Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

14595827 .. 14606346

Gene Structure 10520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3390 bp

ATGCACATAAAGCAGATTATAATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACTGAGCCATTCAGTCCAAAAATCAATTGCGTTGTTGGTGCTAATGGGTCTGGAAAGACGAACTTTTTCCATGCAATTCAGTTTGTACTAAGTGACCTTTTCCAAAACCTTCGGAGTGACGATCGGCATACGCTACTCCATGAAGGTGCAGGGCACCAAGTCTTATCTTCATTTGTGGAGATTGTCTTCGATAACTCTGACAATCGAATAACGGATGATAAGGAGGAAGTGCGGTTGCGAAGGACAATTGGTTTAAAGAAGGATGAGTATTTCTTGAATGGAAAGCACATCACGAAAACCGAGGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCCAATCCATATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGATTCTGAGCGACTGGATTTACTTAAGGAAATCGGTGGCACTCGAGTGTATGAGGAGAGACGTCAAGAAAGTTTGAAAATCATGCAGGACACCGGTAGCAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAACTGGACGAAGAGAAAGAGGAACTTAGAAAGTATCAGCAACTTGACAAGCAGCGAAAATCTCTGGAGTACACTATGTATGACAAGGAACTTCAGGATGCTCGCCGAAGGCTGACAGAGGTTGAAGACGCTCGAAATAAGCTTTCTGAAACATCAACGCAAAAGTATAATAGCGTGCTGGAGGCGCATGAAAAGTCCAAGGACTTGGATAAGGCTTTGAAAGATCTGACAAAAGAGCTACAAGCTTTAAATAAAGAGAAAGAAGCAGTAGAAAAACGAAGAACAGAAGCAACAAAGAAACACACAGAGCTTGAGCTTGATGTCAAAGATCTACAGGAGAAGATATCTGGAAACATCCGAGCCAAAGAGGATGCTGTGAAACAACTACAAAGTCTGCAGAAAGAAATTCAGGATTCAATGGATGAGCTTGAGAAGATTAGTCCTCTGTATGAGAATCAAGTCATGAGGGAAAAGGAGATGACAAAGGGAATAATGGAGCGCGAGAAGCAGCTTAGCATACTTTATCAAAAACAAGGTCGTGCGACCCAGTTTCCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATCGATGATCTTGAACGAGTTCTTTCTTCAAATTTGGCCCAGGGAGTTTTAAAGAATAAGAATAGTGAAGAAAAGCATCATCCACACCAGGAGAAAAATCTTCAGGATGAAGTCAAACGTCTTAATTCTGAGTTGAATGAGCAGGGTACTTACATTGGATCTCGAAGAAATGAAATTACTACCATGGAGTGTGTCATCTCTCAGTTACGTGAAGGGTTCAGTCATTATAAAGCACAGAGGGACAAGATGCAGGATGAGCTCAAGACCCTATGGAAGAAAGAAACTGAGCTTTCTGCTGAAGTTGAGAAACTGAGAACAGAAGTTGAGAAGGCAGAGAAGAGCCTTGATCATGCAACTCCTGGTGATGTGAGGAGAGGGCTAAATTTTGTTCGTAAGATCTGCAGAGAGCATAATACTCTTGGGGTATTTGGCTGTGTTATTGAGCTGCTTGATTGTGAGAAAAAGTTATTTACTGCAGTGGACGTTGCTGCTGGGAACAGCTTATTTCATGTTGTGGTTGAAAATGATGATATATCAACTCAGATAATCAGGCACCTTAATTCACTGAAAGGTGGCCGTGTTACGTTTATCCCTCTGACTAGGGTGACGGCTCCAAGGGTAACTTATCCACAAAATTCAGATCTGGTTCCTTTGTTGAAGAGGTTAAAATTTCTTCCAAAGTACACTGCTGCATTTTCTCAGTTCCTTGTACCTGGCTTTGGACTAAGTTCAAAGACCAAGAGGTATGTTTTTGTGCTGGTATTTGCAAGAACAGTTGTTTGTCGAGATCTGGATGTGGCCACAAAGGTTGCTCGTACCAATGGTCTAGACTGCATCACTTTAGAAGGAGATCAAGTCAGCAAGAAGGGTGGAATGACAGGAGGATTTTATGATCATAGACACTCAAAATTGAACTTACAGATAGACAGGAAAATTAAAGATACAAGATCTAAGCTGGGGAAAATTGATGCTGAGCGAGCTCACAGCAAATTAAAACTGGAACAGCTTAAGCAGGACATTGTGAATGCTAATAAGAAGGAAAGTTTGATTTCTAAAGCACTTGGGAATAAGGAAAAATCACTTGCTGATGTGCAGACTCAAATTGATCAGCTTAGAGCTAGTATGGCCATAAAGAGGGCTGAAATGGGCACTGATCTCATTGATCATTTGACTCCAAAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGTGGATCGAACTGAGACTGAAGCAAGAAAGGCAGAGCTCGAGACTAATTTAACTATGAACCTTAAGAGGCGGAAGCAAGAATTAGAGGCAATAGTATCTTCTGCGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGGTTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGACGGTCAGTCAAGGAAATTGAGGAAAACTAAGGATGAAAAGACTAAGTGGAAGAACTCGGAAGACAACTATGAGAGGACATTTCAGGATGCAGCCAAAGAGCTAGAGCAGCAACTGAGTAAAAGAAATATCTATCTTGCTAAACAAGAAGAGTACTCAAAGAAAATCCGGGAATTGGGTGCATTGTCATCAGATGCTTTTGAAACGTATAAGCGAAGGAACATCAAAGAACTGCATAAAATGCTGCACAGATGCAATGAGCAACTGCAACGGTTTAGTCATGTAAACAAGAAAGCACTTGACCAGTATGTAAATTTTACAGAACAACGTGAAGAACTCCAGAGAAGGCAAGCTGAACTGGATGCAGGTGATGAGAAAATTGCAGAACTTATATCTTTCTTAGATCAAAGGAAGGATGAATCAATTGAACGCACTTTTAAAGGTGTTGCTAGGAACTTTCGAGAAGTTTTCTCTGAACTTGTGCAAGGTGGCCATGGTCACCTTCTCATGGTGAAAAGAAAGGTTTCTTTTACCGGGCAAGGAGAGACTCAGTCCATGAAGCAGTTGTCTGGGGGTCAGAAAACTGTTGTTGCGTTGACGCTTATCTTTGCAATCCAGCAATGTGATCCTGCTCCTTTCTATCTTTTCGATGAAATAGATGCAGCACTGGATCCTCAGTACAGAACTGCTGTTGGAAGTATCCTTTATGTCATACTTTGTGGAGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1129

Amino Acids

130.17

Weight (kDa)

8.68

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 300	2.1e-12	AAA ATPase domain
SMC_N	PF02463	2 - 1121	7.5e-56	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	6 - 289	1.8e-10	AAA domain
AAA_21	PF13304	27 - 63	6.2e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	539 - 667	3.4e-20	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	20, 1422
AarI	CACCTGC	1 cut(s)	3014
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	3014
AccB1I	GGYRCC	2 cut(s)	210, 1746
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	3 cut(s)	289, 2512, 2546
AclWI	GGATC	6 cut(s)	1360, 2388, 2454, 3278, 3323, 3336
AcoI	YGGCCR	4 cut(s)	1768, 1992, 2319, 3148
AcsI	RAATTY	7 cut(s)	367, 1008, 1225, 1576, 1828, 1862, 2971
AcuI	CTGAAG	4 cut(s)	680, 1280, 1512, 2481
AcyI	GRCGYC	1 cut(s)	514
AfaI	GTAC	9 cut(s)	144, 584, 674, 1342, 1877, 1905, 2011, 2813, 3338
AfiI	CCNNNNNNNGG	4 cut(s)	1913, 2328, 2833, 3166
AflII	CTTAAG	3 cut(s)	476, 2201, 2504
AgeI	ACCGGT	1 cut(s)	545
AhdI	GACNNNNNGTC	1 cut(s)	2665
AjnI	CCWGG	4 cut(s)	1233, 1281, 1552, 1906
AleI	CACNNNNGTG	1 cut(s)	497
Alw21I	GWGCWC	3 cut(s)	1455, 2176, 2481
Alw26I	GTCTC	4 cut(s)	505, 2450, 2477, 3197
