Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

15073769 .. 15074311

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAATGGCGGAGGATGTCGTCCTCGAATACCTACAGAACCACCACGAAATCGCAGACTCTCAACTCTTCGCAGCCCAAGCCAATATCAACCACGACGACATCGCTAATGCTATTAACAGTCTCACTGATCATGGATACGTTGACTCTCAGGAGATTATAGAGGAGACATGGTTGCTCACCGAGGCAGGAAAGACATATGCTGTTCATGGATCACCTGAAGTGCGTCTCTTCCTGGCCATACCACAAGAGGGTATCACAAAAGATGAATTGCAGAAAAAGTTCGATGCATCAGAATTCAAAATAGCTTGCGCCAAGGCTGCACAGAATAGATGGGTGGACTTCGGAAGGCAACTAGTGACCAGGAAGATCCAACTTGTGGATAATGACAAGGTCCAAACTTTGCTTCTACAGATACAAAACGCAGAGGAAAACATCAGCCAAGATGACATCAGGGCTCTCACCAAAAGAAAGCTTATTGTTCTACAAGTGAAGCAAGGCTTCTCAGTGAGAAGAGGTCCCAATTATGCTCTCCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

180

Amino Acids

20.4

Weight (kDa)

5.22

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD1	PF18552	6 - 58	5.6e-06	PheRS DNA binding domain 1
PheRS_DBD3	PF18553	72 - 124	4.5e-12	PheRS DNA binding domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	220, 364
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	251, 379
AgsI	TTSAA	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	234, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
AluBI	AGCT	2 cut(s)	308, 475
AluI	AGCT	2 cut(s)	308, 475
Alw26I	GTCTC	3 cut(s)	128, 161, 233
AlwI	GGATC	2 cut(s)	220, 364
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	74, 320
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	394, 518
AsuHPI	GGTGA	3 cut(s)	172, 207, 454
AvaII	GGWCC	2 cut(s)	394, 518
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	86, 307
BccI	CCATC	1 cut(s)	327
BciT130I	CCWGG	2 cut(s)	236, 364
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	128, 161, 233
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	35, 410
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	75, 321
BlsI	GCNGC	2 cut(s)	76, 322
Bme1390I	CCNGG	2 cut(s)	236, 364
Bme18I	GGWCC	2 cut(s)	394, 518
BmgT120I	GGNCC	2 cut(s)	394, 518
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	2 cut(s)	236, 364
BmsI	GCATC	2 cut(s)	277, 299
BsaJI	CCNNGG	2 cut(s)	183, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 379
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	236, 364
BseDI	CCNNGG	2 cut(s)	183, 315
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	251, 379
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	164, 519
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	86, 307
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	251, 379
BsmAI	GTCTC	3 cut(s)	128, 161, 233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	130, 212, 369
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	163, 518
BspLI	GGNNCC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	220, 364
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	183, 315
BssMI	GATC	3 cut(s)	130, 212, 369
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	236, 364
Bst4CI	ACNGT	2 cut(s)	122, 540
Bst6I	CTCTTC	3 cut(s)	74, 236, 508
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	150, 505
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	3 cut(s)	133, 215, 372
BstMAI	GTCTC	3 cut(s)	128, 161, 233
BstMBI	GATC	3 cut(s)	130, 212, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 320
BstNI	CCWGG	2 cut(s)	236, 364
BstSCI	CCNGG	2 cut(s)	234, 362
BstSFI	CTRYAG	2 cut(s)	35, 410
BstV1I	GCAGC	2 cut(s)	86, 307
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	126, 513
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	394, 518
CseI	GACGC	1 cut(s)	215
CviAII	CATG	3 cut(s)	134, 171, 209
CviJI	RGCY	9 cut(s)	77, 83, 239, 308, 320, 441, 458, 475, 501
CviKI_1	RGCY	9 cut(s)	77, 83, 239, 308, 320, 441, 458, 475, 501
DdeI	CTNAG	2 cut(s)	150, 505
DpnI	GATC	3 cut(s)	132, 214, 371
DpnII	GATC	3 cut(s)	130, 212, 369
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	74, 236, 508
EarI	CTCTTC	3 cut(s)	74, 236, 508
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	394, 518
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	234, 362
EcoT14I	CCWWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	137, 174, 212
FaiI	YATR	8 cut(s)	135, 161, 172, 199, 201, 210, 242, 528
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	3 cut(s)	133, 170, 208
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	75, 321
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	75, 321
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	2 cut(s)	75, 321
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	137, 174, 212
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	59, 146
HphI	GGTGA	3 cut(s)	172, 207, 454
Hpy166II	GTNNAC	2 cut(s)	145, 340
Hpy188I	TCNGA	2 cut(s)	295, 347
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	145, 340
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	2 cut(s)	122, 540
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	274, 290, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 320
HpyF3I	CTNAG	2 cut(s)	150, 505
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	137, 174, 212
HspAI	GCGC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 212, 369
LpnPI	CCDG	8 cut(s)	137, 174, 221, 231, 248, 349, 376, 439
Lsp1109I	GCAGC	2 cut(s)	86, 307
LweI	GCATC	2 cut(s)	277, 299
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	132, 214, 371
MboI	GATC	3 cut(s)	130, 212, 369
MboII	GAAGA	4 cut(s)	61, 223, 379, 525
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	269, 296, 523
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	53, 140
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	7 cut(s)	7, 35, 157, 178, 244, 421, 509
Mox20I	TGGCCA	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	236, 364
MvaI	CCWGG	2 cut(s)	236, 364
MwoI	GCNNNNNNNGC	2 cut(s)	80, 320
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	3 cut(s)	130, 212, 369
NlaIII	CATG	3 cut(s)	137, 174, 212
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	76, 322
PleI	GAGTC	2 cut(s)	53, 140
PpsI	GAGTC	2 cut(s)	53, 140
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	234, 362
PspGI	CCWGG	2 cut(s)	234, 362
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	394, 518
PspPPI	RGGWCCY	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	75, 321
Sau3AI	GATC	3 cut(s)	130, 212, 369
Sau96I	GGNCC	2 cut(s)	394, 518
SchI	GAGTC	2 cut(s)	53, 140
ScrFI	CCNGG	2 cut(s)	236, 364
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	7 cut(s)	36, 144, 220, 310, 396, 477, 520
SfaNI	GCATC	2 cut(s)	277, 299
SfcI	CTRYAG	2 cut(s)	35, 410
SinI	GGWCC	2 cut(s)	394, 518
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	3 cut(s)	269, 296, 523
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	234, 362
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	122, 540
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	27, 285
TasI	AATT	3 cut(s)	269, 296, 523
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	133, 513
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	74, 320
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	197, 282
TspRI	CASTG	2 cut(s)	133, 513
Tth111I	GACNNNGTC	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	394, 518
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.