Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Reverse (-)

6232968 .. 6244886

Gene Structure 11919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3588 bp

ATGCACATAAAGCAGATTATAATTGAAGGATTTAAGAGCTACAGAGAACAGGTTGCTACTGAGCCATTCAGTCCAAAAATCAATTGCGTTGTTGGTGCTAATGGGTCCGGAAAGACAAACTTTTTCCATGCAATTCGGTTTGTACTAAGTGACCTTTTCCAAAACCTTCGAAGCGACGATCGGCATGCTCTACTCCATGAAGGTGCAGGGCACCAAGTCTTATCTGCATTTGTGGAGATTGTCTTCGATAACTCTGACAATCGAATACCGGTTGATAAGGAGGAAGTGCGGTTGCGAAGGACAATTGGTTTGAAGAAGGATGAGTATTTCTTGGATGGAAAGCACATCACGAAAACTGAGGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCCAATCCATATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGATTCTGAGCGACTGGATTTACTTAAGGAAATCGGTGGCACTCGAGTGTATGAGGAGAGACGTCAAGAAAGTTTGAAAATCATGCAGGACACTGGTAACAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAACTGGACGAAGAGAAAGAGGAACTGAGAAAGTATCAGCAGCTTGACAAGCAGCGAAAATCTCTGGAATACACTATATATGACAAGGAACTTCAGGATGCTCGCCAAAGGCTGGCAGAGGTAGAAGATGATCGGAATAAGGTTTCTGAAACATCGACGAGGATGTATAATAGTGTGCTGGATGCCCATGAAAAATTGACAAAAGAGCTACAAGCTTTAAATAAAGAGAAAGAAGCAGTGGAAAAACGAAGAACAGACGCGATAAAGAAACACACAGAGCTTGAGCTTGATGTCAAAGATCTACAGGAGAAGATATCTGGAAACATCCGAGCCAAAGAAGATGCTGTGAAACAACTACAGAGTCTGCAGAAAGAGATTCAGGATTCAATGGATGAGCTTGAGAATATAAGTCCTCTGTATGAGAATCAAGTCATGAGGGAAAAGGAGATAACAAAGGGAATAATGGAGCGTGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCGACCCAGTTTCCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCTTTCGTCAAATTTGGCACAGGAGAACAAGCTTCAGGATGAAATTAAACGTCTTAATGCTGAATTGAACGAGCGGGGTACTTACATTGAATCTCGAAGAAATGAAATTACTAACAAGGAATCTCTCATCTCTCAGTCACGTGAAGGGTTCAGTCATCATAAAGCAGAGAGGGACAAGATGCAGGATGAGCGCAAGACCCTATGGAGGAAAGAAACAGAACTTTCTGCTGAAATTGATAAACTGAGAACAGAAGTTGAGAAGGCAGAGAAGAGCCTTGATCATTCAACTCCTGGTGATGTGAGGAGAGGGCTAAATTCTGTTCGTAAGATCTGCAGAGAGTATAATATTCCTGGGGTATTTGGTCCTATTATTGAGTTGCTTGATTGTGAGGAAAAGTTTTTTACAGCAGTGGAAGTTACTGCTGGGAACAGCTTATTTCATGTTGTGGTTGAAAATGATGAAATATCAACTCAGATAATCAGGCACCTTAATTCACTGAAAGGTGGGCGTGTTACTTTTATCCCCCTGAATAGGGTGAGGGCTCCAAGGGTAACTTATCCACAAAACTCAGACGTGGTTCCTTTGTTGAAGAGGTTAAAGTTTCTTCCAAAGTACACTGCTGCATTTGCTCAGGTATTTGCTAGAACAGTTGTTTGTCGAGATCTGGATGTGGCCACAAAGGTTGCTCGTAGCGATGGTCTAGATTGCATCACTTTAGAAGGAGATCAAGTCAGTAAGAAGGGTGGGATGACGGGAGGATTTTATGATCACAGACGCTCAAAGTTGAAGTTCATGAATCTAATCCGACAGAATACAAAATCTATCAGCTTGAAAGAAGAAGAACTTGAGAAAATCAGAAATATGCTTGAAAATATCCTCTTAATAGACGAGGAAATTACAAAACTTGTAACTGAGCAGCAGAAAATTGATGCTGAGCGAGTCCATGTCAAATCAGAACTGGAACAGCTTAAGCAGGACATTGCGAATGCTAATAAGCAGCAAAATTTAATTTCTAAAGCACTTGGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTTCAAATTGATCAGCTTAGAGCTAGTATGGCCATGAAGCATGCTGAAATGGGCACCGATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTGAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAAGGAAGGCAGAGCTTGAAACTAATTTAACTACGAACCTTAAGAGGCGGAAGCAAGAACTAGAGGCAATAATATCTTCTGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACCAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCAGGATGAAGCCAAACAGCTGGAGCAGCTACTGAGTAAAAGAAATATGTATCTTGCTAAACAAGAAGAGTACTCAAAGAAAATCAGGGAATTGGGTGCATTGTCATCGGATGCTTTTGAAACGTATAAGCGAAGGAACATCAAAGAACTACATAAAATGCTGCACAGATGCAATGAGCAACTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTTGACCAGTATGTAAATTTTACAGAACAACGTGAAGAACTCCAGAGAAGGCAAGCTGAACTGGATGCAGGTGATGAGAAAATTGCAGAACTTATATCTGTCTTAGATCAAAGGAAGGATGAATCAATAGAACGCACTTTTAAAGGTGTTGCTAGGAACTTTCGAGAAGTTTTCTCTGAACTTGTGCAAGGTGGCCATGGTCACCTTCTCATGGTGAAAAGAAAGGATGGTAACCATGCTGACGATGATCTGGATGAGGATGATGGACCAGGGGAAACAGATAGATCTGAGAAATATATTGGTGTGAAAGTAAAGGTTTCTTTTACCGGGCAAGGAGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCATTGACGCTTATCTTTGCAATACAGCAATGTGATCCTGCTCCTTTCTATCTTTTTGATGAAATTGATGCAGCACTGGATCCTCAGTACAGGACTGCTGTTGGAAATATGATCCGACGCCTGGCAGATACCGAAACTACTCAATTTATAACTACAACATTCCGACAAGAGCTTGTGAAAGTTTCTGACAAGATATATGGTGTTACACATTCAAACAGGGTGAGCCGTGTCAACGTTATCTCAAAGGAAGAAGCATTGAACTTTATTGATCAAGACCAGTCACACAATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1195

Amino Acids

138.06

Weight (kDa)

6.17

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 433	2e-07	AAA ATPase domain
SMC_N	PF02463	2 - 1170	5.5e-68	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	6 - 335	2.8e-11	AAA domain
AAA_21	PF13304	27 - 56	5.5e-06	AAA domain, putative AbiEii toxin, Type IV TA system
Myosin_tail_1	PF01576	264 - 485	1.7e-07	Myosin tail
SMC_hinge	PF06470	512 - 624	4.3e-28	SMC proteins Flexible Hinge Domain
AAA_21	PF13304	1059 - 1150	3.1e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	20, 3440
AarI	CACCTGC	1 cut(s)	2966
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	2966
AccB1I	GGYRCC	3 cut(s)	210, 1668, 2294
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccBSI	CCGCTC	1 cut(s)	1258
AccII	CGCG	1 cut(s)	863
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	5 cut(s)	289, 1258, 2239, 2396, 2464
AclI	AACGTT	1 cut(s)	3525
AclWI	GGATC	6 cut(s)	2340, 2406, 3320, 3365, 3378, 3397
AcoI	YGGCCR	3 cut(s)	1857, 2271, 3100
AcsI	RAATTY	5 cut(s)	367, 1195, 1498, 2188, 2923
AcuI	CTGAAG	4 cut(s)	680, 1202, 2433, 2678
AcvI	CACGTG	1 cut(s)	1325
AcyI	GRCGYC	2 cut(s)	514, 3409
AfaI	GTAC	6 cut(s)	144, 584, 1264, 1799, 2765, 3380
