Rmu_sc0000441.1_g000126

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
Physical Location & Seq
Reverse (-)
455200 .. 458467
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000441.1_g000126.1.cds

Sequence Viewer

Length: 1215 bp
atgaaaacgccgctgccgtcacagtcaccaacccggtccagccctcccactcactctcgccgtctccgtcacacttgcccgagtactcgccctcccagtcgacccctcgatgtttcccaagtcctccttattaacatcttctcctattcgccaatctcaacaagaccaaactcctctactccaatttggcctctgaatttctcaatcaagaaaacacacagaacccagaaatggcgacccttccatccacctattgctaccgtacttactcctcctcatcatcggcgtcgtattcttccgtacacaaaagcctccagagggtggccgtttctccgagtccgcaatgtttcgtctccgccaaggtttctctgcagtctcaatccgttttgcagcaaaatgttgtcagcatgcaagatgctacgtctgggtatgtggaggaaagtaaagaacgggttgctgtcagctacgtctgggtctgtggaggaaagtaaagacgcaagtgggtttagttttgaagaatctgagtctactgtgagtattactgtggttggagcatctggggaccttgcaaagaagaagatattcccggctcttttcgcactttattatgagggttgcctccctaaacactttactatttgtggttatgctcggagtaagatgactagtgcagagcttagaaccatggttagcaagacgcttacttgcagaattgaccagagggagaactgtggcgaaaagatggaccaatttcttgaaagatgtttctactactctggtcagtatgattcacaggatcactttgcacagctggacaagaaactaaaggaacatgagaacaatgccctcgagcagctcatggagttcacatctcatctctacaaatttcttgagcctcatgagacatggttgctcaccgaggaagggaagacatatgctgttcatggaacgccagaagtacggctcttcctgtccataccgcaagagggcatcacgaaagatgaattgcagaaaaagtttgatgcattggttttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagaaactagtgaccagaaaggtaacctcttactcagaaatctcactgcacattagtatttccagggactctatgcacaagaggcgcgccactggtggcaagaagaaagcttggaggaagaagcgaaagtaa

Protein Analysis

404

Amino Acids

46.3

Weight (kDa)

