Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001925

Physical Location & Seq

Genomic Coordinates Forward (+)

13832984 .. 13844199

Gene Structure 11216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3537 bp

ATGCACATAAAGCAGATTATAATTGAAGGATTTAAGAGCTACAGAGAACAAGTTGCTACTGAGCCATTCAGTCCAAAAATCAATTGTGTTGTTGGTGCTAATGGGTCTGGAAAGACGAACTTTTTCCATGCAATTCAGTTTGTACTAAGTGACCTTTTCCAAAACCTTCGGAGTGACGATCGGCATACGCTACTCCATGAAGGTGCAGGGCACCAAGTCTTATCTGCATTTGTGGAGATTGTCTTCGATAACTCTGACAATCAAATAACAGATGATAAGGAGGAAGTGCGGTTGCGAAGGACAATTGGTTTAAAGAAGGATGAGTATTTCTTGAATGGAAAGCACATCACGAAAACTGAGGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCCAATCCATATTATGTTGTGCAGCAAGGAAAGATAGCATCCTTGACACTGATGAAAGATTCTGAGCGACTGGATTTACTTAAGGAAATCGGGGGCACTCGAGTGTATGAGGAGAGACGTCAAGAAAGTTTGAAAATCATGCAGGACACTGGTAGCAAAAGAAAGCAGATAATTCAAGTTGTTCAGTACTTGGATGAGAGATTAAAGGAACTGGACGAAGAGAAAGAGGAACTTAGAAAGTATCAGCAGCTTGACAAGCAGCGAAAATCTCTGGAGTACACTATATATGACAAGGAACTTCAGGATGCTCGCCAAAGGCTGACAGAGTTAGAAGATGCTCGAAATAAGCTTTCTGCAACATCGATGCAAAAGTACAATAGCGTGCTGGAGGCGCATGAAAAGTACAAGGACTTAGATAAGGCTTTGAAATATCTGACAAAAGAGCTACAAGCTTTAAATAAAGAGAAAGAAGCAGTAGAAAAACGAAGAACAGAAGCAACAAAGAAACACACAGAGCTTGAGCTTGATGTCAAAGATCTACAGGAGAAGATATCTGGAAACTTCCGAGCCAAAGAGGATGCTGTGAAACAACTACAAAGTCTGCAGAAAGAAATTCAGGATTCAATGGATGAGCTTGAGAAGATAAGTCCTCTGTATGAGAATCAAGTCATGAGGGAAAAGGAGATGACAAAGGGAATAAGAATAGTGAAGAAAAGCACCATCCACACCAGGTTTAAATACCAACTGGCGAAAAAGCTTCAGGATGAAGTCAAATGTCTTAATTCTGAGTTGAATGAGCAGGGTACTCACATTGGATCTCAAAGAAATGAAATTACTACCATGGAGTGTGTCATCTCTCAGTTATGTGAAGGGTTCAGTCATTATAAAGCACAGAGGGACAAGATGCAGGATGAGCTCAAGACCCTATGGAAGAAAGAAACTGAACTTTCTGCTGAAATTGAGAAACTGAGAACAGAAGTTGAGAAGGCAGAGAAGAGCCTTGATCATGCAACTCCTGGTGGTGTGAGGAGAGGGCTAAATTCTGTTCGTAAGATCTGCAGAGAGCATAATACTCCTGGGGTATTTGGTTGTGTTATTGAGCTGCTTGACTGTGAGGAAAAGTTATTTACTGCAGTGGACGTTGCTGCTGGGAACAGTTTATTTCATGTTGTGGTTGAAAATGATGATATATCAACTCAGACAATCAGGCACCTTAATTCACTGAAAGGTGGCCGTGTTACGTTTATCCCTCTGACTAGGGTGACGGCTCCAAGGGTGACTTATCCACAAAATTCAGATCTGGTTCCTTTGTTGAAGAGGTTAAAATTTCTTCCAAAGTACACTGCTGCATTTGCTCAGGTATTTGCAAGAACAGTTGTTTGTCGAGATCTGGATGTGGCCACAAAGGTTGCTCGTACCGATGGTCTAGACTGCATCACTTTAGAAGGAGATCAAGTCAGCAAGAAGGGTGGAATGACAGGAGGATTTTATGATCATAGACACTCAAAATTGAAGTTTATGAATCTAATCCGACAGAACGCAAAATCTATCAACTTGAAAGAAGAAGAACTTGAGAAAATCACATTTATGCTTGAAGATATCCTCTTAACTTTTATATATTTTCTCAACTGGAAAATTACAGATCTTGTAACTAAGCTGATAAAAATTGATGCTGAGCGAGCTCACAGCAAATTAAAACTGGAACAGCTTAAGCAGGACATTGTGAATGCTAATAAGAAGGAAAGTTTAATTTCTAAAGCACTTGGGAATAAGGAAAAATCACTTGCTGATGTGCAGACTCAAATTGATCAGCTTAGAGCTAGTATGGCCACGAAGAGGGCTGAAATGGGCACTGATCTCATTGATCATTTGACTCCAAAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCAAACTGAGACTGAAGCAAGAAAGGCAGAGCTCGAGACTAATTTAACTACGAACCTTAAGAGGCGGAAGCAAGAATTAGAGGCAATAGTATCTTCTGCGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGGTTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGACGGTCAGTCAAGGAAATTGAGGAAAACTAAGGATGAAAAGACTAAGTGGAAGAACTCGGAAGACAACTATGAGAGGACATTTCAGGACGCAGCCAAAGAGCTAGAGCAGCAACTGAGTAAAAGAAATATGTGTCTTGCTAAACAAGAAGAGTACTCAAAGAAAATCCGGGAATTGGGTGCATTGTCATCAGATGCTTTTGAAACGTATAAGCGAAGGAGCATCAAAGAACTGCATAAAATGCTGCACAGATGCAATGAGCAACTGCAACGGTTTAGTCATGTAAACAAGAAAGCACTTGACCAGTATGTAAATTTTACAGAACAACGTGAAGAACTCCAGAGAAGGCAAGCTGAACTGGATGCAGGTGATGAGAAAATTGTAGAACTTATATCTTTCTTAGATCAAAGGAAGGATGAATCAATAGAACGCACTTTTAAAGGTGTTGCTAGGAACTTTCGAGAAGTTTTCTCTGAACTTGTGCAAGGTGGCCATGGTCACCTTCTCATGGTGAAAAGAAAGGATGGTATCCATGCTGACAATCATCTGGATGAGGACGATGGACCAGAAACAGATAGATCTGAGAAATATATTGGTGTGAAAGTAAAGGTTTCTTTTACCGGGCAAGGAGAGACTCAGTCCATGAAGCAGCTGTCTGGGGGTCAGAAAACTGTTGTTGCGCTGGCGTTTATCTTTGCAATCCAGCAATGTGATCCTGCTCCTTTCTATCTTTTCGATGAAATAGATGCAGCGCTGGATCCTCAGTACAGAACTGCTGTTGGAAATATGATCCGACGCCTGGCAGATACAGAAACTACTCAATTTATAACTAAAACATTCCGACAAGAGCTTGTGAAAGTTTCTGACAAGATCTATGGTGTTACACATTCAAACAGGGTGAGCCGTGCCAATGTTATCTCGAAGGAAGAAGCATTAAACTTTATTGATCAAGACCAGTCTCACTATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1179

Amino Acids

135.77

Weight (kDa)

7.18

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	1 - 390	1e-08	AAA ATPase domain
SMC_N	PF02463	2 - 1153	1.1e-67	RecF/RecN/SMC N terminal domain
AAA_21	PF13304	27 - 62	7.4e-06	AAA domain, putative AbiEii toxin, Type IV TA system
Myosin_tail_1	PF01576	189 - 465	8.9e-06	Myosin tail
SMC_hinge	PF06470	491 - 603	4.1e-26	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27170 AT2G27170 AT2G27170 AT2G27170