AlwI	GGATC	6 cut(s)	1360, 2388, 2454, 3278, 3323, 3336
AlwNI	CAGNNNCTG	2 cut(s)	2593, 2773
Ama87I	CYCGRG	2 cut(s)	495, 2480
AoxI	GGCC	5 cut(s)	1230, 1768, 1992, 2319, 3148
ApoI	RAATTY	7 cut(s)	367, 1008, 1225, 1576, 1828, 1862, 2971
ArsI	GACNNNNNNTTYG	2 cut(s)	1123, 1155
AsiGI	ACCGGT	1 cut(s)	545
Asp700I	GAANNNNTTC	4 cut(s)	122, 1212, 2644, 3181
AspLEI	GCGC	2 cut(s)	790, 1104
AspS9I	GGNCC	1 cut(s)	1231
AsuC2I	CCSGG	2 cut(s)	2828, 3193
AsuHPI	GGTGA	6 cut(s)	1568, 1810, 2579, 3038, 3149, 3181
AvaI	CYCGRG	2 cut(s)	495, 2480
BaeGI	GKGCMC	2 cut(s)	213, 2345
BalI	TGGCCA	3 cut(s)	1994, 2321, 3150
BamHI	GGATCC	1 cut(s)	3328
BanI	GGYRCC	2 cut(s)	210, 1746
BanII	GRGCYC	3 cut(s)	1455, 2176, 2481
BauI	CACGAG	1 cut(s)	1170
BbsI	GAAGAC	3 cut(s)	235, 735, 2727
Bbv12I	GWGCWC	3 cut(s)	1455, 2176, 2481
BceAI	ACGGC	2 cut(s)	1755, 1818
BciT130I	CCWGG	4 cut(s)	1235, 1283, 1554, 1908
BciVI	GTATCC	1 cut(s)	3368
BclI	TGATCA	4 cut(s)	1540, 2086, 2299, 2356
BcnI	CCSGG	2 cut(s)	2828, 3193
BcoDI	GTCTC	4 cut(s)	505, 2450, 2477, 3197
BfaI	CTAG	6 cut(s)	1794, 2021, 2313, 2604, 2762, 3108
BfmI	CTRYAG	5 cut(s)	40, 935, 998, 1594, 1668
BfrI	CTTAAG	3 cut(s)	476, 2201, 2504
BfuAI	ACCTGC	1 cut(s)	3014
BfuI	GTATCC	1 cut(s)	3368
BglII	AGATCT	7 cut(s)	826, 931, 1590, 1834, 1981, 2141, 2413
BlpI	GCTNAGC	2 cut(s)	1115, 2166
BmcAI	AGTACT	2 cut(s)	584, 2813
Bme1390I	CCNGG	6 cut(s)	1235, 1283, 1554, 1908, 2828, 3193
BmeRI	GACNNNNNGTC	1 cut(s)	2665
BmeT110I	CYCGRG	2 cut(s)	495, 2480
BmgT120I	GGNCC	1 cut(s)	1231
BmiI	GGNNCC	5 cut(s)	212, 1748, 1806, 1842, 3330
BmrFI	CCNGG	6 cut(s)	1235, 1283, 1554, 1908, 2828, 3193
BmrI	ACTGGG	1 cut(s)	1144
BmuI	ACTGGG	1 cut(s)	1144
BpiI	GAAGAC	3 cut(s)	235, 735, 2727
BpmI	CTGGAG	3 cut(s)	689, 803, 2981
Bpu1102I	GCTNAGC	2 cut(s)	1115, 2166
BpuEI	CTTGAG	4 cut(s)	935, 1052, 1439, 2374
BpuMI	CCSGG	2 cut(s)	2828, 3193
Bsa29I	ATCGAT	1 cut(s)	1197
BsaAI	YACGTR	1 cut(s)	1403
BsaHI	GRCGYC	1 cut(s)	514
BsaJI	CCNNGG	7 cut(s)	357, 801, 1233, 1234, 1377, 1808, 3151
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	2034, 2064
Bsc4I	CCNNNNNNNGG	4 cut(s)	1913, 2328, 2833, 3166
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	8 cut(s)	378, 471, 612, 1150, 2196, 2962, 3021, 3330
Bse3DI	GCAATG	2 cut(s)	2920, 3284
BseBI	CCWGG	4 cut(s)	1235, 1283, 1554, 1908
BseCI	ATCGAT	1 cut(s)	1197
BseDI	CCNNGG	7 cut(s)	357, 801, 1233, 1234, 1377, 1808, 3151
BseLI	CCNNNNNNNGG	4 cut(s)	1913, 2328, 2833, 3166
BseMI	GCAATG	2 cut(s)	2920, 3284