9.97

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AccI GTMKAC 2 cut(s) 100, 527
AccII CGCG 1 cut(s) 1170
AciI CCGC 4 cut(s) 11, 340, 356, 980
AclWI GGATC 1 cut(s) 804
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 2 cut(s) 196, 884
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 4 cut(s) 85, 264, 302, 960
AfiI CCNNNNNNNGG 5 cut(s) 231, 318, 321, 924, 986
AgsI TTSAA 3 cut(s) 515, 758, 1036
AhlI ACTAGT 2 cut(s) 665, 1090
AjnI CCWGG 2 cut(s) 1050, 1145
AluBI AGCT 6 cut(s) 464, 676, 811, 856, 1043, 1193
AluI AGCT 6 cut(s) 464, 676, 811, 856, 1043, 1193
Alw26I GTCTC 4 cut(s) 68, 357, 380, 896
AlwI GGATC 1 cut(s) 804
Ama87I CYCGRG 2 cut(s) 79, 848
AoxI GGCC 2 cut(s) 188, 323
ApeKI GCWGC 4 cut(s) 13, 390, 853, 1055
ApoI RAATTY 2 cut(s) 196, 884
AscI GGCGCGCC 1 cut(s) 1168
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 3 cut(s) 1049, 1170, 1172
AspS9I GGNCC 3 cut(s) 36, 562, 745
AsuC2I CCSGG 2 cut(s) 34, 587
AsuHPI GGTGA 2 cut(s) 18, 907
AvaI CYCGRG 2 cut(s) 79, 848
AvaII GGWCC 3 cut(s) 36, 562, 745
BbsI GAAGAC 1 cut(s) 935
BbvI GCAGC 3 cut(s) 402, 865, 1042
BccI CCATC 2 cut(s) 252, 736
BceAI ACGGC 3 cut(s) 45, 310, 977
BciT130I CCWGG 2 cut(s) 1052, 1147
BcnI CCSGG 2 cut(s) 34, 587
BcoDI GTCTC 4 cut(s) 68, 357, 380, 896
BcuI ACTAGT 2 cut(s) 665, 1090
BfaI CTAG 2 cut(s) 666, 1091
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 5 cut(s) 11, 14, 391, 854, 1056
BlsI GCNGC 5 cut(s) 12, 15, 392, 855, 1057
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 4 cut(s) 34, 587, 1052, 1147
Bme18I GGWCC 3 cut(s) 36, 562, 745
BmeT110I CYCGRG 2 cut(s) 79, 848
BmgT120I GGNCC 3 cut(s) 36, 562, 745
BmiI GGNNCC 1 cut(s) 563
BmrFI CCNGG 4 cut(s) 34, 587, 1052, 1147
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 4 cut(s) 405, 563, 999, 1012
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 2 cut(s) 34, 587
BsaHI GRCGYC 1 cut(s) 286
BsaJI CCNNGG 5 cut(s) 359, 684, 918, 1050, 1146
BsaXI ACNNNNNCTCC 4 cut(s) 76, 106, 125, 155
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 318, 321, 924, 986
Bse1I ACTGG 2 cut(s) 96, 1180
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 2 cut(s) 1052, 1147
BseDI CCNNGG 5 cut(s) 359, 684, 918, 1050, 1146
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 5 cut(s) 231, 318, 321, 924, 986
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 513, 1131
BseNI ACTGG 2 cut(s) 96, 1180
BsePI GCGCGC 1 cut(s) 1168
BseRI GAGGAG 3 cut(s) 163, 261, 264
BseXI GCAGC 3 cut(s) 402, 865, 1042
BsgI GTGCAG 2 cut(s) 690, 1115
Bsh1236I CGCG 1 cut(s) 1170
BshFI GGCC 2 cut(s) 190, 325
BsiHKCI CYCGRG 2 cut(s) 79, 848
BsiSI CCGG 2 cut(s) 34, 587
BslFI GGGAC 2 cut(s) 575, 1163
BslI CCNNNNNNNGG 5 cut(s) 231, 318, 321, 924, 986
BsmAI GTCTC 4 cut(s) 68, 357, 380, 896
BsmBI CGTCTC 2 cut(s) 68, 357
BsmFI GGGAC 2 cut(s) 575, 1163
BsnI GGCC 2 cut(s) 190, 325
BsoBI CYCGRG 2 cut(s) 79, 848
Bsp143I GATC 1 cut(s) 796
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 4 cut(s) 11, 340, 356, 980
BspANI GGCC 2 cut(s) 190, 325
BspCNI CTCAG 2 cut(s) 514, 1130
BspFNI CGCG 1 cut(s) 1170
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 563
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 1 cut(s) 804
BspQI GCTCTTC 1 cut(s) 971
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 2 cut(s) 96, 1180
BssECI CCNNGG 5 cut(s) 359, 684, 918, 1050, 1146
BssHII GCGCGC 1 cut(s) 1168
BssMI GATC 1 cut(s) 796
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 2 cut(s) 359, 684
