Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Reverse (-)

55613429 .. 55625646

Gene Structure 12218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3708 bp

ATGCACATAAAGCAGATTATAATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACCGAGCCATTCAGTCCAAAAATCAATTGTGTTGTTGGTGCTAATGGGTCTGGAAAGACGAACTTTTTCCATGCAATTCAGTTTGTATTAAGTGACCTTTTCCAAAACCTTCGGAGTGACGATCGGCATACGCTACTCCATGAAGGTGCAGGGCACCAAGTCTTATCTGCATTTGTGGAGATTGTCTTCGATAACTCTGACAATCGAATAACGGATGATAAGGAGGAAGTGCGGTTGCGAAGGACAATTGGTTTAAAGAAGGATGAGTATTTCTTGAATGGAAAGCACATCACGAAAACCGAGGTTATGAATTTACTGGAGAGTGCTGGGTTCTCTCGCTCCAATCCATATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGATTCTGAGCGACTGGATTTACTTAAGGAAATCGGTGGCACTCGAGTGTATGAGGAGAGATGTCAAGAAAGTTTGAAAATCATGCAGGACACTGGTAGCAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAACTGAACGAAGAGAAAGAGGAACTTAGAAAGTATCAGCAGCTTGACAAGCAGCGAAAATCTCTGGAGTACACTATATATGACAAGGAACTTCAGGATGCTCGCCAAAGGCTGACAGAGGTAGAAGACGCTCGAAATAAGCTTTCTGAAACATCAACGCAAAAGTATAATAGCGTGCTGGAGGCGCATGAAAAGTCCAAGGACTTGGATAAGGCTTTGAAAGATCTGACAAAAGAGCTACAAGCTTTAAATAAAGAGAAAGAAGCAGTAGAAAAGCGAAGAACAGAAGCAACAAAGAAACACACAGAGCTTGAGCTTGATGTCAAAGATCTACAGGAGAAGATATCTGGAAACATCCGAGCCAAAGAGGATGCTGTGAAACAACTACAAAGTCTGCAGAAAGAAATTCAGGATTCAATGGATGAGCTTGAGAAGATAAGTCCTCTGTATGAGAATCAAGTCATGAGGGAAAAGGAGATGACAAAGGGAATAATGGAGCGCGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCGACCCAGTTTCCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCTTTCTTCAAATTTGGCACAGGAGAAAAAGCTTCAGGATGAAGTCAAACGTCTTAATTCTGAGTTGAATGAGCAGGGTACTTACATTGGATCTCAAAGAAATGAAATTACTACCATGGAGTGTGTCATCTCTCAGTTACGTGAAGGGTTCAGTCATTATAAAGCACAGAGGGACAAGATGAAGGATGAGCACAATACTCTATGGAAGAAAGAAACTGAACTTTCTGCTGAAATTGAGAAACTGAGAACAGAAGTTGAGAAGGCAGAGAAGAGCCTTGATCATGCAACTCCTGGTGATGTGAGGAGAGGGCTAAATTCTGTTCGTAAGATCTGCAGAGAGCATAATACTCCTGGGGTATTTGGCTGTGTTATTGAGCTGCTTGATTGTGAAGAAAAGTTATTTACTGCAGTGGACGTTGCTGCGGGGAACAGCTTATTTCATGTTGTGGTTGAAAATGATGATATATCAACTCAGATAATCAGGCACCTTAATTCACTGAAAGCTGGCCGTGTTACGTTTATCCCTCTGACTAGGGTGATGGCTCCAAGGGTAACTTATCCACAAAATTCAGATCTGGTTCCTTTGTTGAAGAGGTTAAAATTTCTTCCAAAGTACACTGCTGCATTTGCTCAGGTATTTGCAAGAACAGTTCTTTGTCGAGATCTGGATGTGGCCACAAAGGTTGCTCATACCGACGGTCTTGACTGCATCACTTTAGAAGGAGATCAAGTCAGCAAGAAGGGTGGAATGACAGGAGGATTTTATGATCATAGACACTCAAAATTGAAGTTTATGAATCTAATCCGACAGAATGCAAAATCTACCAACTTGAAAGAAGAAGAACTTGAGAAAATCACATTTATGCTTGAAGATATCCTCTTAACTTTTATATATTTCTCAATAGACCAGAAAATTACAGATCTTGAAACTAAGCTGGGGAAAATTGATGCTGAGCGAGCTTACAGCAAATTAAAACTGGAACAGCTTAAGCAGGACATTGTGAATGCTAATAAGAAGGAAAGTTTAATTTCTAAAGCACTTGGGAATAAGGAAAAATCACTTGCTGATGTGCAGACTCAAATTGATCAGCTTAGAGCTAGTACGGCCATGAAGAGGGCTGAAATGGTCACTGATCTCATTGATCATTTGACTCCAAAGGAGAAGGATCTTCTCTCAAGGTTGAACCCTGAAATAACAGATCTTAAAGAGAAGCTTATTACATGCAAGGTGGATCGAACTGAGACTGAAGCAAGAAAGGTAGAGCTCGAGACTAATTTAACTACGAACCTTAAGAGGCGGAAGCAAGAATTAGAGGCAATAGTATCTTCTGCGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGGTTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCGGAAAGTATTGACAGTCAGTCAAGGAAATTCAGGAAAACTAAGGATGAAAAGACTAAGTGGAAGAACTCGGAAGACAACTATGAGAGGACATTTCAGGATGTAGCCAAAGAGCTAGAGCAGCAACTGAGTAAAAGAAATATGTATCTTGCTAAACAAGAAGAGTACTCAAAGAAAATCCGGGAATTGGGTGCATTGTCATCAGATGCTTTTGAAACGTATAAGCGAAGGAACATCAAAGAACTGCATAAAATGCTGCACAGTTGCAATGAGCAACTGCAACGGTTTAGTCATGTAAACAAGAAAGCACTTGACCAGTATGTAAATTTTACAGAACAACGTGAAGAACTCCAGAGAAGGCAAGCTGAACTGGATGCAGGTGATGAGAAAATTGCAGAACTTATATCTTTCTTAGATCAAAGGAAGGATGAATCAATAGAACGCACTTTTAAAGGTGTTGCTAGGAACTTTCGAGAAGTTTTCTCTGAACTTGTGCAAGGTGGCCATGGCCACCTTCTCATGGTGAAAAGAAAGGATGGCATCCATGCTGATCATGATCTGGATGAGGACGAGGGACCAGAAACAGATAGATCTGAGAAATATATTGGTGTGAAAGTAAAGGTTTCTTTTACCGGGCAAGGAGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCGTTGACGCTTATCTTTGCAATCCAGCAATGTGATCCTGCTCCTTTCTATCTTTTCGATGAAATAGATGCAGCGCTGGATCTTCAGTACAGAACTGCTGTTGGAAATATGATCCGACGCCTGGCAGATACAGAAACTACTCAATTTATAACTACAACATTCCGACAAGAGCTTGTGGAAACCAGTCTCACTATGCTAACTAAAAGCAAGGTTGAATTGAAGGACAATGGAGCAGCCTCAGCCTGCATTCGGTTCTTGTGCCATATTCTTGTTGTAGCTGTTTGGTGGATTCAAACACGGATGGGGCAGTCAAATATTGTACAGAGTTCGAGACTAGTAGAAAGTTTTACAGAACAGGATCGAGATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1235

Amino Acids

142.52

Weight (kDa)

6.34

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 296	5.4e-12	AAA ATPase domain
SMC_N	PF02463	2 - 1177	3.4e-55	RecF/RecN/SMC N terminal domain