BseNI	ACTGG	8 cut(s)	378, 471, 612, 1150, 2196, 2962, 3021, 3330
BseRI	GAGGAG	2 cut(s)	521, 1579
BseSI	GKGCMC	2 cut(s)	213, 2345
BseYI	CCCAGC	3 cut(s)	383, 1685, 2149
BsgI	GTGCAG	4 cut(s)	225, 437, 2306, 2888
Bsh1236I	CGCG	1 cut(s)	1104
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	1232, 1770, 1994, 2321, 3150
BshNI	GGYRCC	2 cut(s)	210, 1746
BshTI	ACCGGT	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	1197
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	3 cut(s)	1455, 2176, 2481
BsiHKCI	CYCGRG	2 cut(s)	495, 2480
BsiSI	CCGG	3 cut(s)	546, 2827, 3192
BslFI	GGGAC	1 cut(s)	1448
BslI	CCNNNNNNNGG	4 cut(s)	1913, 2328, 2833, 3166
BsmAI	GTCTC	4 cut(s)	505, 2450, 2477, 3197
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	1448
BsmI	GAATGC	1 cut(s)	2224
BsnI	GGCC	5 cut(s)	1232, 1770, 1994, 2321, 3150
BsoBI	CYCGRG	2 cut(s)	495, 2480
Bsp1286I	GDGCHC	5 cut(s)	213, 1455, 2176, 2345, 2481
Bsp1720I	GCTNAGC	2 cut(s)	1115, 2166
Bsp19I	CCATGG	2 cut(s)	1377, 3151
BspACI	CCGC	3 cut(s)	289, 2512, 2546
BspANI	GGCC	5 cut(s)	1232, 1770, 1994, 2321, 3150
BspDI	ATCGAT	1 cut(s)	1197
BspFNI	CGCG	1 cut(s)	1104
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	5 cut(s)	212, 1748, 1806, 1842, 3330
BspMAI	CTGCAG	3 cut(s)	1002, 1598, 1672
BspMI	ACCTGC	1 cut(s)	3014
BspPI	GGATC	6 cut(s)	1360, 2388, 2454, 3278, 3323, 3336
BspQI	GCTCTTC	1 cut(s)	1526
BspT107I	GGYRCC	2 cut(s)	210, 1746
BspTI	CTTAAG	3 cut(s)	476, 2201, 2504
BsrDI	GCAATG	2 cut(s)	2920, 3284
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	8 cut(s)	378, 471, 612, 1150, 2196, 2962, 3021, 3330
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	7 cut(s)	357, 801, 1233, 1234, 1377, 1808, 3151
BssNI	GRCGYC	1 cut(s)	514
BssSI	CACGAG	1 cut(s)	1170
BssT1I	CCWWGG	4 cut(s)	801, 1377, 1808, 3151
Bst2BI	CACGAG	1 cut(s)	1170
Bst2UI	CCWGG	4 cut(s)	1235, 1283, 1554, 1908
Bst4CI	ACNGT	4 cut(s)	1969, 2663, 2931, 3244
Bst6I	CTCTTC	5 cut(s)	609, 1526, 1847, 2635, 2802
BstACI	GRCGYC	1 cut(s)	514
BstAFI	CTTAAG	3 cut(s)	476, 2201, 2504
BstAPI	GCANNNNNTGC	1 cut(s)	2899
BstBAI	YACGTR	1 cut(s)	1403
BstC8I	GCNNGC	4 cut(s)	706, 779, 2172, 3009
BstDSI	CCRYGG	2 cut(s)	1377, 3151
BstEII	GGTNACC	1 cut(s)	3155
BstFNI	CGCG	1 cut(s)	1104
BstHHI	GCGC	2 cut(s)	790, 1104
BstMAI	GTCTC	4 cut(s)	505, 2450, 2477, 3197
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 787, 1108, 1450, 2171, 2318, 2471, 2767, 2899
BstNI	CCWGG	4 cut(s)	1235, 1283, 1554, 1908
