pycom03g11480

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
11273616 .. 11277716
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11480.3

Sequence Viewer

Length: 1509 bp
ATGGAACAACTTAAGCAGGACATTGCTAATGCTAATAAGCAGAAGAATCTGATTTCCAAAGCTTGTGGGAATAAGAAAAAATCACTGGCGGATGTGGAGACTCAAATTACTCAGCTTAGAGCCAGTGTGGCCATTAAGAGAGCTGAAATGGGCACAGATCTCCTTGATCATTTATCTCCAGAGGAGAAGGATCTTCTCTCAAGGTTAAACCCTGAAATAGCGGATCTTAAAGAGAAGCTTGTTTCATGCAAGACGGATCGTTTTGAGACTGAAACAATAAAGGCAGAGCTGGAGACTAATTTAACCACAAACCTTGAGAGGCGGAGGCAAGAACTAGAGGCCATAATATCTTCTGTGGAGACTGACAATTATAACGGTGAAGCTGAAATTAAGACTCAGGAACTTAATGATGCTGAATTATTGGTTAAAGATGCAACAGAGCAGCTCAAAAGAGTTTCTGAAACTATAGATAGCAAGTCAAAGCATCTCAAGAGAATTAAAGATGAAAAGACTGCGTTAAAGACTTTGGAAGACAAGTATGAGAGGACACTTCAGGATGAAGCCAAAGAGCTAGAGCAAATGTTGAGTAAAAGAAATATGTTTCTTGCAAAACAAGAAGAATACTCAAAGAAAATCAGGGAATTAGGTCCATTGTCATCGGATGCTTTTGAAGCGTATAAGCGCAGGGGCATCAAAGAGTTGCATAAAGCGCTGCATAGATGCAATGAACAACTGCAACAGTTTAGTCATGTCAACAAGAAAGCACTTGATCAATATGTAAATTTTACAGAGCAACGAGAAGAGCTCCAGAAGAGGCAAGCTGAACTGAAAGCGGGTGATCAGAAAATTGATGAGCTTATAAAGGTTTTGGATCAAAGGAAAGATGAATCAATAGAACGTACTTTTAAAGGTGTTGCTAGGCACTTCCGAGAAGTTTTCTCAGAACTTGTGCAAGGTGGCCATGGGCACCTTGTTATGATGAAGAAAAAGGATGGTCAGCATGGTGATGATGAGCAGGATGAGGATGGACCACGTGAAGTGGATTTGGAGGGAAGAGTCGAAAAATATATTGGTGTAAAAGTGAAGGTTTCTTTCACTGGACAAGGGGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCGCTGACACTTATTTTTGCCATCCAGCGATGTGATCCTGCCCCATTTTATCTTTTTGATGAAATAGATGCAGCACTGGATCCTCAGTACAGAACCGCTGTTGGAAATATGATCCGACGCCTGGCAGACATAGCAAACACTCAATTTATAACCACAACATTCCGGCCAGAGCTTGTGAAAGTTTCTGACAAGATATATGCTGTTGAACATAAAAACAGGGTGAGCCGTGTCAACGTTGCATCGAAGGACGATGCATTGGACTTCATAGAGCGTGACCAGTCTCACAATGCGGAGCGTGTATCAAGAACAGAAAAGACGGCTAGAGCAATCTTTTTTTCGGTAAATTCACAATGA

Protein Analysis

503

Amino Acids

57.6

Weight (kDa)