AfiI	CCNNNNNNNGG	6 cut(s)	715, 1389, 1716, 1717, 3118, 3412
AflII	CTTAAG	3 cut(s)	476, 2153, 2456
AgeI	ACCGGT	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	1759
AjnI	CCWGG	4 cut(s)	1474, 1534, 3175, 3411
AleI	CACNNNNGTG	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	505, 2402, 3239
AlwI	GGATC	6 cut(s)	2340, 2406, 3320, 3365, 3378, 3397
AlwNI	CAGNNNCTG	3 cut(s)	967, 2545, 2725
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	3 cut(s)	1857, 2271, 3100
ApoI	RAATTY	5 cut(s)	367, 1195, 1498, 2188, 2923
ArsI	GACNNNNNNTTYG	4 cut(s)	292, 324, 1093, 1125
AsiGI	ACCGGT	1 cut(s)	268
Asp700I	GAANNNNTTC	2 cut(s)	1182, 2596
AspLEI	GCGC	1 cut(s)	1377
AspS9I	GGNCC	3 cut(s)	105, 1547, 3173
AsuC2I	CCSGG	1 cut(s)	3235
AsuHPI	GGTGA	7 cut(s)	1490, 1732, 2531, 2990, 3101, 3133, 3523
AsuII	TTCGAA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	3 cut(s)	105, 1547, 3173
BaeGI	GKGCMC	2 cut(s)	213, 2297
BalI	TGGCCA	3 cut(s)	1859, 2273, 3102
BamHI	GGATCC	1 cut(s)	3370
BanI	GGYRCC	3 cut(s)	210, 1668, 2294
BanII	GRGCYC	1 cut(s)	1729
BauI	CACGAG	1 cut(s)	1140
BbrPI	CACGTG	1 cut(s)	1325
BbsI	GAAGAC	2 cut(s)	235, 2679
BccI	CCATC	5 cut(s)	329, 1874, 2606, 3128, 3164
BceAI	ACGGC	1 cut(s)	3501
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 2781, 2815
BciT130I	CCWGG	4 cut(s)	1476, 1536, 3177, 3413
BclI	TGATCA	5 cut(s)	1462, 1951, 2251, 2308, 3559
BcnI	CCSGG	1 cut(s)	3235
BcoDI	GTCTC	3 cut(s)	505, 2402, 3239
BfaI	CTAG	6 cut(s)	1827, 1886, 2265, 2477, 2556, 3060
BfmI	CTRYAG	5 cut(s)	40, 905, 959, 968, 1516
BfrI	CTTAAG	3 cut(s)	476, 2153, 2456
BfuAI	ACCTGC	1 cut(s)	2966
BglII	AGATCT	5 cut(s)	901, 1512, 1846, 2365, 3191
BlpI	GCTNAGC	2 cut(s)	1085, 2118
BmcAI	AGTACT	2 cut(s)	584, 2765
Bme1390I	CCNGG	5 cut(s)	1476, 1536, 3177, 3235, 3413
Bme18I	GGWCC	3 cut(s)	105, 1547, 3173
BmeT110I	CYCGRG	1 cut(s)	495
BmgBI	CACGTC	1 cut(s)	1759
BmgT120I	GGNCC	3 cut(s)	105, 1547, 3173
BmiI	GGNNCC	7 cut(s)	106, 212, 1670, 1728, 1764, 2296, 3372
BmrFI	CCNGG	5 cut(s)	1476, 1536, 3177, 3235, 3413
BmrI	ACTGGG	1 cut(s)	1114
BmuI	ACTGGG	1 cut(s)	1114
BpiI	GAAGAC	2 cut(s)	235, 2679
BpmI	CTGGAG	3 cut(s)	2304, 2735, 2933
Bpu10I	CCTNAGC	1 cut(s)	1815
Bpu1102I	GCTNAGC	2 cut(s)	1085, 2118
Bpu14I	TTCGAA	1 cut(s)	169
BpuEI	CTTGAG	4 cut(s)	905, 1022, 2051, 2326
BpuMI	CCSGG	1 cut(s)	3235
BsaAI	YACGTR	1 cut(s)	1325
BsaHI	GRCGYC	2 cut(s)	514, 3409
BsaJI	CCNNGG	5 cut(s)	1535, 1730, 2640, 3103, 3176
BsaWI	WCCGGW	2 cut(s)	107, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	1899, 1929
Bsc4I	CCNNNNNNNGG	6 cut(s)	715, 1389, 1716, 1717, 3118, 3412