BstNSI	RCATGY	1 cut(s)	2439
BstPI	GGTNACC	1 cut(s)	3155
BstSCI	CCNGG	6 cut(s)	1233, 1281, 1552, 1906, 2826, 3191
BstSFI	CTRYAG	5 cut(s)	40, 935, 998, 1594, 1668
BstSLI	GKGCMC	2 cut(s)	213, 2345
BstUI	CGCG	1 cut(s)	1104
BstV2I	GAAGAC	3 cut(s)	235, 735, 2727
BstXI	CCANNNNNNTGG	1 cut(s)	808
Bsu15I	ATCGAT	1 cut(s)	1197
BsuI	GTATCC	1 cut(s)	3368
BsuRI	GGCC	5 cut(s)	1232, 1770, 1994, 2321, 3150
BsuTUI	ATCGAT	1 cut(s)	1197
BtgI	CCRYGG	2 cut(s)	1377, 3151
BtsI	GCAGTG	2 cut(s)	1677, 1878
BtsIMutI	CAGTG	6 cut(s)	443, 1677, 1757, 1878, 2343, 3323
BveI	ACCTGC	1 cut(s)	3014
Cac8I	GCNNGC	4 cut(s)	706, 779, 2172, 3009
CaiI	CAGNNNCTG	2 cut(s)	2593, 2773
CciI	TCATGA	1 cut(s)	1065
CfoI	GCGC	2 cut(s)	790, 1104
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	1231
ClaI	ATCGAT	1 cut(s)	1197
CseI	GACGC	2 cut(s)	740, 3265
Csp6I	GTAC	9 cut(s)	143, 583, 673, 1341, 1876, 1904, 2010, 2812, 3337
CspAI	ACCGGT	1 cut(s)	545
CspCI	CAANNNNNGTGG	4 cut(s)	1984, 2019, 2044, 2079
CviQI	GTAC	9 cut(s)	143, 583, 673, 1341, 1876, 1904, 2010, 2812, 3337
DraI	TTTAAA	4 cut(s)	312, 852, 1245, 3097
DriI	GACNNNNNGTC	1 cut(s)	2665
EaeI	YGGCCR	4 cut(s)	1768, 1992, 2319, 3148
Eam1104I	CTCTTC	5 cut(s)	609, 1526, 1847, 2635, 2802
Eam1105I	GACNNNNNGTC	1 cut(s)	2665
EarI	CTCTTC	5 cut(s)	609, 1526, 1847, 2635, 2802
EciI	GGCGGA	1 cut(s)	2527
Ecl136II	GAGCTC	3 cut(s)	1453, 2174, 2479
Eco130I	CCWWGG	4 cut(s)	801, 1377, 1808, 3151
Eco24I	GRGCYC	3 cut(s)	1455, 2176, 2481
Eco32I	GATATC	1 cut(s)	948
Eco53kI	GAGCTC	3 cut(s)	1453, 2174, 2479
Eco57I	CTGAAG	4 cut(s)	680, 1280, 1512, 2481
Eco88I	CYCGRG	2 cut(s)	495, 2480
Eco91I	GGTNACC	1 cut(s)	3155
EcoICRI	GAGCTC	3 cut(s)	1453, 2174, 2479
EcoO65I	GGTNACC	1 cut(s)	3155
EcoRII	CCWGG	4 cut(s)	1233, 1281, 1552, 1906
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	4 cut(s)	801, 1377, 1808, 3151
EcoT38I	GRGCYC	3 cut(s)	1455, 2176, 2481
ErhI	CCWWGG	4 cut(s)	801, 1377, 1808, 3151
Esp3I	CGTCTC	1 cut(s)	505
FalI	AAGNNNNNCTT	8 cut(s)	104, 136, 612, 644, 1801, 1833, 2412, 2444
FaqI	GGGAC	1 cut(s)	1448
FbaI	TGATCA	4 cut(s)	1540, 2086, 2299, 2356
FriOI	GRGCYC	3 cut(s)	1455, 2176, 2481
FspBI	CTAG	6 cut(s)	1794, 2021, 2313, 2604, 2762, 3108
GlaI	GCGC	2 cut(s)	789, 1103
GsaI	CCCAGC	3 cut(s)	387, 1689, 2153
GsuI	CTGGAG	3 cut(s)	689, 803, 2981
HaeIII	GGCC	5 cut(s)	1232, 1770, 1994, 2321, 3150
HapII	CCGG	3 cut(s)	546, 2827, 3192
HgaI	GACGC	2 cut(s)	740, 3265
HhaI	GCGC	2 cut(s)	790, 1104
Hin1I	GRCGYC	1 cut(s)	514