Bst2UI CCWGG 2 cut(s) 1052, 1147
Bst4CI ACNGT 5 cut(s) 24, 262, 532, 544, 731
Bst6I CTCTTC 1 cut(s) 971
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 409, 1045, 1170
BstDEI CTNAG 3 cut(s) 522, 677, 1117
BstDSI CCRYGG 1 cut(s) 684
BstEII GGTNACC 1 cut(s) 1105
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 1170
BstHHI GCGC 3 cut(s) 1049, 1170, 1172
BstKTI GATC 1 cut(s) 799
BstMAI GTCTC 4 cut(s) 68, 357, 380, 896
BstMBI GATC 1 cut(s) 796
BstMWI GCNNNNNNNGC 3 cut(s) 596, 1055, 1165
BstNI CCWGG 2 cut(s) 1052, 1147
BstNSI RCATGY 1 cut(s) 411
BstPI GGTNACC 1 cut(s) 1105
BstSCI CCNGG 4 cut(s) 32, 585, 1050, 1145
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 1 cut(s) 1170
BstV1I GCAGC 3 cut(s) 402, 865, 1042
BstV2I GAAGAC 1 cut(s) 935
BsuRI GGCC 2 cut(s) 190, 325
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 1127
BtsIMutI CAGTG 2 cut(s) 1127, 1173
Cac8I GCNNGC 3 cut(s) 409, 1045, 1170
CciI TCATGA 1 cut(s) 898
CfoI GCGC 3 cut(s) 1049, 1170, 1172
Cfr13I GGNCC 3 cut(s) 36, 562, 745
CseI GACGC 3 cut(s) 275, 503, 706
Csp6I GTAC 4 cut(s) 84, 263, 301, 959
CviAII CATG 7 cut(s) 408, 685, 833, 859, 899, 906, 944
CviQI GTAC 4 cut(s) 84, 263, 301, 959
DdeI CTNAG 3 cut(s) 522, 677, 1117
DpnI GATC 1 cut(s) 798
DpnII GATC 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 971
EarI CTCTTC 1 cut(s) 971
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 359, 684
Eco47I GGWCC 3 cut(s) 36, 562, 745
Eco88I CYCGRG 2 cut(s) 79, 848
Eco91I GGTNACC 1 cut(s) 1105
EcoO109I RGGNCCY 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 1105
EcoRII CCWGG 2 cut(s) 1050, 1145
EcoT14I CCWWGG 2 cut(s) 359, 684
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 2 cut(s) 359, 684
Esp3I CGTCTC 2 cut(s) 68, 357
FaeI CATG 7 cut(s) 411, 688, 836, 862, 902, 909, 947
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 2 cut(s) 575, 1163
FatI CATG 7 cut(s) 407, 684, 832, 858, 898, 905, 943
FauNDI CATATG 1 cut(s) 934
FblI GTMKAC 2 cut(s) 100, 527
Fnu4HI GCNGC 5 cut(s) 11, 14, 391, 854, 1056
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 11, 14, 391, 854, 1056
FspBI CTAG 2 cut(s) 666, 1091
GlaI GCGC 3 cut(s) 1048, 1169, 1171
GluI GCNGC 5 cut(s) 11, 14, 391, 854, 1056
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 2 cut(s) 190, 325
HapII CCGG 2 cut(s) 34, 587
HgaI GACGC 3 cut(s) 275, 503, 706
HhaI GCGC 3 cut(s) 1049, 1170, 1172
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 7 cut(s) 411, 688, 836, 862, 902, 909, 947
Hin6I GCGC 3 cut(s) 1047, 1168, 1170
HinP1I GCGC 3 cut(s) 1047, 1168, 1170
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 1191
HinfI GANTC 5 cut(s) 336, 518, 524, 788, 1151
HpaII CCGG 2 cut(s) 34, 587
HphI GGTGA 2 cut(s) 18, 907
Hpy166II GTNNAC 5 cut(s) 101, 303, 528, 867, 1075
Hpy188I TCNGA 5 cut(s) 195, 335, 523, 654, 1120
Hpy188III TCNNGA 6 cut(s) 208, 315, 755, 890, 899, 994
Hpy8I GTNNAC 5 cut(s) 101, 303, 528, 867, 1075
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 250, 917
HpyCH4III ACNGT 5 cut(s) 24, 262, 532, 544, 731
HpyCH4IV ACGT 2 cut(s) 421, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 1055, 1165
HpyF3I CTNAG 3 cut(s) 522, 677, 1117
HpySE526I ACGT 2 cut(s) 421, 467
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 7 cut(s) 411, 688, 836, 862, 902, 909, 947
HspAI GCGC 3 cut(s) 1047, 1168, 1170
Kzo9I GATC 1 cut(s) 796
LguI GCTCTTC 1 cut(s) 971
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 3 cut(s) 402, 865, 1042