AAA_21	PF13304	27 - 61	8.3e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	522 - 634	1.8e-26	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	20, 1374, 3485
AarI	CACCTGC	1 cut(s)	3014
Acc36I	ACCTGC	1 cut(s)	3014
AccB1I	GGYRCC	2 cut(s)	210, 1698
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	4 cut(s)	289, 1637, 2512, 2546
AclWI	GGATC	7 cut(s)	1312, 2388, 2454, 3365, 3423, 3442, 3702
AcoI	YGGCCR	5 cut(s)	1720, 1887, 2319, 3148, 3154
AcsI	RAATTY	8 cut(s)	367, 1008, 1225, 1528, 1780, 1814, 2675, 2971
AcuI	CTGAAG	4 cut(s)	680, 1232, 2481, 3404
AcyI	GRCGYC	1 cut(s)	3454
AfaI	GTAC	8 cut(s)	584, 674, 1294, 1829, 2317, 2813, 3425, 3657
AfeI	AGCGCT	1 cut(s)	3411
AfiI	CCNNNNNNNGG	5 cut(s)	2328, 2833, 3166, 3457, 3585
AflII	CTTAAG	3 cut(s)	476, 2201, 2504
AhdI	GACNNNNNGTC	1 cut(s)	2665
AhlI	ACTAGT	1 cut(s)	3670
AjnI	CCWGG	3 cut(s)	1504, 1564, 3456
AleI	CACNNNNGTG	1 cut(s)	497
Alw21I	GWGCWC	2 cut(s)	1407, 2481
Alw26I	GTCTC	5 cut(s)	2450, 2477, 3284, 3527, 3661
AlwI	GGATC	7 cut(s)	1312, 2388, 2454, 3365, 3423, 3442, 3702
AlwNI	CAGNNNCTG	2 cut(s)	2593, 2773
Ama87I	CYCGRG	2 cut(s)	495, 2480
Aor51HI	AGCGCT	1 cut(s)	3411
AoxI	GGCC	5 cut(s)	1720, 1887, 2319, 3148, 3154
ApoI	RAATTY	8 cut(s)	367, 1008, 1225, 1528, 1780, 1814, 2675, 2971
ArsI	GACNNNNNNTTYG	2 cut(s)	1123, 1155
Asp700I	GAANNNNTTC	3 cut(s)	122, 1212, 2644
AspLEI	GCGC	3 cut(s)	790, 1104, 3412
AspS9I	GGNCC	1 cut(s)	3221
AsuC2I	CCSGG	2 cut(s)	2828, 3280
AsuHPI	GGTGA	5 cut(s)	1520, 1762, 2579, 3038, 3181
AvaI	CYCGRG	2 cut(s)	495, 2480
AvaII	GGWCC	1 cut(s)	3221
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	3 cut(s)	1889, 3150, 3156
BanI	GGYRCC	2 cut(s)	210, 1698
BanII	GRGCYC	1 cut(s)	2481
BauI	CACGAG	1 cut(s)	1170
BbsI	GAAGAC	3 cut(s)	235, 735, 2727
Bbv12I	GWGCWC	2 cut(s)	1407, 2481
BbvCI	CCTCAGC	1 cut(s)	3574
BccI	CCATC	3 cut(s)	1747, 3176, 3631
BceAI	ACGGC	2 cut(s)	1707, 2334
BciT130I	CCWGG	3 cut(s)	1506, 1566, 3458
BclI	TGATCA	5 cut(s)	1492, 1981, 2299, 2356, 3196
BcnI	CCSGG	2 cut(s)	2828, 3280
BcoDI	GTCTC	5 cut(s)	2450, 2477, 3284, 3527, 3661
BcuI	ACTAGT	1 cut(s)	3670
BfaI	CTAG	6 cut(s)	1746, 2313, 2604, 2762, 3108, 3671