Hin6I	GCGC	2 cut(s)	788, 1102
HinP1I	GCGC	2 cut(s)	788, 1102
HincII	GTYRAC	1 cut(s)	3255
HindII	GTYRAC	1 cut(s)	3255
HindIII	AAGCTT	3 cut(s)	743, 846, 2426
HinfI	GANTC	7 cut(s)	455, 1016, 1057, 2290, 2365, 3077, 3205
HpaII	CCGG	3 cut(s)	546, 2827, 3192
HphI	GGTGA	6 cut(s)	1568, 1810, 2579, 3038, 3149, 3181
Hpy166II	GTNNAC	5 cut(s)	675, 1675, 1878, 2944, 3255
Hpy8I	GTNNAC	5 cut(s)	675, 1675, 1878, 2944, 3255
HpyCH4III	ACNGT	4 cut(s)	1969, 2663, 2931, 3244
HpyCH4IV	ACGT	7 cut(s)	514, 1312, 1402, 1677, 1778, 2864, 2986
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 787, 1108, 1450, 2171, 2318, 2471, 2767, 2899
HpySE526I	ACGT	7 cut(s)	514, 1312, 1402, 1677, 1778, 2864, 2986
Hsp92I	GRCGYC	1 cut(s)	514
HspAI	GCGC	2 cut(s)	788, 1102
Ksp22I	TGATCA	4 cut(s)	1540, 2086, 2299, 2356
LguI	GCTCTTC	1 cut(s)	1526
LmnI	GCTCC	4 cut(s)	401, 1099, 1810, 3295
MaeI	CTAG	6 cut(s)	1794, 2021, 2313, 2604, 2762, 3108
MaeII	ACGT	7 cut(s)	514, 1312, 1402, 1677, 1778, 2864, 2986
MaeIII	GTNAC	8 cut(s)	149, 173, 1172, 1398, 1774, 1798, 1813, 3155
MfeI	CAATTG	3 cut(s)	82, 303, 3081
MhlI	GDGCHC	5 cut(s)	213, 1455, 2176, 2345, 2481
MlsI	TGGCCA	3 cut(s)	1994, 2321, 3150
MluNI	TGGCCA	3 cut(s)	1994, 2321, 3150
MlyI	GAGTC	3 cut(s)	2284, 2359, 3199
MmeI	TCCRAC	1 cut(s)	3331
Mox20I	TGGCCA	3 cut(s)	1994, 2321, 3150
MroXI	GAANNNNTTC	4 cut(s)	122, 1212, 2644, 3181
MscI	TGGCCA	3 cut(s)	1994, 2321, 3150
MslI	CAYNNNNRTG	2 cut(s)	201, 497
Msp20I	TGGCCA	3 cut(s)	1994, 2321, 3150
MspCI	CTTAAG	3 cut(s)	476, 2201, 2504
MspI	CCGG	3 cut(s)	546, 2827, 3192
MspR9I	CCNGG	6 cut(s)	1235, 1283, 1554, 1908, 2828, 3193
MunI	CAATTG	3 cut(s)	82, 303, 3081
Mva1269I	GAATGC	1 cut(s)	2224
MvaI	CCWGG	4 cut(s)	1235, 1283, 1554, 1908
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	9 cut(s)	10, 787, 1108, 1450, 2171, 2318, 2471, 2767, 2899
NciI	CCSGG	2 cut(s)	2828, 3193
NcoI	CCATGG	2 cut(s)	1377, 3151
NlaIV	GGNNCC	5 cut(s)	212, 1748, 1806, 1842, 3330
NmuCI	GTSAC	5 cut(s)	149, 173, 1172, 1798, 3155
NspI	RCATGY	1 cut(s)	2439
OliI	CACNNNNGTG	1 cut(s)	497
PaeR7I	CTCGAG	2 cut(s)	495, 2480
PagI	TCATGA	1 cut(s)	1065
PaqCI	CACCTGC	1 cut(s)	3014
PasI	CCCWGGG	1 cut(s)	1234
PciSI	GCTCTTC	1 cut(s)	1526
PctI	GAATGC	1 cut(s)	2224
PdmI	GAANNNNTTC	4 cut(s)	122, 1212, 2644, 3181
PfeI	GAWTC	4 cut(s)	455, 1016, 1057, 3077
PflFI	GACNNNGTC	1 cut(s)	3208
PfoI	TCCNGGA	1 cut(s)	2826
PinAI	ACCGGT	1 cut(s)	545
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	2284, 2359, 3199