fragaria_vesca	FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061 FvH4_5g11061
malus_domestica	MD03G1161700.v1.1 MD11G1177700.v1.1
prunus_persica	Prupe.6G149900_v2.0.a1 Prupe.6G149900_v2.0.a1
pyrus_communis	pycom03g11460 pycom03g11470 pycom03g11480 pycom11g15150 pycom11g15160 pycom11g15170
rosa_chinensis	RchiOBHm_Chr1g0362081 RchiOBHm_Chr7g0186721 RchiOBHm_Chr7g0186731
rosa_laevigata	RLG00000004823 RLG00000027673
rosa_multiflora	Rmu_co8477933.1_g000001 Rmu_sc0010614.1_g000002 Rmu_sc0017555.1_g000001 Rmu_sc0018615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00267880 Rroxscaffold_4G00294520
rosa_rugosa	Rorug01G0293400 Rorug01G0293500 Rorug06G0475900 Rorug06G0476000 Rorug06G0476100
rosa_samantha	Rh1AG303600 Rh1BG266900 Rh1CG285000 Rh1DG296900 Rh7AG064800 Rh7BG081000 Rh7CG082800 Rh7DG083900
rosa_wichuraiana	Rw1G027040 Rw7G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	20, 1281, 3389
AarI	CACCTGC	1 cut(s)	2918
AatII	GACGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	2918
AccB1I	GGYRCC	2 cut(s)	210, 1605
AciI	CCGC	4 cut(s)	289, 2348, 2416, 2450
AclWI	GGATC	7 cut(s)	1219, 2292, 2358, 3269, 3314, 3327, 3346
AcoI	YGGCCR	4 cut(s)	1627, 1794, 2223, 3052
AcsI	RAATTY	6 cut(s)	367, 1008, 1435, 1687, 1721, 2875
AcuI	CTGAAG	3 cut(s)	680, 1139, 2385
AcyI	GRCGYC	2 cut(s)	514, 3358
AfeI	AGCGCT	1 cut(s)	3315
AfiI	CCNNNNNNNGG	4 cut(s)	2232, 2737, 3070, 3361
AflII	CTTAAG	3 cut(s)	476, 2105, 2408
AhdI	GACNNNNNGTC	1 cut(s)	2569
AjnI	CCWGG	4 cut(s)	1124, 1411, 1471, 3360
AleI	CACNNNNGTG	1 cut(s)	497
Alw21I	GWGCWC	3 cut(s)	1314, 2080, 2385
Alw26I	GTCTC	5 cut(s)	505, 2354, 2381, 3188, 3525
AlwI	GGATC	7 cut(s)	1219, 2292, 2358, 3269, 3314, 3327, 3346
AlwNI	CAGNNNCTG	2 cut(s)	2497, 2677
Ama87I	CYCGRG	2 cut(s)	495, 2384
Aor51HI	AGCGCT	1 cut(s)	3315
AoxI	GGCC	4 cut(s)	1627, 1794, 2223, 3052
ApoI	RAATTY	6 cut(s)	367, 1008, 1435, 1687, 1721, 2875
Asp700I	GAANNNNTTC	2 cut(s)	122, 2548
AspLEI	GCGC	3 cut(s)	790, 3244, 3316
AspS9I	GGNCC	1 cut(s)	3125
AsuC2I	CCSGG	2 cut(s)	2732, 3184
AsuHPI	GGTGA	7 cut(s)	1669, 1684, 2483, 2942, 3053, 3085, 3472