6.34

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 372, 860, 1304
AccB1I GGYRCC 1 cut(s) 966
AciI CCGC 6 cut(s) 89, 221, 322, 833, 1251, 1445
AclI AACGTT 1 cut(s) 1389
AclWI GGATC 8 cut(s) 198, 231, 264, 879, 1184, 1229, 1242, 1261
AcoI YGGCCR 3 cut(s) 129, 958, 1319
AcsI RAATTY 2 cut(s) 781, 1498
AcuI CTGAAG 1 cut(s) 536
AcvI CACGTG 1 cut(s) 1034
AcyI GRCGYC 1 cut(s) 1273
AfaI GTAC 2 cut(s) 901, 1244
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 1276
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 671, 1361
AjnI CCWGG 1 cut(s) 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 1053, 1085
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 6 cut(s) 92, 260, 287, 353, 1103, 1440
AlwI GGATC 8 cut(s) 198, 231, 264, 879, 1184, 1229, 1242, 1261
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 4 cut(s) 129, 339, 958, 1319
ApeKI GCWGC 3 cut(s) 442, 712, 1226
ApoI RAATTY 2 cut(s) 781, 1498
AspLEI GCGC 3 cut(s) 684, 712, 1159
AspS9I GGNCC 2 cut(s) 647, 1028
AsuHPI GGTGA 4 cut(s) 389, 848, 1016, 1387
AvaII GGWCC 2 cut(s) 647, 1028
BaeGI GKGCMC 2 cut(s) 155, 969
BalI TGGCCA 2 cut(s) 131, 960
BamHI GGATCC 1 cut(s) 1234
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 807
BbrPI CACGTG 1 cut(s) 1034
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 454, 699, 1238
BccI CCATC 3 cut(s) 986, 1019, 1184
BceAI ACGGC 2 cut(s) 1365, 1488
BciT130I CCWGG 1 cut(s) 1277
BclI TGATCA 3 cut(s) 166, 769, 838
BcoDI GTCTC 6 cut(s) 92, 260, 287, 353, 1103, 1440
BfaI CTAG 4 cut(s) 335, 572, 918, 1476
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 713
BfrI CTTAAG 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 443, 713, 1227
BlsI GCNGC 3 cut(s) 444, 714, 1228
Bme1390I CCNGG 1 cut(s) 1277
Bme18I GGWCC 2 cut(s) 647, 1028
BmgT120I GGNCC 2 cut(s) 647, 1028
BmiI GGNNCC 2 cut(s) 968, 1236
BmrFI CCNGG 1 cut(s) 1277
BmsI GCATC 9 cut(s) 400, 421, 493, 652, 699, 710, 1213, 1396, 1403
BpiI GAAGAC 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 789, 821
BpmI CTGGAG 3 cut(s) 162, 311, 791
BpuEI CTTGAG 3 cut(s) 184, 335, 473
BsaAI YACGTR 1 cut(s) 1034
BsaHI GRCGYC 1 cut(s) 1273
BsaJI CCNNGG 1 cut(s) 961
BsaXI ACNNNNNCTCC 2 cut(s) 1100, 1130
Bsc4I CCNNNNNNNGG 1 cut(s) 1276
Bse1I ACTGG 5 cut(s) 90, 123, 1102, 1236, 1432
Bse3DI GCAATG 2 cut(s) 21, 730
BseBI CCWGG 1 cut(s) 1277
BseDI CCNNGG 1 cut(s) 961
BseGI GGATG 7 cut(s) 97, 562, 667, 997, 1024, 1030, 1176
BseLI CCNNNNNNNGG 1 cut(s) 1276
BseMI GCAATG 2 cut(s) 21, 730
BseMII CTCAG 5 cut(s) 125, 410, 954, 1127, 1253
BseNI ACTGG 5 cut(s) 90, 123, 1102, 1236, 1432
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 2 cut(s) 155, 969
BseXI GCAGC 3 cut(s) 454, 699, 1238
BshFI GGCC 4 cut(s) 131, 341, 960, 1321
BshNI GGYRCC 1 cut(s) 966
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 1 cut(s) 1318
BslI CCNNNNNNNGG 1 cut(s) 1276
BsmAI GTCTC 6 cut(s) 92, 260, 287, 353, 1103, 1440
BsnI GGCC 4 cut(s) 131, 341, 960, 1321
Bsp1286I GDGCHC 3 cut(s) 155, 807, 969
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 6 cut(s) 89, 221, 322, 833, 1251, 1445
BspANI GGCC 4 cut(s) 131, 341, 960, 1321
BspCNI CTCAG 5 cut(s) 124, 409, 953, 1126, 1252
BspLI GGNNCC 2 cut(s) 968, 1236
BspPI GGATC 8 cut(s) 198, 231, 264, 879, 1184, 1229, 1242, 1261
BspQI GCTCTTC 1 cut(s) 795
BspT107I GGYRCC 1 cut(s) 966
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 21, 730