BfmI	CTRYAG	5 cut(s)	40, 935, 998, 1546, 1620
BfoI	RGCGCY	1 cut(s)	3413
BfrI	CTTAAG	3 cut(s)	476, 2201, 2504
BfuAI	ACCTGC	1 cut(s)	3014
BglII	AGATCT	9 cut(s)	826, 931, 1542, 1786, 1876, 2134, 2413, 3236, 3700
BlpI	GCTNAGC	2 cut(s)	1115, 2166
BmcAI	AGTACT	2 cut(s)	584, 2813
Bme1390I	CCNGG	5 cut(s)	1506, 1566, 2828, 3280, 3458
Bme18I	GGWCC	1 cut(s)	3221
BmeRI	GACNNNNNGTC	1 cut(s)	2665
BmeT110I	CYCGRG	2 cut(s)	495, 2480
BmgT120I	GGNCC	1 cut(s)	3221
BmiI	GGNNCC	5 cut(s)	212, 1700, 1758, 1794, 3222
BmrFI	CCNGG	5 cut(s)	1506, 1566, 2828, 3280, 3458
BmrI	ACTGGG	1 cut(s)	1144
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	3 cut(s)	235, 735, 2727
BpmI	CTGGAG	4 cut(s)	395, 689, 803, 2981
Bpu10I	CCTNAGC	2 cut(s)	1845, 3574
Bpu1102I	GCTNAGC	2 cut(s)	1115, 2166
BpuEI	CTTGAG	4 cut(s)	935, 1052, 2081, 2374
BpuMI	CCSGG	2 cut(s)	2828, 3280
BsaAI	YACGTR	1 cut(s)	1355
BsaBI	GATNNNNATC	2 cut(s)	3201, 3699
BsaHI	GRCGYC	1 cut(s)	3454
BsaJI	CCNNGG	6 cut(s)	357, 801, 1329, 1565, 1760, 3151
BsaXI	ACNNNNNCTCC	2 cut(s)	1929, 1959
Bsc4I	CCNNNNNNNGG	5 cut(s)	2328, 2833, 3166, 3457, 3585
Bse1I	ACTGG	8 cut(s)	378, 471, 550, 1150, 2196, 2962, 3021, 3519
Bse3DI	GCAATG	2 cut(s)	2920, 3371
Bse8I	GATNNNNATC	2 cut(s)	3201, 3699
BseBI	CCWGG	3 cut(s)	1506, 1566, 3458
BseDI	CCNNGG	6 cut(s)	357, 801, 1329, 1565, 1760, 3151
BseJI	GATNNNNATC	2 cut(s)	3201, 3699
BseLI	CCNNNNNNNGG	5 cut(s)	2328, 2833, 3166, 3457, 3585
BseMI	GCAATG	2 cut(s)	2920, 3371
BseNI	ACTGG	8 cut(s)	378, 471, 550, 1150, 2196, 2962, 3021, 3519
BseRI	GAGGAG	2 cut(s)	521, 1531
BseSI	GKGCMC	1 cut(s)	213
BseYI	CCCAGC	2 cut(s)	383, 2149
BsgI	GTGCAG	4 cut(s)	225, 437, 2306, 2888
Bsh1236I	CGCG	1 cut(s)	1104
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	1722, 1889, 2321, 3150, 3156
BshNI	GGYRCC	2 cut(s)	210, 1698
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	1407, 2481
BsiHKCI	CYCGRG	2 cut(s)	495, 2480
BsiSI	CCGG	2 cut(s)	2827, 3279
BslFI	GGGAC	2 cut(s)	1400, 3234
BslI	CCNNNNNNNGG	5 cut(s)	2328, 2833, 3166, 3457, 3585
BsmAI	GTCTC	5 cut(s)	2450, 2477, 3284, 3527, 3661
BsmFI	GGGAC	2 cut(s)	1400, 3234