PpsI	GAGTC	3 cut(s)	2284, 2359, 3199
Ppu21I	YACGTR	1 cut(s)	1403
PsiI	TTATAA	2 cut(s)	20, 1422
Psp124BI	GAGCTC	3 cut(s)	1455, 2176, 2481
Psp6I	CCWGG	4 cut(s)	1233, 1281, 1552, 1906
PspEI	GGTNACC	1 cut(s)	3155
PspFI	CCCAGC	3 cut(s)	383, 1685, 2149
PspGI	CCWGG	4 cut(s)	1233, 1281, 1552, 1906
PspN4I	GGNNCC	5 cut(s)	212, 1748, 1806, 1842, 3330
PspPI	GGNCC	1 cut(s)	1231
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	3 cut(s)	1002, 1598, 1672
PstNI	CAGNNNCTG	2 cut(s)	2593, 2773
PsyI	GACNNNGTC	1 cut(s)	3208
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	9 cut(s)	144, 584, 674, 1342, 1877, 1905, 2011, 2813, 3338
RsaNI	GTAC	9 cut(s)	143, 583, 673, 1341, 1876, 1904, 2010, 2812, 3337
RseI	CAYNNNNRTG	2 cut(s)	201, 497
SacI	GAGCTC	3 cut(s)	1455, 2176, 2481
SapI	GCTCTTC	1 cut(s)	1526
Sau96I	GGNCC	1 cut(s)	1231
ScaI	AGTACT	2 cut(s)	584, 2813
SchI	GAGTC	3 cut(s)	2284, 2359, 3199
ScrFI	CCNGG	6 cut(s)	1235, 1283, 1554, 1908, 2828, 3193
SduI	GDGCHC	5 cut(s)	213, 1455, 2176, 2345, 2481
SfcI	CTRYAG	5 cut(s)	40, 935, 998, 1594, 1668
Sfr274I	CTCGAG	2 cut(s)	495, 2480
SlaI	CTCGAG	2 cut(s)	495, 2480
SmiMI	CAYNNNNRTG	2 cut(s)	201, 497
SmlI	CTYRAG	9 cut(s)	476, 495, 914, 1031, 1454, 2201, 2389, 2480, 2504
SmoI	CTYRAG	9 cut(s)	476, 495, 914, 1031, 1454, 2201, 2389, 2480, 2504
SsiI	CCGC	3 cut(s)	289, 2512, 2546
SspMI	CTAG	6 cut(s)	1794, 2021, 2313, 2604, 2762, 3108
SstI	GAGCTC	3 cut(s)	1455, 2176, 2481
StyD4I	CCNGG	6 cut(s)	1233, 1281, 1552, 1906, 2826, 3191
StyI	CCWWGG	4 cut(s)	801, 1377, 1808, 3151
TaaI	ACNGT	4 cut(s)	1969, 2663, 2931, 3244
TaiI	ACGT	7 cut(s)	517, 1315, 1405, 1680, 1781, 2867, 2989
TatI	WGTACW	6 cut(s)	142, 582, 672, 1875, 2811, 3336
TfiI	GAWTC	4 cut(s)	455, 1016, 1057, 3077
TscAI	CASTG	6 cut(s)	450, 1677, 1764, 1885, 2350, 3330
TseFI	GTSAC	5 cut(s)	149, 173, 1172, 1798, 3155
Tsp45I	GTSAC	5 cut(s)	149, 173, 1172, 1798, 3155
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	6 cut(s)	450, 1677, 1764, 1885, 2350, 3330
Tth111I	GACNNNGTC	1 cut(s)	3208
Vha464I	CTTAAG	3 cut(s)	476, 2201, 2504
XapI	RAATTY	7 cut(s)	367, 1008, 1225, 1576, 1828, 1862, 2971
XbaI	TCTAGA	1 cut(s)	2020
XceI	RCATGY	1 cut(s)	2439
XhoI	CTCGAG	2 cut(s)	495, 2480
XmnI	GAANNNNTTC	4 cut(s)	122, 1212, 2644, 3181
XspI	CTAG	6 cut(s)	1794, 2021, 2313, 2604, 2762, 3108
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	2 cut(s)	584, 2813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.