AvaI	CYCGRG	2 cut(s)	495, 2384
AvaII	GGWCC	1 cut(s)	3125
BaeGI	GKGCMC	3 cut(s)	213, 494, 2249
BalI	TGGCCA	3 cut(s)	1796, 2225, 3054
BamHI	GGATCC	1 cut(s)	3319
BanI	GGYRCC	2 cut(s)	210, 1605
BanII	GRGCYC	3 cut(s)	1314, 2080, 2385
BbsI	GAAGAC	2 cut(s)	235, 2631
Bbv12I	GWGCWC	3 cut(s)	1314, 2080, 2385
BccI	CCATC	4 cut(s)	1124, 1811, 3080, 3116
BceAI	ACGGC	3 cut(s)	1614, 1677, 3450
BciT130I	CCWGG	4 cut(s)	1126, 1413, 1473, 3362
BciVI	GTATCC	1 cut(s)	3101
BclI	TGATCA	5 cut(s)	1399, 1888, 2203, 2260, 3508
BcnI	CCSGG	2 cut(s)	2732, 3184
BcoDI	GTCTC	5 cut(s)	505, 2354, 2381, 3188, 3525
BfaI	CTAG	6 cut(s)	1653, 1823, 2217, 2508, 2666, 3012
BfmI	CTRYAG	5 cut(s)	40, 935, 998, 1453, 1527
BfoI	RGCGCY	1 cut(s)	3317
BfrI	CTTAAG	3 cut(s)	476, 2105, 2408
BfuAI	ACCTGC	1 cut(s)	2918
BfuI	GTATCC	1 cut(s)	3101
BglII	AGATCT	8 cut(s)	931, 1449, 1693, 1783, 2038, 2317, 3140, 3432
BlpI	GCTNAGC	1 cut(s)	2070
BmcAI	AGTACT	2 cut(s)	584, 2717
Bme1390I	CCNGG	6 cut(s)	1126, 1413, 1473, 2732, 3184, 3362
Bme18I	GGWCC	1 cut(s)	3125
BmeRI	GACNNNNNGTC	1 cut(s)	2569
BmeT110I	CYCGRG	2 cut(s)	495, 2384
BmgT120I	GGNCC	1 cut(s)	3125
BmiI	GGNNCC	5 cut(s)	212, 1607, 1665, 1701, 3321
BmrFI	CCNGG	6 cut(s)	1126, 1413, 1473, 2732, 3184, 3362
BpiI	GAAGAC	2 cut(s)	235, 2631
BpmI	CTGGAG	3 cut(s)	689, 803, 2885
Bpu10I	CCTNAGC	1 cut(s)	1752
Bpu1102I	GCTNAGC	1 cut(s)	2070
BpuEI	CTTGAG	5 cut(s)	935, 1052, 1298, 1988, 2278
BpuMI	CCSGG	2 cut(s)	2732, 3184
Bsa29I	ATCGAT	1 cut(s)	758
BsaHI	GRCGYC	2 cut(s)	514, 3358
BsaJI	CCNNGG	4 cut(s)	1236, 1472, 1667, 3055
BsaXI	ACNNNNNCTCC	2 cut(s)	1836, 1866
Bsc4I	CCNNNNNNNGG	4 cut(s)	2232, 2737, 3070, 3361
Bse3DI	GCAATG	2 cut(s)	2824, 3275
BseBI	CCWGG	4 cut(s)	1126, 1413, 1473, 3362
BseCI	ATCGAT	1 cut(s)	758
BseDI	CCNNGG	4 cut(s)	1236, 1472, 1667, 3055
BseLI	CCNNNNNNNGG	4 cut(s)	2232, 2737, 3070, 3361
BseMI	GCAATG	2 cut(s)	2824, 3275
BseRI	GAGGAG	2 cut(s)	521, 1438
BseSI	GKGCMC	3 cut(s)	213, 494, 2249
BseYI	CCCAGC	2 cut(s)	383, 1544
BsgI	GTGCAG	4 cut(s)	225, 437, 2210, 2792
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	4 cut(s)	1629, 1796, 2225, 3054