BsmI	GAATGC	3 cut(s)	2032, 2224, 3582
BsnI	GGCC	5 cut(s)	1722, 1889, 2321, 3150, 3156
BsoBI	CYCGRG	2 cut(s)	495, 2480
Bsp1286I	GDGCHC	3 cut(s)	213, 1407, 2481
Bsp1407I	TGTACA	1 cut(s)	3655
Bsp1720I	GCTNAGC	2 cut(s)	1115, 2166
Bsp19I	CCATGG	2 cut(s)	1329, 3151
BspACI	CCGC	4 cut(s)	289, 1637, 2512, 2546
BspANI	GGCC	5 cut(s)	1722, 1889, 2321, 3150, 3156
BspFNI	CGCG	1 cut(s)	1104
BspHI	TCATGA	2 cut(s)	1065, 3199
BspLI	GGNNCC	5 cut(s)	212, 1700, 1758, 1794, 3222
BspMAI	CTGCAG	3 cut(s)	1002, 1550, 1624
BspMI	ACCTGC	1 cut(s)	3014
BspPI	GGATC	7 cut(s)	1312, 2388, 2454, 3365, 3423, 3442, 3702
BspQI	GCTCTTC	1 cut(s)	1478
BspT107I	GGYRCC	2 cut(s)	210, 1698
BspTI	CTTAAG	3 cut(s)	476, 2201, 2504
BsrDI	GCAATG	2 cut(s)	2920, 3371
BsrGI	TGTACA	1 cut(s)	3655
BsrI	ACTGG	8 cut(s)	378, 471, 550, 1150, 2196, 2962, 3021, 3519
BssECI	CCNNGG	6 cut(s)	357, 801, 1329, 1565, 1760, 3151
BssNI	GRCGYC	1 cut(s)	3454
BssSI	CACGAG	1 cut(s)	1170
BssT1I	CCWWGG	4 cut(s)	801, 1329, 1760, 3151
Bst2BI	CACGAG	1 cut(s)	1170
Bst2UI	CCWGG	3 cut(s)	1506, 1566, 3458
Bst4CI	ACNGT	6 cut(s)	1864, 1913, 2663, 2909, 2931, 3331
Bst6I	CTCTTC	6 cut(s)	609, 1478, 1799, 2321, 2635, 2802
BstACI	GRCGYC	1 cut(s)	3454
BstAFI	CTTAAG	3 cut(s)	476, 2201, 2504
BstAPI	GCANNNNNTGC	1 cut(s)	2899
BstAUI	TGTACA	1 cut(s)	3655
BstBAI	YACGTR	1 cut(s)	1355
BstC8I	GCNNGC	6 cut(s)	706, 779, 1720, 2172, 3009, 3580
BstDSI	CCRYGG	2 cut(s)	1329, 3151
BstFNI	CGCG	1 cut(s)	1104
BstH2I	RGCGCY	1 cut(s)	3413
BstHHI	GCGC	3 cut(s)	790, 1104, 3412
BstMAI	GTCTC	5 cut(s)	2450, 2477, 3284, 3527, 3661
BstMCI	CGRYCG	1 cut(s)	181
BstNI	CCWGG	3 cut(s)	1506, 1566, 3458
BstNSI	RCATGY	1 cut(s)	2439
BstSCI	CCNGG	5 cut(s)	1504, 1564, 2826, 3278, 3456
BstSFI	CTRYAG	5 cut(s)	40, 935, 998, 1546, 1620
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	1104
BstV2I	GAAGAC	3 cut(s)	235, 735, 2727
BstXI	CCANNNNNNTGG	1 cut(s)	808
BsuRI	GGCC	5 cut(s)	1722, 1889, 2321, 3150, 3156
BtgI	CCRYGG	2 cut(s)	1329, 3151
BtsI	GCAGTG	2 cut(s)	1629, 1830
BtsIMutI	CAGTG	6 cut(s)	443, 543, 1629, 1709, 1830, 2343
BveI	ACCTGC	1 cut(s)	3014
Cac8I	GCNNGC	6 cut(s)	706, 779, 1720, 2172, 3009, 3580
