cut(s) 30
Eco88I CYCGRG 2 cut(s) 70, 866
EcoRII CCWGG 2 cut(s) 206, 569
EcoT14I CCWWGG 1 cut(s) 955
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 955
FaeI CATG 6 cut(s) 64, 88, 332, 380, 503, 959
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 2 cut(s) 379, 849
FatI CATG 6 cut(s) 60, 84, 328, 376, 499, 955
FauNDI CATATG 1 cut(s) 901
Fnu4HI GCNGC 3 cut(s) 89, 92, 147
FokI GGATG 2 cut(s) 399, 962
Fsp4HI GCNGC 3 cut(s) 89, 92, 147
FspBI CTAG 3 cut(s) 245, 632, 774
GlaI GCGC 1 cut(s) 135
GluI GCNGC 3 cut(s) 89, 92, 147
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 5 cut(s) 239, 429, 528, 576, 592
HaeIII GGCC 4 cut(s) 66, 75, 158, 394
HapII CCGG 2 cut(s) 71, 181
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 136
Hin1II CATG 6 cut(s) 64, 88, 332, 380, 503, 959
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 3 cut(s) 476, 521, 574
HpaII CCGG 2 cut(s) 71, 181
Hpy166II GTNNAC 2 cut(s) 13, 563
Hpy188I TCNGA 4 cut(s) 168, 357, 916, 967
Hpy188III TCNNGA 4 cut(s) 181, 245, 316, 866
Hpy8I GTNNAC 2 cut(s) 13, 563
Hpy99I CGWCG 2 cut(s) 130, 154
HpyAV CCTTC 4 cut(s) 114, 343, 576, 879
HpyCH4III ACNGT 3 cut(s) 310, 668, 938
HpyCH4IV ACGT 2 cut(s) 125, 322
HpyCH4V TGCA 5 cut(s) 332, 557, 602, 650, 942
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
HpyF3I CTNAG 6 cut(s) 30, 167, 729, 915, 930, 987
HpySE526I ACGT 2 cut(s) 125, 322
Hsp92II CATG 6 cut(s) 64, 88, 332, 380, 503, 959
HspAI GCGC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 49, 163, 177, 877
LmnI GCTCC 3 cut(s) 229, 436, 448
LweI GCATC 4 cut(s) 461, 611, 637, 825
MaeI CTAG 3 cut(s) 245, 632, 774
MaeII ACGT 2 cut(s) 125, 322
MaeIII GTNAC 2 cut(s) 547, 674
MalI GATC 4 cut(s) 51, 165, 179, 879
MboI GATC 4 cut(s) 49, 163, 177, 877
MboII GAAGA 3 cut(s) 187, 289, 292
MflI RGATCY 2 cut(s) 163, 177
MhlI GDGCHC 2 cut(s) 234, 445
MluCI AATT 4 cut(s) 79, 740, 811, 853
MlyI GAGTC 2 cut(s) 515, 583
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 180
MseI TTAA 2 cut(s) 852, 857
MslI CAYNNNNRTG 3 cut(s) 59, 504, 582
MspI CCGG 2 cut(s) 71, 181
MspR9I CCNGG 4 cut(s) 71, 72, 208, 571
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 2 cut(s) 208, 571
MvnI CGCG 3 cut(s) 134, 149, 270
MwoI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
NciI CCSGG 2 cut(s) 71, 72
NcoI CCATGG 1 cut(s) 955
NdeI CATATG 1 cut(s) 901
NdeII GATC 4 cut(s) 49, 163, 177, 877
NheI GCTAGC 1 cut(s) 631
NlaIII CATG 6 cut(s) 64, 88, 332, 380, 503, 959
NlaIV GGNNCC 1 cut(s) 804
NmeAIII GCCGAG 2 cut(s) 184, 370
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 976
PfeI GAWTC 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 569
PkrI GCNGC 3 cut(s) 90, 93, 148
PleI GAGTC 2 cut(s) 515, 582
PpsI GAGTC 2 cut(s) 515, 582
Ppu21I YACGTR 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 206, 569
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 206, 569
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 3 cut(s) 64, 73, 802
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PsuI RGATCY 2 cut(s) 163, 177
RsaI GTAC 2 cut(s) 341, 381
RsaNI GTAC 2 cut(s) 340, 380
RseI CAYNNNNRTG 3 cut(s) 59, 504, 582
SaqAI TTAA 2 cut(s) 852, 857
SatI GCNGC 3 cut(s) 89, 92, 147
Sau3AI GATC 4 cut(s) 49, 163, 177, 877
Sau96I GGNCC 3 cut(s) 64, 73, 802
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 2 cut(s) 515, 583
ScrFI CCNGG 4 cut(s) 71, 72, 208, 571
SduI GDGCHC 2 cut(s) 234, 445
SfaNI GCATC 4 cut(s) 461, 611, 637, 825
SfcI CTRYAG 1 cut(s) 664
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SinI GGWCC 1 cut(s) 802
SmaI CCCGGG 1 cut(s) 72
SmiMI CAYNNNNRTG 3 cut(s) 59, 504, 582
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
SnaBI TACGTA 1 cut(s) 323
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 4 cut(s) 79, 740, 811, 853
SsiI CCGC 5 cut(s) 89, 92, 132, 147, 268
SspMI CTAG 3 cut(s) 245, 632, 774
StyD4I CCNGG 4 cut(s) 69, 70, 206, 569
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 3 cut(s) 310, 668, 938
TaiI ACGT 2 cut(s) 128, 325
TaqI TCGA 2 cut(s) 48, 770
TasI AATT 4 cut(s) 79, 740, 811, 853
TatI WGTACW 1 cut(s) 339
TauI GCSGC 3 cut(s) 91, 94, 149
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 2 cut(s) 852, 857
Tru9I TTAA 2 cut(s) 852, 857
TscAI CASTG 2 cut(s) 559, 757
TspDTI ATGAA 2 cut(s) 733, 918
TspMI CCCGGG 1 cut(s) 70
TspRI CASTG 2 cut(s) 559, 757
VpaK11BI GGWCC 1 cut(s) 802
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 2 cut(s) 740, 811
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 380
XmaI CCCGGG 1 cut(s) 70
XspI CTAG 3 cut(s) 245, 632, 774
ZrmI AGTACT 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.