BshNI	GGYRCC	2 cut(s)	210, 1605
BshVI	ATCGAT	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	3 cut(s)	1314, 2080, 2385
BsiHKCI	CYCGRG	2 cut(s)	495, 2384
BsiSI	CCGG	2 cut(s)	2731, 3183
BslFI	GGGAC	1 cut(s)	1307
BslI	CCNNNNNNNGG	4 cut(s)	2232, 2737, 3070, 3361
BsmAI	GTCTC	5 cut(s)	505, 2354, 2381, 3188, 3525
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	1307
BsmI	GAATGC	1 cut(s)	2128
BsnI	GGCC	4 cut(s)	1629, 1796, 2225, 3054
BsoBI	CYCGRG	2 cut(s)	495, 2384
Bsp1286I	GDGCHC	6 cut(s)	213, 494, 1314, 2080, 2249, 2385
Bsp1720I	GCTNAGC	1 cut(s)	2070
Bsp19I	CCATGG	2 cut(s)	1236, 3055
BspACI	CCGC	4 cut(s)	289, 2348, 2416, 2450
BspANI	GGCC	4 cut(s)	1629, 1796, 2225, 3054
BspDI	ATCGAT	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	1065
BspLI	GGNNCC	5 cut(s)	212, 1607, 1665, 1701, 3321
BspMAI	CTGCAG	3 cut(s)	1002, 1457, 1531
BspMI	ACCTGC	1 cut(s)	2918
BspPI	GGATC	7 cut(s)	1219, 2292, 2358, 3269, 3314, 3327, 3346
BspQI	GCTCTTC	1 cut(s)	1385
BspT107I	GGYRCC	2 cut(s)	210, 1605
BspTI	CTTAAG	3 cut(s)	476, 2105, 2408
BsrDI	GCAATG	2 cut(s)	2824, 3275
BssECI	CCNNGG	4 cut(s)	1236, 1472, 1667, 3055
BssNI	GRCGYC	2 cut(s)	514, 3358
BssT1I	CCWWGG	3 cut(s)	1236, 1667, 3055
Bst2UI	CCWGG	4 cut(s)	1126, 1413, 1473, 3362
Bst4CI	ACNGT	6 cut(s)	1508, 1553, 1771, 2567, 2835, 3235
Bst6I	CTCTTC	6 cut(s)	609, 1385, 1706, 2225, 2539, 2706
BstACI	GRCGYC	2 cut(s)	514, 3358
BstAFI	CTTAAG	3 cut(s)	476, 2105, 2408
BstAPI	GCANNNNNTGC	1 cut(s)	2803
BstC8I	GCNNGC	5 cut(s)	706, 779, 2076, 2913, 3246
BstDSI	CCRYGG	2 cut(s)	1236, 3055
BstEII	GGTNACC	1 cut(s)	3059
BstH2I	RGCGCY	1 cut(s)	3317
BstHHI	GCGC	3 cut(s)	790, 3244, 3316
BstMAI	GTCTC	5 cut(s)	505, 2354, 2381, 3188, 3525
BstMCI	CGRYCG	1 cut(s)	181
BstNI	CCWGG	4 cut(s)	1126, 1413, 1473, 3362
BstNSI	RCATGY	1 cut(s)	2343
BstPI	GGTNACC	1 cut(s)	3059
BstSCI	CCNGG	6 cut(s)	1124, 1411, 1471, 2730, 3182, 3360
BstSFI	CTRYAG	5 cut(s)	40, 935, 998, 1453, 1527
BstSLI	GKGCMC	3 cut(s)	213, 494, 2249
BstV2I	GAAGAC	2 cut(s)	235, 2631
Bsu15I	ATCGAT	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	3101
BsuRI	GGCC	4 cut(s)	1629, 1796, 2225, 3054