CaiI	CAGNNNCTG	2 cut(s)	2593, 2773
CciI	TCATGA	2 cut(s)	1065, 3199
CfoI	GCGC	3 cut(s)	790, 1104, 3412
Cfr13I	GGNCC	1 cut(s)	3221
CseI	GACGC	3 cut(s)	740, 3352, 3462
Csp6I	GTAC	8 cut(s)	583, 673, 1293, 1828, 2316, 2812, 3424, 3656
CspCI	CAANNNNNGTGG	4 cut(s)	1879, 1914, 1939, 1974
CviQI	GTAC	8 cut(s)	583, 673, 1293, 1828, 2316, 2812, 3424, 3656
DraI	TTTAAA	3 cut(s)	312, 852, 3097
DriI	GACNNNNNGTC	1 cut(s)	2665
EaeI	YGGCCR	5 cut(s)	1720, 1887, 2319, 3148, 3154
Eam1104I	CTCTTC	6 cut(s)	609, 1478, 1799, 2321, 2635, 2802
Eam1105I	GACNNNNNGTC	1 cut(s)	2665
EarI	CTCTTC	6 cut(s)	609, 1478, 1799, 2321, 2635, 2802
EciI	GGCGGA	1 cut(s)	2527
Ecl136II	GAGCTC	1 cut(s)	2479
Eco130I	CCWWGG	4 cut(s)	801, 1329, 1760, 3151
Eco24I	GRGCYC	1 cut(s)	2481
Eco32I	GATATC	2 cut(s)	948, 2089
Eco47I	GGWCC	1 cut(s)	3221
Eco47III	AGCGCT	1 cut(s)	3411
Eco53kI	GAGCTC	1 cut(s)	2479
Eco57I	CTGAAG	4 cut(s)	680, 1232, 2481, 3404
Eco88I	CYCGRG	2 cut(s)	495, 2480
EcoICRI	GAGCTC	1 cut(s)	2479
EcoRII	CCWGG	3 cut(s)	1504, 1564, 3456
EcoRV	GATATC	2 cut(s)	948, 2089
EcoT14I	CCWWGG	4 cut(s)	801, 1329, 1760, 3151
EcoT38I	GRGCYC	1 cut(s)	2481
ErhI	CCWWGG	4 cut(s)	801, 1329, 1760, 3151
FaqI	GGGAC	2 cut(s)	1400, 3234
FauI	CCCGC	1 cut(s)	1630
FbaI	TGATCA	5 cut(s)	1492, 1981, 2299, 2356, 3196
FriOI	GRGCYC	1 cut(s)	2481
FspBI	CTAG	6 cut(s)	1746, 2313, 2604, 2762, 3108, 3671
GlaI	GCGC	3 cut(s)	789, 1103, 3411
GsaI	CCCAGC	2 cut(s)	387, 2153
GsuI	CTGGAG	4 cut(s)	395, 689, 803, 2981
HaeII	RGCGCY	1 cut(s)	3413
HaeIII	GGCC	5 cut(s)	1722, 1889, 2321, 3150, 3156
HapII	CCGG	2 cut(s)	2827, 3279
HgaI	GACGC	3 cut(s)	740, 3352, 3462
HhaI	GCGC	3 cut(s)	790, 1104, 3412
Hin1I	GRCGYC	1 cut(s)	3454
Hin6I	GCGC	3 cut(s)	788, 1102, 3410
HinP1I	GCGC	3 cut(s)	788, 1102, 3410
HincII	GTYRAC	1 cut(s)	3342
HindII	GTYRAC	1 cut(s)	3342
HindIII	AAGCTT	4 cut(s)	743, 846, 1244, 2426
HinfI	GANTC	9 cut(s)	455, 1016, 1057, 2011, 2290, 2365, 3077, 3292, 3625
HpaII	CCGG	2 cut(s)	2827, 3279
HphI	GGTGA	5 cut(s)	1520, 1762, 2579, 3038, 3181
Hpy166II	GTNNAC	5 cut(s)	675, 1627, 1830, 2944, 3342
Hpy8I	GTNNAC	5 cut(s)	675, 1627, 1830, 2944, 3342
