Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011434.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

3757 .. 7582

Gene Structure 3826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011434.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggaagccgaagctcaagaatcgagcccccaaaacgacgccgtcatcacttccttctgcgagatcacctccgcctccaaacaagaagccctattcttcctcgaattccacaattacgacctcgacgccgccgtttccactttcttggacaacgaaaacaccgccgctgacgacgccgccgccgccgctgactatgccgccaacccggagattacaaaggagacatggttgctcatcgaggaagggaagacatatgttgttcatggaacgccagaaaaaattggattcctgaccaagatcttgtcttatttttcagctgattctgcactgtctgaggagactattaaaaaagtgttgtctggaggtgaagttagttttgatgatctatctgcagaagagaagaaactattccaaagagctgttgcttctggagaactgagcaagatgattaagccttgggatccttggtggttgaagccttctgccaggacaatatccttcagcaaagaaggaacccaacttatccaaccgcttgccaaagaggacgaaccaatgtcaccagaagaggatcaagaaagcagtcaagcaagtgagattccaccaggtcctgagacaccactgcctcccctcagcaagcttagttccgcgaagccatcaccattcttagctgttcaaatagtgtccactgatttgaattgggcacccgaatgtgccgagcttcataatgggccccggaatttgaaatgggctttgtgtcgccctttgtttactggtcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

259

Amino Acids

28.44

Weight (kDa)