LweI GCATC 4 cut(s) 405, 563, 999, 1012
MaeI CTAG 2 cut(s) 666, 1091
MaeII ACGT 2 cut(s) 421, 467
MaeIII GTNAC 5 cut(s) 18, 24, 68, 1093, 1105
MalI GATC 1 cut(s) 798
MboI GATC 1 cut(s) 796
MboII GAAGA 9 cut(s) 130, 287, 527, 586, 589, 940, 958, 1198, 1213
MluCI AATT 6 cut(s) 183, 196, 711, 749, 884, 1004
MlyI GAGTC 3 cut(s) 345, 533, 1145
MmeI TCCRAC 1 cut(s) 529
Mph1103I ATGCAT 1 cut(s) 1027
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 2 cut(s) 13, 811
MspI CCGG 2 cut(s) 34, 587
MspR9I CCNGG 4 cut(s) 34, 587, 1052, 1147
MvaI CCWGG 2 cut(s) 1052, 1147
MvnI CGCG 1 cut(s) 1170
MwoI GCNNNNNNNGC 3 cut(s) 596, 1055, 1165
NciI CCSGG 2 cut(s) 34, 587
NcoI CCATGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 934
NdeII GATC 1 cut(s) 796
NlaIII CATG 7 cut(s) 411, 688, 836, 862, 902, 909, 947
NlaIV GGNNCC 1 cut(s) 563
NmuCI GTSAC 4 cut(s) 18, 24, 68, 1093
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 1 cut(s) 411
PaeI GCATGC 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 848
PagI TCATGA 1 cut(s) 898
PalAI GGCGCGCC 1 cut(s) 1168
PauI GCGCGC 1 cut(s) 1168
PciSI GCTCTTC 1 cut(s) 971
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 64
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 518, 788
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 5 cut(s) 12, 15, 392, 855, 1057
PleI GAGTC 3 cut(s) 344, 532, 1145
PpsI GAGTC 3 cut(s) 344, 532, 1145
PpuMI RGGWCCY 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 1050, 1145
PspEI GGTNACC 1 cut(s) 1105
PspGI CCWGG 2 cut(s) 1050, 1145
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 3 cut(s) 36, 562, 745
PspPPI RGGWCCY 1 cut(s) 562
PspXI VCTCGAGB 1 cut(s) 848
PstI CTGCAG 1 cut(s) 374
PteI GCGCGC 1 cut(s) 1168
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 4 cut(s) 85, 264, 302, 960
RsaNI GTAC 4 cut(s) 84, 263, 301, 959
SalI GTCGAC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 971
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 5 cut(s) 11, 14, 391, 854, 1056
Sau3AI GATC 1 cut(s) 796
Sau96I GGNCC 3 cut(s) 36, 562, 745
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 3 cut(s) 345, 533, 1145
ScrFI CCNGG 4 cut(s) 34, 587, 1052, 1147
SfaNI GCATC 4 cut(s) 405, 563, 999, 1012
SfcI CTRYAG 1 cut(s) 370
Sfr274I CTCGAG 1 cut(s) 848
SgsI GGCGCGCC 1 cut(s) 1168
SinI GGWCC 3 cut(s) 36, 562, 745
SlaI CTCGAG 1 cut(s) 848
SmlI CTYRAG 2 cut(s) 848, 890
SmoI CTYRAG 2 cut(s) 848, 890
SpeI ACTAGT 2 cut(s) 665, 1090
SphI GCATGC 1 cut(s) 411
Sse9I AATT 6 cut(s) 183, 196, 711, 749, 884, 1004
SsiI CCGC 4 cut(s) 11, 340, 356, 980
SspMI CTAG 2 cut(s) 666, 1091
StyD4I CCNGG 4 cut(s) 32, 585, 1050, 1145
StyI CCWWGG 2 cut(s) 359, 684
TaaI ACNGT 5 cut(s) 24, 262, 532, 544, 731
TaiI ACGT 2 cut(s) 424, 470
TaqI TCGA 3 cut(s) 100, 108, 849
TasI AATT 6 cut(s) 183, 196, 711, 749, 884, 1004
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 518, 788
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 1134, 1180
TseFI GTSAC 4 cut(s) 18, 24, 68, 1093
TseI GCWGC 4 cut(s) 13, 390, 853, 1055
Tsp45I GTSAC 4 cut(s) 18, 24, 68, 1093
TspDTI ATGAA 3 cut(s) 17, 932, 1017
TspGWI ACGGA 3 cut(s) 56, 288, 372
TspRI CASTG 2 cut(s) 1134, 1180
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 3 cut(s) 36, 562, 745
XapI RAATTY 2 cut(s) 196, 884
XceI RCATGY 1 cut(s) 411
XhoI CTCGAG 1 cut(s) 848
XmiI GTMKAC 2 cut(s) 100, 527
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 2 cut(s) 666, 1091
ZrmI AGTACT 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.