Hpy99I	CGWCG	2 cut(s)	1913, 3456
HpyCH4III	ACNGT	6 cut(s)	1864, 1913, 2663, 2909, 2931, 3331
HpyCH4IV	ACGT	6 cut(s)	1264, 1354, 1629, 1730, 2864, 2986
HpySE526I	ACGT	6 cut(s)	1264, 1354, 1629, 1730, 2864, 2986
Hsp92I	GRCGYC	1 cut(s)	3454
HspAI	GCGC	3 cut(s)	788, 1102, 3410
Ksp22I	TGATCA	5 cut(s)	1492, 1981, 2299, 2356, 3196
LguI	GCTCTTC	1 cut(s)	1478
LmnI	GCTCC	5 cut(s)	401, 1099, 1762, 3382, 3566
MaeI	CTAG	6 cut(s)	1746, 2313, 2604, 2762, 3108, 3671
MaeII	ACGT	6 cut(s)	1264, 1354, 1629, 1730, 2864, 2986
MaeIII	GTNAC	7 cut(s)	149, 173, 1172, 1350, 1726, 1765, 2341
MfeI	CAATTG	2 cut(s)	82, 303
MhlI	GDGCHC	3 cut(s)	213, 1407, 2481
MlsI	TGGCCA	3 cut(s)	1889, 3150, 3156
MluNI	TGGCCA	3 cut(s)	1889, 3150, 3156
MlyI	GAGTC	3 cut(s)	2284, 2359, 3286
MmeI	TCCRAC	4 cut(s)	2044, 3418, 3475, 3523
Mox20I	TGGCCA	3 cut(s)	1889, 3150, 3156
MroXI	GAANNNNTTC	3 cut(s)	122, 1212, 2644
MscI	TGGCCA	3 cut(s)	1889, 3150, 3156
MslI	CAYNNNNRTG	3 cut(s)	201, 497, 2075
Msp20I	TGGCCA	3 cut(s)	1889, 3150, 3156
MspCI	CTTAAG	3 cut(s)	476, 2201, 2504
MspI	CCGG	2 cut(s)	2827, 3279
MspR9I	CCNGG	5 cut(s)	1506, 1566, 2828, 3280, 3458
MunI	CAATTG	2 cut(s)	82, 303
Mva1269I	GAATGC	3 cut(s)	2032, 2224, 3582
MvaI	CCWGG	3 cut(s)	1506, 1566, 3458
MvnI	CGCG	1 cut(s)	1104
NciI	CCSGG	2 cut(s)	2828, 3280
NcoI	CCATGG	2 cut(s)	1329, 3151
NlaIV	GGNNCC	5 cut(s)	212, 1700, 1758, 1794, 3222
NmuCI	GTSAC	4 cut(s)	149, 173, 1172, 2341
NspI	RCATGY	1 cut(s)	2439
OliI	CACNNNNGTG	1 cut(s)	497
PaeR7I	CTCGAG	2 cut(s)	495, 2480
PagI	TCATGA	2 cut(s)	1065, 3199
PaqCI	CACCTGC	1 cut(s)	3014
PciSI	GCTCTTC	1 cut(s)	1478
PctI	GAATGC	3 cut(s)	2032, 2224, 3582
PdmI	GAANNNNTTC	3 cut(s)	122, 1212, 2644
PfeI	GAWTC	6 cut(s)	455, 1016, 1057, 2011, 3077, 3625
PflFI	GACNNNGTC	1 cut(s)	3295
PfoI	TCCNGGA	1 cut(s)	2826
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	2284, 2359, 3286
PpsI	GAGTC	3 cut(s)	2284, 2359, 3286
Ppu21I	YACGTR	1 cut(s)	1355
PsiI	TTATAA	3 cut(s)	20, 1374, 3485
Psp124BI	GAGCTC	1 cut(s)	2481
Psp6I	CCWGG	3 cut(s)	1504, 1564, 3456
PspFI	CCCAGC	2 cut(s)	383, 2149
PspGI	CCWGG	3 cut(s)	1504, 1564, 3456