BsuTUI	ATCGAT	1 cut(s)	758
BtgI	CCRYGG	2 cut(s)	1236, 3055
BtsI	GCAGTG	2 cut(s)	1536, 1737
BtsIMutI	CAGTG	6 cut(s)	443, 543, 1536, 1616, 1737, 2247
BveI	ACCTGC	1 cut(s)	2918
Cac8I	GCNNGC	5 cut(s)	706, 779, 2076, 2913, 3246
CaiI	CAGNNNCTG	2 cut(s)	2497, 2677
CciI	TCATGA	1 cut(s)	1065
CfoI	GCGC	3 cut(s)	790, 3244, 3316
Cfr13I	GGNCC	1 cut(s)	3125
ClaI	ATCGAT	1 cut(s)	758
CseI	GACGC	2 cut(s)	2660, 3366
CsiI	ACCWGGT	1 cut(s)	1124
CspCI	CAANNNNNGTGG	4 cut(s)	1786, 1821, 1846, 1881
DraI	TTTAAA	4 cut(s)	312, 852, 1132, 3001
DriI	GACNNNNNGTC	1 cut(s)	2569
EaeI	YGGCCR	4 cut(s)	1627, 1794, 2223, 3052
Eam1104I	CTCTTC	6 cut(s)	609, 1385, 1706, 2225, 2539, 2706
Eam1105I	GACNNNNNGTC	1 cut(s)	2569
EarI	CTCTTC	6 cut(s)	609, 1385, 1706, 2225, 2539, 2706
EciI	GGCGGA	2 cut(s)	2363, 2431
Ecl136II	GAGCTC	3 cut(s)	1312, 2078, 2383
Eco130I	CCWWGG	3 cut(s)	1236, 1667, 3055
Eco24I	GRGCYC	3 cut(s)	1314, 2080, 2385
Eco32I	GATATC	2 cut(s)	948, 1996
Eco47I	GGWCC	1 cut(s)	3125
Eco47III	AGCGCT	1 cut(s)	3315
Eco53kI	GAGCTC	3 cut(s)	1312, 2078, 2383
Eco57I	CTGAAG	3 cut(s)	680, 1139, 2385
Eco88I	CYCGRG	2 cut(s)	495, 2384
Eco91I	GGTNACC	1 cut(s)	3059
EcoICRI	GAGCTC	3 cut(s)	1312, 2078, 2383
EcoO65I	GGTNACC	1 cut(s)	3059
EcoRII	CCWGG	4 cut(s)	1124, 1411, 1471, 3360
EcoRV	GATATC	2 cut(s)	948, 1996
EcoT14I	CCWWGG	3 cut(s)	1236, 1667, 3055
EcoT38I	GRGCYC	3 cut(s)	1314, 2080, 2385
ErhI	CCWWGG	3 cut(s)	1236, 1667, 3055
Esp3I	CGTCTC	1 cut(s)	505
FaqI	GGGAC	1 cut(s)	1307
FbaI	TGATCA	5 cut(s)	1399, 1888, 2203, 2260, 3508
FriOI	GRGCYC	3 cut(s)	1314, 2080, 2385
FspBI	CTAG	6 cut(s)	1653, 1823, 2217, 2508, 2666, 3012
GlaI	GCGC	3 cut(s)	789, 3243, 3315
GsaI	CCCAGC	2 cut(s)	387, 1548
GsuI	CTGGAG	3 cut(s)	689, 803, 2885
HaeII	RGCGCY	1 cut(s)	3317
HaeIII	GGCC	4 cut(s)	1629, 1796, 2225, 3054
HapII	CCGG	2 cut(s)	2731, 3183
HgaI	GACGC	2 cut(s)	2660, 3366
HhaI	GCGC	3 cut(s)	790, 3244, 3316
Hin1I	GRCGYC	2 cut(s)	514, 3358
Hin6I	GCGC	3 cut(s)	788, 3242, 3314
HinP1I	GCGC	3 cut(s)	788, 3242, 3314
HindIII	AAGCTT	4 cut(s)	743, 846, 1151, 2330
HinfI	GANTC	8 cut(s)	455, 1016, 1057, 1918, 2194, 2269, 2981, 3196
HpaII	CCGG	2 cut(s)	2731, 3183
