Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

8363710 .. 8364748

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1073000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCAATCACCATTTATAGTACACATATCCCTGATGAAACTCACACTACCGCTGCACTGCTATAAGGTACTCTCAGGTGTACCGAATTGTTTATGCGCGAGAATGTGGTGGGGAGCTGGGGCAATTGGGGCCCATGATGAAACGAAACAGAAAAATCTCGACATTCTGAAACGATTTCACTCTGAAGAAGAAACTAATGACATGGATGATGATGATGCCGGTATGTTTTTATTTTATTGTTTGTTTTTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

5.68

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	21, 69, 81
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	129
ApaI	GGGCCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	129, 130
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	39
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	129, 130
BmiI	GGNNCC	2 cut(s)	130, 131
BmsI	GCATC	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	218
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	219
BsnI	GGCC	1 cut(s)	131
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	130, 131
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	129, 130
Csp6I	GTAC	3 cut(s)	20, 68, 80
CviAII	CATG	2 cut(s)	134, 202
CviJI	RGCY	2 cut(s)	116, 131
CviKI_1	RGCY	2 cut(s)	116, 131
CviQI	GTAC	3 cut(s)	20, 68, 80
DdeI	CTNAG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	2 cut(s)	137, 205
FaiI	YATR	7 cut(s)	17, 26, 63, 94, 135, 203, 224
FatI	CATG	2 cut(s)	133, 201
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	53
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	137, 205
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	22, 80
Hpy188I	TCNGA	3 cut(s)	168, 184, 251
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	22, 80
HpyCH4V	TGCA	2 cut(s)	4, 55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	137, 205
HspAI	GCGC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	4 cut(s)	44, 60, 102, 232
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	197, 200
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	85, 123
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	137, 205
NlaIV	GGNNCC	2 cut(s)	130, 131
PkrI	GCNGC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	130, 131
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	129, 130
RsaI	GTAC	3 cut(s)	21, 69, 81
RsaNI	GTAC	3 cut(s)	20, 68, 80
SatI	GCNGC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	129, 130
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	69, 79, 118
SfaNI	GCATC	1 cut(s)	205
SgeI	CNNG	9 cut(s)	43, 87, 109, 111, 129, 146, 170, 214, 231
Sse9I	AATT	2 cut(s)	85, 123
SsiI	CCGC	1 cut(s)	50
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	85, 123
TatI	WGTACW	1 cut(s)	19
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	50, 153
TspRI	CASTG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.