PspN4I	GGNNCC	5 cut(s)	212, 1700, 1758, 1794, 3222
PspPI	GGNCC	1 cut(s)	3221
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	3 cut(s)	1002, 1550, 1624
PstNI	CAGNNNCTG	2 cut(s)	2593, 2773
PsyI	GACNNNGTC	1 cut(s)	3295
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	8 cut(s)	584, 674, 1294, 1829, 2317, 2813, 3425, 3657
RsaNI	GTAC	8 cut(s)	583, 673, 1293, 1828, 2316, 2812, 3424, 3656
RseI	CAYNNNNRTG	3 cut(s)	201, 497, 2075
SacI	GAGCTC	1 cut(s)	2481
SapI	GCTCTTC	1 cut(s)	1478
Sau96I	GGNCC	1 cut(s)	3221
ScaI	AGTACT	2 cut(s)	584, 2813
SchI	GAGTC	3 cut(s)	2284, 2359, 3286
ScrFI	CCNGG	5 cut(s)	1506, 1566, 2828, 3280, 3458
SduI	GDGCHC	3 cut(s)	213, 1407, 2481
SfcI	CTRYAG	5 cut(s)	40, 935, 998, 1546, 1620
Sfr274I	CTCGAG	2 cut(s)	495, 2480
SinI	GGWCC	1 cut(s)	3221
SlaI	CTCGAG	2 cut(s)	495, 2480
SmiMI	CAYNNNNRTG	3 cut(s)	201, 497, 2075
SmlI	CTYRAG	9 cut(s)	476, 495, 914, 1031, 2060, 2201, 2389, 2480, 2504
SmoI	CTYRAG	9 cut(s)	476, 495, 914, 1031, 2060, 2201, 2389, 2480, 2504
SpeI	ACTAGT	1 cut(s)	3670
SsiI	CCGC	4 cut(s)	289, 1637, 2512, 2546
SspI	AATATT	1 cut(s)	3652
SspMI	CTAG	6 cut(s)	1746, 2313, 2604, 2762, 3108, 3671
SstI	GAGCTC	1 cut(s)	2481
StyD4I	CCNGG	5 cut(s)	1504, 1564, 2826, 3278, 3456
StyI	CCWWGG	4 cut(s)	801, 1329, 1760, 3151
TaaI	ACNGT	6 cut(s)	1864, 1913, 2663, 2909, 2931, 3331
TaiI	ACGT	6 cut(s)	1267, 1357, 1632, 1733, 2867, 2989
TatI	WGTACW	6 cut(s)	582, 672, 1827, 2811, 3423, 3655
TfiI	GAWTC	6 cut(s)	455, 1016, 1057, 2011, 3077, 3625
TscAI	CASTG	6 cut(s)	450, 550, 1629, 1716, 1837, 2350
TseFI	GTSAC	4 cut(s)	149, 173, 1172, 2341
Tsp45I	GTSAC	4 cut(s)	149, 173, 1172, 2341
TspGWI	ACGGA	2 cut(s)	284, 3649
TspRI	CASTG	6 cut(s)	450, 550, 1629, 1716, 1837, 2350
Tth111I	GACNNNGTC	1 cut(s)	3295
Vha464I	CTTAAG	3 cut(s)	476, 2201, 2504
VpaK11BI	GGWCC	1 cut(s)	3221
XapI	RAATTY	8 cut(s)	367, 1008, 1225, 1528, 1780, 1814, 2675, 2971
XceI	RCATGY	1 cut(s)	2439
XhoI	CTCGAG	2 cut(s)	495, 2480
XmnI	GAANNNNTTC	3 cut(s)	122, 1212, 2644
XspI	CTAG	6 cut(s)	1746, 2313, 2604, 2762, 3108, 3671
ZrmI	AGTACT	2 cut(s)	584, 2813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.