HphI	GGTGA	7 cut(s)	1669, 1684, 2483, 2942, 3053, 3085, 3472
Hpy166II	GTNNAC	4 cut(s)	675, 1534, 1737, 2848
Hpy8I	GTNNAC	4 cut(s)	675, 1534, 1737, 2848
Hpy99I	CGWCG	1 cut(s)	3360
HpyCH4III	ACNGT	6 cut(s)	1508, 1553, 1771, 2567, 2835, 3235
HpyCH4IV	ACGT	5 cut(s)	514, 1536, 1637, 2768, 2890
HpySE526I	ACGT	5 cut(s)	514, 1536, 1637, 2768, 2890
Hsp92I	GRCGYC	2 cut(s)	514, 3358
HspAI	GCGC	3 cut(s)	788, 3242, 3314
Ksp22I	TGATCA	5 cut(s)	1399, 1888, 2203, 2260, 3508
LguI	GCTCTTC	1 cut(s)	1385
LmnI	GCTCC	4 cut(s)	401, 1669, 2781, 3286
MabI	ACCWGGT	1 cut(s)	1124
MaeI	CTAG	6 cut(s)	1653, 1823, 2217, 2508, 2666, 3012
MaeII	ACGT	5 cut(s)	514, 1536, 1637, 2768, 2890
MaeIII	GTNAC	8 cut(s)	149, 173, 1633, 1657, 1672, 2044, 3059, 3442
MfeI	CAATTG	2 cut(s)	82, 303
MhlI	GDGCHC	6 cut(s)	213, 494, 1314, 2080, 2249, 2385
MlsI	TGGCCA	3 cut(s)	1796, 2225, 3054
MluNI	TGGCCA	3 cut(s)	1796, 2225, 3054
MlyI	GAGTC	3 cut(s)	2188, 2263, 3190
MmeI	TCCRAC	4 cut(s)	1951, 3322, 3379, 3427
Mox20I	TGGCCA	3 cut(s)	1796, 2225, 3054
MroXI	GAANNNNTTC	2 cut(s)	122, 2548
MscI	TGGCCA	3 cut(s)	1796, 2225, 3054
MslI	CAYNNNNRTG	4 cut(s)	201, 497, 1982, 3111
Msp20I	TGGCCA	3 cut(s)	1796, 2225, 3054
MspA1I	CMGCKG	1 cut(s)	3214
MspCI	CTTAAG	3 cut(s)	476, 2105, 2408
MspI	CCGG	2 cut(s)	2731, 3183
MspR9I	CCNGG	6 cut(s)	1126, 1413, 1473, 2732, 3184, 3362
MunI	CAATTG	2 cut(s)	82, 303
Mva1269I	GAATGC	1 cut(s)	2128
MvaI	CCWGG	4 cut(s)	1126, 1413, 1473, 3362
NciI	CCSGG	2 cut(s)	2732, 3184
NcoI	CCATGG	2 cut(s)	1236, 3055
NlaIV	GGNNCC	5 cut(s)	212, 1607, 1665, 1701, 3321
NmuCI	GTSAC	5 cut(s)	149, 173, 1657, 1672, 3059
NspI	RCATGY	1 cut(s)	2343
OliI	CACNNNNGTG	1 cut(s)	497
PaeR7I	CTCGAG	2 cut(s)	495, 2384
PagI	TCATGA	1 cut(s)	1065
PaqCI	CACCTGC	1 cut(s)	2918
PciSI	GCTCTTC	1 cut(s)	1385
PctI	GAATGC	1 cut(s)	2128
PdmI	GAANNNNTTC	2 cut(s)	122, 2548
PfeI	GAWTC	5 cut(s)	455, 1016, 1057, 1918, 2981
PflFI	GACNNNGTC	1 cut(s)	3199
PfoI	TCCNGGA	1 cut(s)	2730
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	2188, 2263, 3190
PpsI	GAGTC	3 cut(s)	2188, 2263, 3190
PsiI	TTATAA	3 cut(s)	20, 1281, 3389
Psp124BI	GAGCTC	3 cut(s)	1314, 2080, 2385