Bse118I	RCCGGY	1 cut(s)	268
Bse3DI	GCAATG	3 cut(s)	2163, 2872, 3326
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	4 cut(s)	1476, 1536, 3177, 3413
BseDI	CCNNGG	5 cut(s)	1535, 1730, 2640, 3103, 3176
BseLI	CCNNNNNNNGG	6 cut(s)	715, 1389, 1716, 1717, 3118, 3412
BseMI	GCAATG	3 cut(s)	2163, 2872, 3326
BseRI	GAGGAG	3 cut(s)	521, 1501, 2339
BseSI	GKGCMC	2 cut(s)	213, 2297
BseYI	CCCAGC	2 cut(s)	383, 1607
BsgI	GTGCAG	3 cut(s)	225, 437, 2840
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	1859, 2273, 3102
BshNI	GGYRCC	3 cut(s)	210, 1668, 2294
BshTI	ACCGGT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	3 cut(s)	108, 269, 3234
BslFI	GGGAC	1 cut(s)	1370
BslI	CCNNNNNNNGG	6 cut(s)	715, 1389, 1716, 1717, 3118, 3412
BsmAI	GTCTC	3 cut(s)	505, 2402, 3239
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	1370
BsmI	GAATGC	1 cut(s)	2176
BsnI	GGCC	3 cut(s)	1859, 2273, 3102
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	213, 1729, 2297
Bsp13I	TCCGGA	1 cut(s)	107
Bsp1720I	GCTNAGC	2 cut(s)	1085, 2118
Bsp19I	CCATGG	1 cut(s)	3103
BspACI	CCGC	5 cut(s)	289, 1258, 2239, 2396, 2464
BspANI	GGCC	3 cut(s)	1859, 2273, 3102
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	2 cut(s)	1035, 1977
BspLI	GGNNCC	7 cut(s)	106, 212, 1670, 1728, 1764, 2296, 3372
BspMAI	CTGCAG	2 cut(s)	972, 1520
BspMI	ACCTGC	1 cut(s)	2966
BspPI	GGATC	6 cut(s)	2340, 2406, 3320, 3365, 3378, 3397
BspQI	GCTCTTC	1 cut(s)	1448
BspT104I	TTCGAA	1 cut(s)	169
BspT107I	GGYRCC	3 cut(s)	210, 1668, 2294
BspTI	CTTAAG	3 cut(s)	476, 2153, 2456
BsrBI	CCGCTC	1 cut(s)	1258
BsrDI	GCAATG	3 cut(s)	2163, 2872, 3326
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	5 cut(s)	1535, 1730, 2640, 3103, 3176
BssNI	GRCGYC	2 cut(s)	514, 3409
BssSI	CACGAG	1 cut(s)	1140
BssT1I	CCWWGG	3 cut(s)	1730, 2640, 3103
Bst2BI	CACGAG	1 cut(s)	1140
Bst2UI	CCWGG	4 cut(s)	1476, 1536, 3177, 3413
Bst4CI	ACNGT	3 cut(s)	1834, 2883, 3286
Bst6I	CTCTTC	5 cut(s)	609, 1448, 1769, 2587, 2754
BstACI	GRCGYC	2 cut(s)	514, 3409
BstAFI	CTTAAG	3 cut(s)	476, 2153, 2456
BstBAI	YACGTR	1 cut(s)	1325
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	5 cut(s)	186, 706, 717, 2283, 2961
BstDSI	CCRYGG	1 cut(s)	3103
BstEII	GGTNACC	2 cut(s)	3107, 3137
BstFNI	CGCG	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	1377
BstMAI	GTCTC	3 cut(s)	505, 2402, 3239
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 652, 1078, 1372, 1811, 2270, 2423, 2719
BstNI	CCWGG	4 cut(s)	1476, 1536, 3177, 3413
BstNSI	RCATGY	3 cut(s)	188, 2285, 2391
