Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000419.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

124673 .. 129673

Gene Structure 5001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000419.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtgtgactacatctcccatcatggcattagagccatggaaattggtgtgtgtggtgtcatggccactaggagaggcaatcatggcgtcatgctcatggttggtgccattgatggagttatcatatggacttgggcagccctatggcaccccaagaaggctgcagcgccagaagctgcaattgttgctgtcttgctaagtccaggaatcaattttcgattcttgcttcttctcactctgaagaatggatgtccgtgtgaagtctttagtacacggagcatcatatcacgaccaggatgccctagtcgccctcccactcgctctcgccgtctccgtcacactcgcccgagtactcgccctcccagtcgcccacgcgctctcacagaccaagctaaactcaatcacgacgacatcgccaatgctattaagagtctcaccgggtttcaggtgtgccattcgcttggtggaggaaccggatctggtatggggactctgttgatttcgaaaatcagggaggaataccctgacagcttgggttggcgatttgaaccatttgatttttgctaccatgtctggtgtgacttgttgtttgagaaaaagtttgatgcatcggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagcaactagtgaccagaaagatccaacatgtggataatgacaaggtccagactttgcttctacggatacaagacgcaacaaaacaacaaatagcagcaacaaaacaacaaattaagggtaacaaaaggccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

266

Amino Acids

29.64

Weight (kDa)