BsrI ACTGG 5 cut(s) 90, 123, 1102, 1236, 1432
BssECI CCNNGG 1 cut(s) 961
BssNI GRCGYC 1 cut(s) 1273
BssT1I CCWWGG 1 cut(s) 961
Bst2UI CCWGG 1 cut(s) 1277
Bst4CI ACNGT 3 cut(s) 377, 741, 1150
Bst6I CTCTTC 3 cut(s) 795, 806, 1048
BstACI GRCGYC 1 cut(s) 1273
BstAFI CTTAAG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 6 cut(s) 111, 116, 396, 940, 1113, 1239
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 7 cut(s) 97, 562, 667, 997, 1024, 1030, 1176
BstH2I RGCGCY 1 cut(s) 713
BstHHI GCGC 3 cut(s) 684, 712, 1159
BstMAI GTCTC 6 cut(s) 92, 260, 287, 353, 1103, 1440
BstMWI GCNNNNNNNGC 4 cut(s) 128, 671, 709, 1286
BstNI CCWGG 1 cut(s) 1277
BstSCI CCNGG 1 cut(s) 1275
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 2 cut(s) 155, 969
BstV1I GCAGC 3 cut(s) 454, 699, 1238
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 4 cut(s) 157, 190, 223, 1234
BstYI RGATCY 4 cut(s) 157, 190, 223, 1234
BsuRI GGCC 4 cut(s) 131, 341, 960, 1321
BtgI CCRYGG 1 cut(s) 961
BtgZI GCGATG 1 cut(s) 1198
BtsCI GGATG 7 cut(s) 97, 562, 667, 997, 1024, 1030, 1176
BtsIMutI CAGTG 4 cut(s) 83, 130, 1095, 1229
Cac8I GCNNGC 1 cut(s) 819
CfoI GCGC 3 cut(s) 684, 712, 1159
Cfr13I GGNCC 2 cut(s) 647, 1028
CseI GACGC 1 cut(s) 1281
Csp6I GTAC 2 cut(s) 900, 1243
CspCI CAANNNNNGTGG 4 cut(s) 46, 81, 295, 330
CviAII CATG 5 cut(s) 246, 749, 962, 1001, 1120
CviQI GTAC 2 cut(s) 900, 1243
DdeI CTNAG 6 cut(s) 111, 116, 396, 940, 1113, 1239
DraI TTTAAA 1 cut(s) 907
EaeI YGGCCR 3 cut(s) 129, 958, 1319
Eam1104I CTCTTC 3 cut(s) 795, 806, 1048
EarI CTCTTC 3 cut(s) 795, 806, 1048
EciI GGCGGA 2 cut(s) 104, 337
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 647, 1028
Eco47III AGCGCT 1 cut(s) 711
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 536
Eco72I CACGTG 1 cut(s) 1034
EcoICRI GAGCTC 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 1275
EcoT14I CCWWGG 1 cut(s) 961
EcoT22I ATGCAT 1 cut(s) 1411
EcoT38I GRGCYC 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 961
FaeI CATG 5 cut(s) 249, 752, 965, 1004, 1123
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 5 cut(s) 245, 748, 961, 1000, 1119
FauI CCCGC 1 cut(s) 826
FbaI TGATCA 3 cut(s) 166, 769, 838
Fnu4HI GCNGC 3 cut(s) 443, 713, 1227
FokI GGATG 7 cut(s) 104, 569, 674, 1004, 1031, 1037, 1163
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 3 cut(s) 443, 713, 1227
FspBI CTAG 4 cut(s) 335, 572, 918, 1476
GlaI GCGC 3 cut(s) 683, 711, 1158
GluI GCNGC 3 cut(s) 443, 713, 1227
GsuI CTGGAG 3 cut(s) 162, 311, 791
HaeII RGCGCY 1 cut(s) 713
HaeIII GGCC 4 cut(s) 131, 341, 960, 1321
HapII CCGG 1 cut(s) 1318
HgaI GACGC 1 cut(s) 1281
HhaI GCGC 3 cut(s) 684, 712, 1159
Hin1I GRCGYC 1 cut(s) 1273
Hin1II CATG 5 cut(s) 249, 752, 965, 1004, 1123
Hin6I GCGC 3 cut(s) 682, 710, 1157
HinP1I GCGC 3 cut(s) 682, 710, 1157
HincII GTYRAC 2 cut(s) 754, 1387
HindII GTYRAC 2 cut(s) 754, 1387
HindIII AAGCTT 2 cut(s) 60, 236
HinfI GANTC 6 cut(s) 46, 100, 394, 887, 1056, 1111
HpaII CCGG 1 cut(s) 1318
HphI GGTGA 4 cut(s) 389, 848, 1016, 1387
Hpy166II GTNNAC 2 cut(s) 754, 1387
Hpy188I TCNGA 9 cut(s) 51, 460, 661, 843, 929, 943, 1143, 1271, 1342
Hpy188III TCNNGA 6 cut(s) 179, 398, 490, 554, 808, 1458
Hpy8I GTNNAC 2 cut(s) 754, 1387
Hpy99I CGWCG 1 cut(s) 1275
HpyAV CCTTC 3 cut(s) 181, 1078, 1393
HpyCH4III ACNGT 3 cut(s) 377, 741, 1150
HpyCH4IV ACGT 3 cut(s) 898, 1033, 1389
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 671, 709, 1286