BstPI	GGTNACC	2 cut(s)	3107, 3137
BstSCI	CCNGG	5 cut(s)	1474, 1534, 3175, 3233, 3411
BstSFI	CTRYAG	5 cut(s)	40, 905, 959, 968, 1516
BstSLI	GKGCMC	2 cut(s)	213, 2297
BstUI	CGCG	1 cut(s)	863
BstV2I	GAAGAC	2 cut(s)	235, 2679
BstX2I	RGATCY	7 cut(s)	901, 1512, 1846, 2332, 2365, 3191, 3370
BstXI	CCANNNNNNTGG	1 cut(s)	2713
BstYI	RGATCY	7 cut(s)	901, 1512, 1846, 2332, 2365, 3191, 3370
BsuRI	GGCC	3 cut(s)	1859, 2273, 3102
BtgI	CCRYGG	1 cut(s)	3103
BtgZI	GCGATG	1 cut(s)	1893
BtrI	CACGTC	1 cut(s)	1759
BtsI	GCAGTG	3 cut(s)	846, 1599, 1800
BtsIMutI	CAGTG	7 cut(s)	443, 543, 846, 1599, 1679, 1800, 3365
BveI	ACCTGC	1 cut(s)	2966
Cac8I	GCNNGC	5 cut(s)	186, 706, 717, 2283, 2961
CaiI	CAGNNNCTG	3 cut(s)	967, 2545, 2725
CciI	TCATGA	2 cut(s)	1035, 1977
CfoI	GCGC	1 cut(s)	1377
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	105, 1547, 3173
CseI	GACGC	4 cut(s)	869, 1968, 3307, 3417
Csp6I	GTAC	6 cut(s)	143, 583, 1263, 1798, 2764, 3379
CspAI	ACCGGT	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	1849, 1884
CviQI	GTAC	6 cut(s)	143, 583, 1263, 1798, 2764, 3379
DraI	TTTAAA	2 cut(s)	822, 3049
EaeI	YGGCCR	3 cut(s)	1857, 2271, 3100
Eam1104I	CTCTTC	5 cut(s)	609, 1448, 1769, 2587, 2754
EarI	CTCTTC	5 cut(s)	609, 1448, 1769, 2587, 2754
EciI	GGCGGA	2 cut(s)	2411, 2479
Eco130I	CCWWGG	3 cut(s)	1730, 2640, 3103
Eco24I	GRGCYC	1 cut(s)	1729
Eco32I	GATATC	1 cut(s)	918
Eco47I	GGWCC	3 cut(s)	105, 1547, 3173
Eco57I	CTGAAG	4 cut(s)	680, 1202, 2433, 2678
Eco72I	CACGTG	1 cut(s)	1325
Eco88I	CYCGRG	1 cut(s)	495
Eco91I	GGTNACC	2 cut(s)	3107, 3137
EcoO65I	GGTNACC	2 cut(s)	3107, 3137
EcoRII	CCWGG	4 cut(s)	1474, 1534, 3175, 3411
EcoRV	GATATC	1 cut(s)	918
EcoT14I	CCWWGG	3 cut(s)	1730, 2640, 3103
EcoT38I	GRGCYC	1 cut(s)	1729
ErhI	CCWWGG	3 cut(s)	1730, 2640, 3103
Esp3I	CGTCTC	1 cut(s)	505
FalI	AAGNNNNNCTT	8 cut(s)	104, 136, 1723, 1755, 2013, 2045, 2364, 2396
FaqI	GGGAC	1 cut(s)	1370
FauI	CCCGC	2 cut(s)	1251, 2232
FbaI	TGATCA	5 cut(s)	1462, 1951, 2251, 2308, 3559
FriOI	GRGCYC	1 cut(s)	1729
FspBI	CTAG	6 cut(s)	1827, 1886, 2265, 2477, 2556, 3060
GlaI	GCGC	1 cut(s)	1376
GsaI	CCCAGC	2 cut(s)	387, 1611
GsuI	CTGGAG	3 cut(s)	2304, 2735, 2933
HaeIII	GGCC	3 cut(s)	1859, 2273, 3102
HapII	CCGG	3 cut(s)	108, 269, 3234
HgaI	GACGC	4 cut(s)	869, 1968, 3307, 3417
HhaI	GCGC	1 cut(s)	1377
Hin1I	GRCGYC	2 cut(s)	514, 3409
Hin6I	GCGC	1 cut(s)	1375
HinP1I	GCGC	1 cut(s)	1375
HincII	GTYRAC	2 cut(s)	2896, 3523
HindII	GTYRAC	2 cut(s)	2896, 3523
HindIII	AAGCTT	3 cut(s)	816, 1214, 2378
HpaII	CCGG	3 cut(s)	108, 269, 3234
