Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000049.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

8560 .. 10242

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggaagcaaaaggtataatggattgtgtaatggagattacaaaggagacatggttgctcatcgaggaagggaagacatatgttgttcatggaacgccagaagtgcggctcttcctgtccataccgcaagagggcatcacgaaagatgaattgcagaaaaagtttgatgcattggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagaaactagtgaccagaaaggattgtttagattctgctttcgtgaaattttggttaatggttttggtgatgatggacatacgaaaaaggtttcactctgaagatgaagctgatggcatggatgaggatgtggatggaggtgaagttagttttgatgatctatctgcagaagagaagaaactattccaaagagctgttgcttctggagaactgagcaagatgattaagccttgggatccttggtggttgaagccttctgccaggacaatatccttcagcaaagaaggaacccaacttatccaaccgcttgccaaagaggacgaaccaagcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

187

Amino Acids

21.38

Weight (kDa)

5.14

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	106, 125, 533
AclWI	GGATC	2 cut(s)	458, 471
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	348, 487
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	181, 478
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	195, 488
AluBI	AGCT	3 cut(s)	188, 338, 422
AluI	AGCT	3 cut(s)	188, 338, 422
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	458, 471
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	307, 380
BamHI	GGATCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	295, 335, 356
BciT130I	CCWGG	2 cut(s)	197, 490
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	107, 201
BlsI	GCNGC	2 cut(s)	108, 202
Bme1390I	CCNGG	2 cut(s)	197, 490
BmiI	GGNNCC	2 cut(s)	465, 517
BmrFI	CCNGG	2 cut(s)	197, 490
BmsI	GCATC	2 cut(s)	144, 157
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	195, 458, 467
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	197, 490
BseDI	CCNNGG	3 cut(s)	195, 458, 467
BseGI	GGATG	3 cut(s)	355, 361, 367
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	385, 463
BspACI	CCGC	3 cut(s)	106, 125, 533
BspCNI	CTCAG	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	465, 517
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	458, 471
BspQI	GCTCTTC	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	195, 458, 467
BssMI	GATC	2 cut(s)	385, 463
BssT1I	CCWWGG	2 cut(s)	458, 467
Bst2UI	CCWGG	2 cut(s)	197, 490
Bst6I	CTCTTC	2 cut(s)	116, 393
BstC8I	GCNNGC	2 cut(s)	190, 537
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	3 cut(s)	355, 361, 367
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	388, 466
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	2 cut(s)	385, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 200
BstNI	CCWGG	2 cut(s)	197, 490
BstSCI	CCNGG	2 cut(s)	195, 488
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	355, 361, 367
Cac8I	GCNNGC	2 cut(s)	190, 537
CfoI	GCGC	1 cut(s)	194
CviAII	CATG	3 cut(s)	51, 89, 346
CviJI	RGCY	7 cut(s)	109, 188, 200, 338, 422, 457, 481
CviKI_1	RGCY	7 cut(s)	109, 188, 200, 338, 422, 457, 481
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	2 cut(s)	387, 465
DpnII	GATC	2 cut(s)	385, 463
Eam1104I	CTCTTC	2 cut(s)	116, 393
EarI	CTCTTC	2 cut(s)	116, 393
Eco130I	CCWWGG	2 cut(s)	458, 467
Eco57I	CTGAAG	2 cut(s)	348, 487
EcoRII	CCWGG	2 cut(s)	195, 488
EcoT14I	CCWWGG	2 cut(s)	458, 467
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	458, 467
FaeI	CATG	3 cut(s)	54, 92, 349
FaiI	YATR	8 cut(s)	17, 52, 79, 81, 90, 122, 308, 347
FatI	CATG	3 cut(s)	50, 88, 345
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	107, 201
FokI	GGATG	3 cut(s)	362, 368, 374
Fsp4HI	GCNGC	2 cut(s)	107, 201
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	107, 201
GsuI	CTGGAG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	54, 92, 349
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	2 cut(s)	307, 380
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	139, 271, 432
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	4 cut(s)	62, 492, 506, 511
HpyCH4V	TGCA	4 cut(s)	154, 170, 203, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 200
HpyF3I	CTNAG	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	54, 92, 349
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	385, 463
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	8 cut(s)	111, 128, 182, 209, 256, 417, 475, 502
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	144, 157
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	387, 465
MboI	GATC	2 cut(s)	385, 463
MboII	GAAGA	5 cut(s)	85, 103, 341, 410, 415
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	2 cut(s)	149, 275
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	58, 124, 346, 359, 538
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	2 cut(s)	284, 453
MspR9I	CCNGG	2 cut(s)	197, 490
MvaI	CCWGG	2 cut(s)	197, 490
MwoI	GCNNNNNNNGC	2 cut(s)	103, 200
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	385, 463
NlaIII	CATG	3 cut(s)	54, 92, 349
NlaIV	GGNNCC	2 cut(s)	465, 517
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	108, 202
Psp6I	CCWGG	2 cut(s)	195, 488
PspGI	CCWGG	2 cut(s)	195, 488
PspN4I	GGNNCC	2 cut(s)	465, 517
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	284, 453
SatI	GCNGC	2 cut(s)	107, 201
Sau3AI	GATC	2 cut(s)	385, 463
ScrFI	CCNGG	2 cut(s)	197, 490
SetI	ASST	6 cut(s)	16, 190, 320, 340, 370, 424
SfaNI	GCATC	2 cut(s)	144, 157
SfcI	CTRYAG	1 cut(s)	393
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	2 cut(s)	149, 275
SsiI	CCGC	3 cut(s)	106, 125, 533
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	195, 488
StyI	CCWWGG	2 cut(s)	458, 467
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	149, 275
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	284, 453
Tru9I	TTAA	2 cut(s)	284, 453
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	77, 162, 348
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.