4.49

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	700
AccII	CGCG	1 cut(s)	647
AclWI	GGATC	3 cut(s)	455, 468, 576
AcsI	RAATTY	2 cut(s)	104, 736
AcuI	CTGAAG	1 cut(s)	484
AcyI	GRCGYC	3 cut(s)	39, 126, 174
AgsI	TTSAA	4 cut(s)	475, 674, 694, 742
AjnI	CCWGG	2 cut(s)	485, 601
AluBI	AGCT	6 cut(s)	14, 317, 419, 637, 668, 718
AluI	AGCT	6 cut(s)	14, 317, 419, 637, 668, 718
Alw26I	GTCTC	3 cut(s)	215, 332, 605
AlwI	GGATC	3 cut(s)	455, 468, 576
AlwNI	CAGNNNCTG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	728
ApaI	GGGCCC	1 cut(s)	732
ApoI	RAATTY	2 cut(s)	104, 736
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	605, 728, 729
AsuC2I	CCSGG	2 cut(s)	206, 733
AsuHPI	GGTGA	4 cut(s)	58, 377, 549, 648
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	2 cut(s)	703, 732
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	2 cut(s)	29, 732
BbsI	GAAGAC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	629
BccI	CCATC	1 cut(s)	661
BceAI	ACGGC	2 cut(s)	26, 116
BciT130I	CCWGG	2 cut(s)	487, 603
BcnI	CCSGG	2 cut(s)	206, 733
BcoDI	GTCTC	3 cut(s)	215, 332, 605
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	7 cut(s)	129, 165, 177, 180, 183, 186, 198
BlsI	GCNGC	7 cut(s)	130, 166, 178, 181, 184, 187, 199
Bme1390I	CCNGG	4 cut(s)	206, 487, 603, 733
Bme18I	GGWCC	1 cut(s)	605
BmgT120I	GGNCC	3 cut(s)	605, 728, 729
BmiI	GGNNCC	5 cut(s)	462, 514, 702, 730, 731
BmrFI	CCNGG	4 cut(s)	206, 487, 603, 733
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	2 cut(s)	381, 450
Bpu10I	CCTNAGC	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	206, 733
BsaHI	GRCGYC	3 cut(s)	39, 126, 174
BsaJI	CCNNGG	3 cut(s)	455, 464, 731
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 354, 384
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	487, 603
BseDI	CCNNGG	3 cut(s)	455, 464, 731
BseMII	CTCAG	4 cut(s)	324, 428, 600, 643
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	2 cut(s)	703, 732
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	206, 733
BsmAI	GTCTC	3 cut(s)	215, 332, 605
BsnI	GGCC	1 cut(s)	730
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	3 cut(s)	29, 703, 732
Bsp143I	GATC	5 cut(s)	63, 297, 382, 460, 568
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	4 cut(s)	325, 429, 601, 642
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	5 cut(s)	462, 514, 702, 730, 731
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	3 cut(s)	455, 468, 576
BspT107I	GGYRCC	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	455, 464, 731
BssMI	GATC	5 cut(s)	63, 297, 382, 460, 568
BssNI	GRCGYC	3 cut(s)	39, 126, 174
BssT1I	CCWWGG	2 cut(s)	455, 464
Bst2UI	CCWGG	2 cut(s)	487, 603
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	390, 558
BstACI	GRCGYC	3 cut(s)	39, 126, 174
BstC8I	GCNNGC	2 cut(s)	534, 635
BstDEI	CTNAG	6 cut(s)	333, 437, 609, 629, 638, 664
BstFNI	CGCG	1 cut(s)	647
BstKTI	GATC	5 cut(s)	66, 300, 385, 463, 571
BstMAI	GTCTC	3 cut(s)	215, 332, 605
BstMBI	GATC	5 cut(s)	63, 297, 382, 460, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 182, 185, 194, 323
BstNI	CCWGG	2 cut(s)	487, 603
BstSCI	CCNGG	4 cut(s)	204, 485, 601, 731
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	2 cut(s)	703, 732
BstUI	CGCG	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	297, 460
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	297, 460
BsuRI	GGCC	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	3 cut(s)	326, 617, 684
Cac8I	GCNNGC	2 cut(s)	534, 635
CaiI	CAGNNNCTG	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	605, 728, 729
CseI	GACGC	3 cut(s)	47, 134, 182
CsiI	ACCWGGT	1 cut(s)	601
CviAII	CATG	2 cut(s)	225, 263
DdeI	CTNAG	6 cut(s)	333, 437, 609, 629, 638, 664
DpnI	GATC	5 cut(s)	65, 299, 384, 462, 570
DpnII	GATC	5 cut(s)	63, 297, 382, 460, 568
Eam1104I	CTCTTC	2 cut(s)	390, 558
EarI	CTCTTC	2 cut(s)	390, 558
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	455, 464
Eco24I	GRGCYC	2 cut(s)	29, 732
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	484
EcoO109I	RGGNCCY	2 cut(s)	605, 729
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	485, 601
EcoT14I	CCWWGG	2 cut(s)	455, 464
EcoT38I	GRGCYC	2 cut(s)	29, 732
ErhI	CCWWGG	2 cut(s)	455, 464
FaeI	CATG	2 cut(s)	228, 266
FaiI	YATR	6 cut(s)	195, 226, 253, 255, 264, 723
FatI	CATG	2 cut(s)	224, 262
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	129, 165, 177, 180, 183, 186, 198
FriOI	GRGCYC	2 cut(s)	29, 732
Fsp4HI	GCNGC	7 cut(s)	129, 165, 177, 180, 183, 186, 198
GluI	GCNGC	7 cut(s)	129, 165, 177, 180, 183, 186, 198
GsuI	CTGGAG	2 cut(s)	381, 450
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	2 cut(s)	206, 733
HgaI	GACGC	3 cut(s)	47, 134, 182
Hin1I	GRCGYC	3 cut(s)	39, 126, 174
Hin1II	CATG	2 cut(s)	228, 266
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	20, 285, 320, 595
HpaII	CCGG	2 cut(s)	206, 733
HphI	GGTGA	4 cut(s)	58, 377, 549, 648
Hpy166II	GTNNAC	2 cut(s)	684, 768
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	6 cut(s)	17, 289, 360, 429, 572, 608
Hpy8I	GTNNAC	2 cut(s)	684, 768
Hpy99I	CGWCG	3 cut(s)	41, 128, 176
HpyAV	CCTTC	5 cut(s)	64, 236, 489, 503, 508
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	326, 392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 182, 185, 194, 323
HpyF3I	CTNAG	6 cut(s)	333, 437, 609, 629, 638, 664
Hsp92I	GRCGYC	3 cut(s)	39, 126, 174
Hsp92II	CATG	2 cut(s)	228, 266
Kzo9I	GATC	5 cut(s)	63, 297, 382, 460, 568
MabI	ACCWGGT	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	5 cut(s)	65, 299, 384, 462, 570
MboI	GATC	5 cut(s)	63, 297, 382, 460, 568
MboII	GAAGA	5 cut(s)	88, 259, 407, 412, 575
MflI	RGATCY	2 cut(s)	297, 460
MhlI	GDGCHC	3 cut(s)	29, 703, 732
MluCI	AATT	5 cut(s)	104, 112, 279, 694, 736
MmeI	TCCRAC	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	2 cut(s)	345, 450
MslI	CAYNNNNRTG	1 cut(s)	706
MspA1I	CMGCKG	3 cut(s)	167, 188, 317
MspI	CCGG	2 cut(s)	206, 733
MspR9I	CCNGG	4 cut(s)	206, 487, 603, 733
MvaI	CCWGG	2 cut(s)	487, 603
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	5 cut(s)	173, 182, 185, 194, 323
NciI	CCSGG	2 cut(s)	206, 733
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	5 cut(s)	63, 297, 382, 460, 568
NlaIII	CATG	2 cut(s)	228, 266
NlaIV	GGNNCC	5 cut(s)	462, 514, 702, 730, 731
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	20, 285, 320, 595
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	7 cut(s)	130, 166, 178, 181, 184, 187, 199
PpuMI	RGGWCCY	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	485, 601
PspGI	CCWGG	2 cut(s)	485, 601
PspN4I	GGNNCC	5 cut(s)	462, 514, 702, 730, 731
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	3 cut(s)	605, 728, 729
PspPPI	RGGWCCY	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	297, 460
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	345, 450
SatI	GCNGC	7 cut(s)	129, 165, 177, 180, 183, 186, 198
Sau3AI	GATC	5 cut(s)	63, 297, 382, 460, 568
Sau96I	GGNCC	3 cut(s)	605, 728, 729
ScrFI	CCNGG	4 cut(s)	206, 487, 603, 733
SduI	GDGCHC	3 cut(s)	29, 703, 732
SexAI	ACCWGGT	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	5 cut(s)	104, 112, 279, 694, 736
StyD4I	CCNGG	4 cut(s)	204, 485, 601, 731
StyI	CCWWGG	2 cut(s)	455, 464
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	5 cut(s)	23, 102, 123, 237, 775
TasI	AATT	5 cut(s)	104, 112, 279, 694, 736
TauI	GCSGC	7 cut(s)	131, 167, 179, 182, 185, 188, 200
TfiI	GAWTC	4 cut(s)	20, 285, 320, 595
Tru1I	TTAA	2 cut(s)	345, 450
Tru9I	TTAA	2 cut(s)	345, 450
TscAI	CASTG	3 cut(s)	333, 624, 691
TseFI	GTSAC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	251, 710
TspRI	CASTG	3 cut(s)	333, 624, 691
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	2 cut(s)	104, 736
XmnI	GAANNNNTTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.