Psp6I	CCWGG	4 cut(s)	1124, 1411, 1471, 3360
PspEI	GGTNACC	1 cut(s)	3059
PspFI	CCCAGC	2 cut(s)	383, 1544
PspGI	CCWGG	4 cut(s)	1124, 1411, 1471, 3360
PspN4I	GGNNCC	5 cut(s)	212, 1607, 1665, 1701, 3321
PspPI	GGNCC	1 cut(s)	3125
PspXI	VCTCGAGB	1 cut(s)	495
PstI	CTGCAG	3 cut(s)	1002, 1457, 1531
PstNI	CAGNNNCTG	2 cut(s)	2497, 2677
PsyI	GACNNNGTC	1 cut(s)	3199
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	3214
RseI	CAYNNNNRTG	4 cut(s)	201, 497, 1982, 3111
SacI	GAGCTC	3 cut(s)	1314, 2080, 2385
SapI	GCTCTTC	1 cut(s)	1385
Sau96I	GGNCC	1 cut(s)	3125
ScaI	AGTACT	2 cut(s)	584, 2717
SchI	GAGTC	3 cut(s)	2188, 2263, 3190
ScrFI	CCNGG	6 cut(s)	1126, 1413, 1473, 2732, 3184, 3362
SduI	GDGCHC	6 cut(s)	213, 494, 1314, 2080, 2249, 2385
SexAI	ACCWGGT	1 cut(s)	1124
SfcI	CTRYAG	5 cut(s)	40, 935, 998, 1453, 1527
Sfr274I	CTCGAG	2 cut(s)	495, 2384
SinI	GGWCC	1 cut(s)	3125
SlaI	CTCGAG	2 cut(s)	495, 2384
SmiMI	CAYNNNNRTG	4 cut(s)	201, 497, 1982, 3111
SsiI	CCGC	4 cut(s)	289, 2348, 2416, 2450
SspMI	CTAG	6 cut(s)	1653, 1823, 2217, 2508, 2666, 3012
SstI	GAGCTC	3 cut(s)	1314, 2080, 2385
StyD4I	CCNGG	6 cut(s)	1124, 1411, 1471, 2730, 3182, 3360
StyI	CCWWGG	3 cut(s)	1236, 1667, 3055
TaaI	ACNGT	6 cut(s)	1508, 1553, 1771, 2567, 2835, 3235
TaiI	ACGT	5 cut(s)	517, 1539, 1640, 2771, 2893
TaqI	TCGA	9 cut(s)	246, 496, 736, 758, 1780, 2385, 3022, 3297, 3482
TatI	WGTACW	8 cut(s)	142, 582, 672, 768, 798, 1734, 2715, 3327
TfiI	GAWTC	5 cut(s)	455, 1016, 1057, 1918, 2981
TscAI	CASTG	6 cut(s)	450, 550, 1536, 1623, 1744, 2254
TseFI	GTSAC	5 cut(s)	149, 173, 1657, 1672, 3059
Tsp45I	GTSAC	5 cut(s)	149, 173, 1657, 1672, 3059
TspRI	CASTG	6 cut(s)	450, 550, 1536, 1623, 1744, 2254
Tth111I	GACNNNGTC	1 cut(s)	3199
Vha464I	CTTAAG	3 cut(s)	476, 2105, 2408
VpaK11BI	GGWCC	1 cut(s)	3125
XapI	RAATTY	6 cut(s)	367, 1008, 1435, 1687, 1721, 2875
XbaI	TCTAGA	1 cut(s)	1822
XceI	RCATGY	1 cut(s)	2343
XhoI	CTCGAG	2 cut(s)	495, 2384
XmnI	GAANNNNTTC	2 cut(s)	122, 2548
XspI	CTAG	6 cut(s)	1653, 1823, 2217, 2508, 2666, 3012
ZraI	GACGTC	1 cut(s)	515
ZrmI	AGTACT	2 cut(s)	584, 2717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.