9.87

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	104, 147
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccII	CGCG	1 cut(s)	375
AclWI	GGATC	2 cut(s)	484, 682
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	271, 352
AfiI	CCNNNNNNNGG	2 cut(s)	157, 697
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	548, 619
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	3 cut(s)	202, 292, 633
AluBI	AGCT	4 cut(s)	176, 392, 531, 626
AluI	AGCT	4 cut(s)	176, 392, 531, 626
Alw26I	GTCTC	2 cut(s)	335, 437
AlwI	GGATC	2 cut(s)	484, 682
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	2 cut(s)	63, 794
ApeKI	GCWGC	6 cut(s)	137, 161, 164, 176, 638, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AspLEI	GCGC	3 cut(s)	169, 377, 632
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	2 cut(s)	104, 147
BbvI	GCAGC	6 cut(s)	148, 149, 163, 176, 625, 773
BccI	CCATC	2 cut(s)	27, 107
BceAI	ACGGC	1 cut(s)	312
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	3 cut(s)	204, 294, 635
BciVI	GTATCC	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	335, 437
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	3 cut(s)	69, 303, 674
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	6 cut(s)	138, 162, 165, 177, 639, 762
BlsI	GCNGC	6 cut(s)	139, 163, 166, 178, 640, 763
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	4 cut(s)	204, 294, 439, 635
Bme18I	GGWCC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	3 cut(s)	106, 149, 472
BmrFI	CCNGG	4 cut(s)	204, 294, 439, 635
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	4 cut(s)	287, 288, 595, 617
BmuI	ACTGGG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	36, 633
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 697
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	204, 294, 635
BseDI	CCNNGG	2 cut(s)	36, 633
BseGI	GGATG	2 cut(s)	254, 302
BseLI	CCNNNNNNNGG	2 cut(s)	157, 697
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	6 cut(s)	148, 149, 163, 176, 625, 773
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	65, 796
BshNI	GGYRCC	2 cut(s)	104, 147
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	438, 474
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	157, 697
BsmAI	GTCTC	2 cut(s)	335, 437
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	65, 796
BsoBI	CYCGRG	1 cut(s)	346
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	476, 687
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	2 cut(s)	65, 796
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	106, 149, 472
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	484, 682
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	104, 147
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	36, 633
BssMI	GATC	2 cut(s)	476, 687
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	204, 294, 635
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	254, 302
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	169, 377, 632
BstKTI	GATC	2 cut(s)	479, 690
BstMAI	GTCTC	2 cut(s)	335, 437
BstMBI	GATC	2 cut(s)	476, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 173, 185, 306, 638
BstNI	CCWGG	3 cut(s)	204, 294, 635
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	4 cut(s)	202, 292, 437, 633
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	6 cut(s)	148, 149, 163, 176, 625, 773
BstX2I	RGATCY	2 cut(s)	476, 687
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	2 cut(s)	476, 687
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	65, 796
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	254, 302
Cac8I	GCNNGC	1 cut(s)	628
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	3 cut(s)	169, 377, 632
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	2 cut(s)	76, 749
Csp6I	GTAC	2 cut(s)	270, 351
CviAII	CATG	8 cut(s)	23, 37, 61, 83, 91, 97, 569, 695
CviQI	GTAC	2 cut(s)	270, 351
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	478, 689
DpnII	GATC	2 cut(s)	476, 687
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	346
EcoRII	CCWGG	3 cut(s)	202, 292, 633
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	8 cut(s)	26, 40, 64, 86, 94, 100, 572, 698
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	8 cut(s)	22, 36, 60, 82, 90, 96, 568, 694
FauNDI	CATATG	1 cut(s)	125
Fnu4HI	GCNGC	6 cut(s)	138, 162, 165, 177, 639, 762
FokI	GGATG	2 cut(s)	261, 309
Fsp4HI	GCNGC	6 cut(s)	138, 162, 165, 177, 639, 762
FspBI	CTAG	3 cut(s)	69, 303, 674
GlaI	GCGC	3 cut(s)	168, 376, 631
GluI	GCNGC	6 cut(s)	138, 162, 165, 177, 639, 762
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	65, 796
HapII	CCGG	2 cut(s)	438, 474
HgaI	GACGC	2 cut(s)	76, 749
HhaI	GCGC	3 cut(s)	169, 377, 632
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	8 cut(s)	26, 40, 64, 86, 94, 100, 572, 698
Hin6I	GCGC	3 cut(s)	167, 375, 630
HinP1I	GCGC	3 cut(s)	167, 375, 630
HinfI	GANTC	4 cut(s)	207, 219, 430, 490
HpaII	CCGG	2 cut(s)	438, 474
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	272, 658
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	3 cut(s)	288, 404, 715
Hpy8I	GTNNAC	2 cut(s)	272, 658
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	164, 179, 608, 641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 173, 185, 306, 638
HpyF3I	CTNAG	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	8 cut(s)	26, 40, 64, 86, 94, 100, 572, 698
HspAI	GCGC	3 cut(s)	167, 375, 630
Kzo9I	GATC	2 cut(s)	476, 687
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	6 cut(s)	148, 149, 163, 176, 625, 773
LweI	GCATC	4 cut(s)	287, 288, 595, 617
MaeI	CTAG	3 cut(s)	69, 303, 674
MaeIII	GTNAC	5 cut(s)	5, 335, 578, 676, 785
MalI	GATC	2 cut(s)	478, 689
MboI	GATC	2 cut(s)	476, 687
MboII	GAAGA	2 cut(s)	221, 253
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	476, 687
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	4 cut(s)	42, 180, 211, 777
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	439, 484
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	5 cut(s)	68, 321, 369, 461, 508
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	426, 780
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	438, 474
MspR9I	CCNGG	4 cut(s)	204, 294, 439, 635
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	3 cut(s)	204, 294, 635
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	5 cut(s)	84, 173, 185, 306, 638
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	125
NdeII	GATC	2 cut(s)	476, 687
NlaIII	CATG	8 cut(s)	26, 40, 64, 86, 94, 100, 572, 698
NlaIV	GGNNCC	3 cut(s)	106, 149, 472
NmuCI	GTSAC	4 cut(s)	5, 335, 578, 676
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	503
PciI	ACATGT	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	2 cut(s)	325, 331
PfeI	GAWTC	2 cut(s)	207, 219
PflFI	GACNNNGTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	139, 163, 166, 178, 640, 763
PleI	GAGTC	2 cut(s)	438, 484
PpsI	GAGTC	2 cut(s)	438, 484
PscI	ACATGT	1 cut(s)	694
Psp6I	CCWGG	3 cut(s)	202, 292, 633
PspGI	CCWGG	3 cut(s)	202, 292, 633
PspN4I	GGNNCC	3 cut(s)	106, 149, 472
PspPI	GGNCC	1 cut(s)	712
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	476, 687
PsyI	GACNNNGTC	1 cut(s)	710
RsaI	GTAC	2 cut(s)	271, 352
RsaNI	GTAC	2 cut(s)	270, 351
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	426, 780
SatI	GCNGC	6 cut(s)	138, 162, 165, 177, 639, 762
Sau3AI	GATC	2 cut(s)	476, 687
Sau96I	GGNCC	1 cut(s)	712
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	2 cut(s)	439, 484
ScrFI	CCNGG	4 cut(s)	204, 294, 439, 635
SetI	ASST	6 cut(s)	178, 394, 450, 533, 628, 714
SfaNI	GCATC	4 cut(s)	287, 288, 595, 617
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	673
Sse9I	AATT	4 cut(s)	42, 180, 211, 777
SspMI	CTAG	3 cut(s)	69, 303, 674
StyD4I	CCNGG	4 cut(s)	202, 292, 437, 633
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	2 cut(s)	217, 503
TasI	AATT	4 cut(s)	42, 180, 211, 777
TatI	WGTACW	2 cut(s)	269, 350
TfiI	GAWTC	2 cut(s)	207, 219
Tru1I	TTAA	2 cut(s)	426, 780
Tru9I	TTAA	2 cut(s)	426, 780
TseFI	GTSAC	4 cut(s)	5, 335, 578, 676
TseI	GCWGC	6 cut(s)	137, 161, 164, 176, 638, 761
Tsp45I	GTSAC	4 cut(s)	5, 335, 578, 676
TspGWI	ACGGA	4 cut(s)	243, 289, 323, 745
Tth111I	GACNNNGTC	1 cut(s)	710
Van91I	CCANNNNNTGG	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	712
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	3 cut(s)	69, 303, 674
ZrmI	AGTACT	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.