HpyF3I CTNAG 6 cut(s) 111, 116, 396, 940, 1113, 1239
HpySE526I ACGT 3 cut(s) 898, 1033, 1389
Hsp92I GRCGYC 1 cut(s) 1273
Hsp92II CATG 5 cut(s) 249, 752, 965, 1004, 1123
HspAI GCGC 3 cut(s) 682, 710, 1157
Ksp22I TGATCA 3 cut(s) 166, 769, 838
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 810, 1447
Lsp1109I GCAGC 3 cut(s) 454, 699, 1238
LweI GCATC 9 cut(s) 400, 421, 493, 652, 699, 710, 1213, 1396, 1403
MaeI CTAG 4 cut(s) 335, 572, 918, 1476
MaeII ACGT 3 cut(s) 898, 1033, 1389
MaeIII GTNAC 1 cut(s) 1427
MboII GAAGA 9 cut(s) 55, 185, 342, 542, 629, 812, 823, 994, 1065
MflI RGATCY 4 cut(s) 157, 190, 223, 1234
MhlI GDGCHC 3 cut(s) 155, 807, 969
MlsI TGGCCA 2 cut(s) 131, 960
MluNI TGGCCA 2 cut(s) 131, 960
MlyI GAGTC 4 cut(s) 94, 388, 1065, 1105
MmeI TCCRAC 2 cut(s) 1237, 1294
MnlI CCTC 9 cut(s) 175, 312, 318, 331, 537, 807, 1015, 1042, 1248
Mox20I TGGCCA 2 cut(s) 131, 960
Mph1103I ATGCAT 1 cut(s) 1411
MscI TGGCCA 2 cut(s) 131, 960
MslI CAYNNNNRTG 1 cut(s) 1005
Msp20I TGGCCA 2 cut(s) 131, 960
MspA1I CMGCKG 1 cut(s) 1253
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 1318
MspR9I CCNGG 1 cut(s) 1277
MvaI CCWGG 1 cut(s) 1277
MwoI GCNNNNNNNGC 4 cut(s) 128, 671, 709, 1286
NcoI CCATGG 1 cut(s) 961
NlaIII CATG 5 cut(s) 249, 752, 965, 1004, 1123
NlaIV GGNNCC 2 cut(s) 968, 1236
NmuCI GTSAC 1 cut(s) 1427
NsiI ATGCAT 1 cut(s) 1411
PciSI GCTCTTC 1 cut(s) 795
PfeI GAWTC 2 cut(s) 46, 887
PflFI GACNNNGTC 1 cut(s) 1114
PkrI GCNGC 3 cut(s) 444, 714, 1228
PleI GAGTC 4 cut(s) 94, 388, 1064, 1105
PmaCI CACGTG 1 cut(s) 1034
PmlI CACGTG 1 cut(s) 1034
PpsI GAGTC 4 cut(s) 94, 388, 1064, 1105
Ppu21I YACGTR 1 cut(s) 1034
PsiI TTATAA 3 cut(s) 372, 860, 1304
Psp124BI GAGCTC 1 cut(s) 807
Psp1406I AACGTT 1 cut(s) 1389
Psp6I CCWGG 1 cut(s) 1275
PspCI CACGTG 1 cut(s) 1034
PspGI CCWGG 1 cut(s) 1275
PspN4I GGNNCC 2 cut(s) 968, 1236
PspPI GGNCC 2 cut(s) 647, 1028
PsuI RGATCY 4 cut(s) 157, 190, 223, 1234
PsyI GACNNNGTC 1 cut(s) 1114
RsaI GTAC 2 cut(s) 901, 1244
RsaNI GTAC 2 cut(s) 900, 1243
RseI CAYNNNNRTG 1 cut(s) 1005
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 795
SatI GCNGC 3 cut(s) 443, 713, 1227
Sau96I GGNCC 2 cut(s) 647, 1028
SchI GAGTC 4 cut(s) 94, 388, 1065, 1105
ScrFI CCNGG 1 cut(s) 1277
SduI GDGCHC 3 cut(s) 155, 807, 969
SfaNI GCATC 9 cut(s) 400, 421, 493, 652, 699, 710, 1213, 1396, 1403
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 2 cut(s) 647, 1028
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 4 cut(s) 11, 199, 314, 488
SmoI CTYRAG 4 cut(s) 11, 199, 314, 488
SsiI CCGC 6 cut(s) 89, 221, 322, 833, 1251, 1445
SspMI CTAG 4 cut(s) 335, 572, 918, 1476
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 1 cut(s) 1275
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 3 cut(s) 377, 741, 1150
TaiI ACGT 3 cut(s) 901, 1036, 1392
TaqI TCGA 2 cut(s) 1059, 1397
TatI WGTACW 1 cut(s) 1242
TfiI GAWTC 2 cut(s) 46, 887
TscAI CASTG 4 cut(s) 90, 130, 1102, 1236
TseFI GTSAC 1 cut(s) 1427
TseI GCWGC 3 cut(s) 442, 712, 1226
Tsp45I GTSAC 1 cut(s) 1427
TspDTI ATGAA 9 cut(s) 234, 519, 573, 741, 900, 995, 1136, 1230, 1408
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 4 cut(s) 90, 130, 1102, 1236
Tth111I GACNNNGTC 1 cut(s) 1114
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 647, 1028
XapI RAATTY 2 cut(s) 781, 1498
XspI CTAG 4 cut(s) 335, 572, 918, 1476
Zsp2I ATGCAT 1 cut(s) 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.