HphI	GGTGA	7 cut(s)	1490, 1732, 2531, 2990, 3101, 3133, 3523
Hpy166II	GTNNAC	3 cut(s)	1800, 2896, 3523
Hpy8I	GTNNAC	3 cut(s)	1800, 2896, 3523
Hpy99I	CGWCG	3 cut(s)	179, 763, 3411
HpyCH4III	ACNGT	3 cut(s)	1834, 2883, 3286
HpyCH4IV	ACGT	7 cut(s)	514, 1234, 1324, 1758, 2816, 2938, 3525
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 652, 1078, 1372, 1811, 2270, 2423, 2719
HpySE526I	ACGT	7 cut(s)	514, 1234, 1324, 1758, 2816, 2938, 3525
Hsp92I	GRCGYC	2 cut(s)	514, 3409
HspAI	GCGC	1 cut(s)	1375
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	5 cut(s)	1462, 1951, 2251, 2308, 3559
LguI	GCTCTTC	1 cut(s)	1448
LmnI	GCTCC	5 cut(s)	401, 1069, 1732, 2716, 3337
MaeI	CTAG	6 cut(s)	1827, 1886, 2265, 2477, 2556, 3060
MaeII	ACGT	7 cut(s)	514, 1234, 1324, 1758, 2816, 2938, 3525
MbiI	CCGCTC	1 cut(s)	1258
MfeI	CAATTG	3 cut(s)	82, 303, 2627
MflI	RGATCY	7 cut(s)	901, 1512, 1846, 2332, 2365, 3191, 3370
MhlI	GDGCHC	3 cut(s)	213, 1729, 2297
MlsI	TGGCCA	3 cut(s)	1859, 2273, 3102
MluNI	TGGCCA	3 cut(s)	1859, 2273, 3102
MlyI	GAGTC	4 cut(s)	973, 2133, 2311, 3241
MmeI	TCCRAC	4 cut(s)	2014, 3373, 3430, 3478
Mox20I	TGGCCA	3 cut(s)	1859, 2273, 3102
MroI	TCCGGA	1 cut(s)	107
MroXI	GAANNNNTTC	2 cut(s)	1182, 2596
MscI	TGGCCA	3 cut(s)	1859, 2273, 3102
MslI	CAYNNNNRTG	2 cut(s)	201, 497
Msp20I	TGGCCA	3 cut(s)	1859, 2273, 3102
MspA1I	CMGCKG	1 cut(s)	2713
MspCI	CTTAAG	3 cut(s)	476, 2153, 2456
MspI	CCGG	3 cut(s)	108, 269, 3234
MspR9I	CCNGG	5 cut(s)	1476, 1536, 3177, 3235, 3413
MunI	CAATTG	3 cut(s)	82, 303, 2627
Mva1269I	GAATGC	1 cut(s)	2176
MvaI	CCWGG	4 cut(s)	1476, 1536, 3177, 3413
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	8 cut(s)	10, 652, 1078, 1372, 1811, 2270, 2423, 2719
NciI	CCSGG	1 cut(s)	3235
NcoI	CCATGG	1 cut(s)	3103
NlaIV	GGNNCC	7 cut(s)	106, 212, 1670, 1728, 1764, 2296, 3372
NmuCI	GTSAC	5 cut(s)	149, 1142, 1320, 3107, 3570
NspI	RCATGY	3 cut(s)	188, 2285, 2391
NspV	TTCGAA	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	497
PaeI	GCATGC	2 cut(s)	188, 2285
PaeR7I	CTCGAG	1 cut(s)	495
PagI	TCATGA	2 cut(s)	1035, 1977
PaqCI	CACCTGC	1 cut(s)	2966
PciSI	GCTCTTC	1 cut(s)	1448
PctI	GAATGC	1 cut(s)	2176
PdmI	GAANNNNTTC	2 cut(s)	1182, 2596
PfeI	GAWTC	9 cut(s)	455, 979, 986, 1027, 1274, 1304, 1981, 2536, 3029
PflFI	GACNNNGTC	1 cut(s)	3250
PflMI	CCANNNNNTGG	1 cut(s)	715
PinAI	ACCGGT	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	4 cut(s)	972, 2132, 2311, 3241
PmaCI	CACGTG	1 cut(s)	1325
PmlI	CACGTG	1 cut(s)	1325
PpsI	GAGTC	4 cut(s)	972, 2132, 2311, 3241
Ppu21I	YACGTR	1 cut(s)	1325
PsiI	TTATAA	2 cut(s)	20, 3440
Psp1406I	AACGTT	1 cut(s)	3525
Psp6I	CCWGG	4 cut(s)	1474, 1534, 3175, 3411
PspCI	CACGTG	1 cut(s)	1325
PspEI	GGTNACC	2 cut(s)	3107, 3137
PspFI	CCCAGC	2 cut(s)	383, 1607
PspGI	CCWGG	4 cut(s)	1474, 1534, 3175, 3411
PspN4I	GGNNCC	7 cut(s)	106, 212, 1670, 1728, 1764, 2296, 3372
PspPI	GGNCC	3 cut(s)	105, 1547, 3173
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	2 cut(s)	972, 1520
PstNI	CAGNNNCTG	3 cut(s)	967, 2545, 2725
PsuI	RGATCY	7 cut(s)	901, 1512, 1846, 2332, 2365, 3191, 3370
PsyI	GACNNNGTC	1 cut(s)	3250
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	2713
RsaI	GTAC	6 cut(s)	144, 584, 1264, 1799, 2765, 3380
RsaNI	GTAC	6 cut(s)	143, 583, 1263, 1798, 2764, 3379
RseI	CAYNNNNRTG	2 cut(s)	201, 497
SapI	GCTCTTC	1 cut(s)	1448
Sau96I	GGNCC	3 cut(s)	105, 1547, 3173
ScaI	AGTACT	2 cut(s)	584, 2765
SchI	GAGTC	4 cut(s)	973, 2133, 2311, 3241
ScrFI	CCNGG	5 cut(s)	1476, 1536, 3177, 3235, 3413
SduI	GDGCHC	3 cut(s)	213, 1729, 2297
SfcI	CTRYAG	5 cut(s)	40, 905, 959, 968, 1516
Sfr274I	CTCGAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	3 cut(s)	105, 1547, 3173
SlaI	CTCGAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	201, 497
SmlI	CTYRAG	8 cut(s)	476, 495, 884, 1001, 2030, 2153, 2341, 2456
SmoI	CTYRAG	8 cut(s)	476, 495, 884, 1001, 2030, 2153, 2341, 2456
SphI	GCATGC	2 cut(s)	188, 2285
SsiI	CCGC	5 cut(s)	289, 1258, 2239, 2396, 2464
SspI	AATATT	1 cut(s)	1531
SspMI	CTAG	6 cut(s)	1827, 1886, 2265, 2477, 2556, 3060
StyD4I	CCNGG	5 cut(s)	1474, 1534, 3175, 3233, 3411
StyI	CCWWGG	3 cut(s)	1730, 2640, 3103
TaaI	ACNGT	3 cut(s)	1834, 2883, 3286
TaiI	ACGT	7 cut(s)	517, 1237, 1327, 1761, 2819, 2941, 3528
TatI	WGTACW	5 cut(s)	142, 582, 1797, 2763, 3378
TfiI	GAWTC	9 cut(s)	455, 979, 986, 1027, 1274, 1304, 1981, 2536, 3029
TscAI	CASTG	7 cut(s)	450, 550, 846, 1599, 1686, 1807, 3372
TseFI	GTSAC	5 cut(s)	149, 1142, 1320, 3107, 3570
Tsp45I	GTSAC	5 cut(s)	149, 1142, 1320, 3107, 3570
TspRI	CASTG	7 cut(s)	450, 550, 846, 1599, 1686, 1807, 3372
Tth111I	GACNNNGTC	1 cut(s)	3250
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	3 cut(s)	476, 2153, 2456
VpaK11BI	GGWCC	3 cut(s)	105, 1547, 3173
XapI	RAATTY	5 cut(s)	367, 1195, 1498, 2188, 2923
XbaI	TCTAGA	1 cut(s)	1885
XceI	RCATGY	3 cut(s)	188, 2285, 2391
XhoI	CTCGAG	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	1182, 2596
XspI	CTAG	6 cut(s)	1827, 1886, 2265, 2477, 2556, 3060
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	2 cut(s)	584, 2765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.