Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

14354255 .. 14354791

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGAGGATGTCGTCCTCGAATACCTACAGAACCACCACGAAATCGCAGACTCTCAACTCTTCGCAGCCCAAGCCAATATCAACCACGACGACATCGCTAATGCTATTAACAGTCTCACTGATCATGGATACGTTGACTCTCAGGAGATTATAGAGGAGACATGGTTGCTCACCGAGGCAGGAAAGACATATGCTGTTCATGGATCACCTGAAGTGCGTCTCTTCCTGGCCATACCACAAGAGGGTATCACAAAAGATGAATTGCAGAAAAAGTTCGATGCATCAGAATTCAAAATAGCTTGCGCCAAGGCTGCACAGAATAGATGGGTGGACTTCGGAAGGCAACTAGTGACCAGGAAGATCCAACTTGTGGATAATGACAAGGTCCAAACTTTGCTTCTACAGATACAAAACGCAGAGGAAAACATCAGCCAAGATGACATCAAGGCTCTCACCAAAAGAAAGCTTATTGTTCTACAAGTGAAGCAAGGCTTCTCAGTGAGAAGAGGTCCCAATTATGCTCTCCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

5.22

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD1	PF18552	4 - 56	5.5e-06	PheRS DNA binding domain 1
PheRS_DBD3	PF18553	70 - 122	4.4e-12	PheRS DNA binding domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	214, 358
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	245, 373
AgsI	TTSAA	1 cut(s)	295
AhlI	ACTAGT	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	228, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	302, 469
AluI	AGCT	2 cut(s)	302, 469
Alw26I	GTCTC	3 cut(s)	122, 155, 227
AlwI	GGATC	2 cut(s)	214, 358
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	68, 314
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	388, 512
AsuHPI	GGTGA	3 cut(s)	166, 201, 448
AvaII	GGWCC	2 cut(s)	388, 512
BalI	TGGCCA	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	80, 301
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	230, 358
BciVI	GTATCC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	3 cut(s)	122, 155, 227
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	29, 404
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	69, 315
BlsI	GCNGC	2 cut(s)	70, 316
Bme1390I	CCNGG	2 cut(s)	230, 358
Bme18I	GGWCC	2 cut(s)	388, 512
BmgT120I	GGNCC	2 cut(s)	388, 512
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	230, 358
BmsI	GCATC	2 cut(s)	271, 293
BsaJI	CCNNGG	2 cut(s)	177, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 373
BseBI	CCWGG	2 cut(s)	230, 358
BseDI	CCNNGG	2 cut(s)	177, 309
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	245, 373
BseMII	CTCAG	2 cut(s)	158, 513
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	80, 301
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	245, 373
BsmAI	GTCTC	3 cut(s)	122, 155, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	124, 206, 363
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	157, 512
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	2 cut(s)	214, 358
BssECI	CCNNGG	2 cut(s)	177, 309
BssMI	GATC	3 cut(s)	124, 206, 363
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	230, 358
Bst4CI	ACNGT	2 cut(s)	116, 534
Bst6I	CTCTTC	3 cut(s)	68, 230, 502
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	144, 499
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	3 cut(s)	127, 209, 366
BstMAI	GTCTC	3 cut(s)	122, 155, 227
BstMBI	GATC	3 cut(s)	124, 206, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 314
BstNI	CCWGG	2 cut(s)	230, 358
BstSCI	CCNGG	2 cut(s)	228, 356
BstSFI	CTRYAG	2 cut(s)	29, 404
BstV1I	GCAGC	2 cut(s)	80, 301
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	120, 507
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	388, 512
CseI	GACGC	1 cut(s)	209
CviAII	CATG	3 cut(s)	128, 165, 203
CviJI	RGCY	9 cut(s)	71, 77, 233, 302, 314, 435, 452, 469, 495
CviKI_1	RGCY	9 cut(s)	71, 77, 233, 302, 314, 435, 452, 469, 495
DdeI	CTNAG	2 cut(s)	144, 499
DpnI	GATC	3 cut(s)	126, 208, 365
DpnII	GATC	3 cut(s)	124, 206, 363
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	3 cut(s)	68, 230, 502
EarI	CTCTTC	3 cut(s)	68, 230, 502
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	388, 512
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	228, 356
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	131, 168, 206
FaiI	YATR	8 cut(s)	129, 155, 166, 193, 195, 204, 236, 522
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	3 cut(s)	127, 164, 202
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	69, 315
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	69, 315
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	69, 315
HaeIII	GGCC	1 cut(s)	233
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	131, 168, 206
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	53, 140
HphI	GGTGA	3 cut(s)	166, 201, 448
Hpy166II	GTNNAC	2 cut(s)	139, 334
Hpy188I	TCNGA	2 cut(s)	289, 341
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	139, 334
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	116, 534
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	268, 284, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 314
HpyF3I	CTNAG	2 cut(s)	144, 499
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	131, 168, 206
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 206, 363
LpnPI	CCDG	7 cut(s)	131, 168, 215, 225, 242, 343, 370
Lsp1109I	GCAGC	2 cut(s)	80, 301
LweI	GCATC	2 cut(s)	271, 293
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	3 cut(s)	126, 208, 365
MboI	GATC	3 cut(s)	124, 206, 363
MboII	GAAGA	4 cut(s)	55, 217, 373, 519
MflI	RGATCY	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	3 cut(s)	263, 290, 517
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	47, 134
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	6 cut(s)	29, 151, 172, 238, 415, 503
Mox20I	TGGCCA	1 cut(s)	233
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	230, 358
MvaI	CCWGG	2 cut(s)	230, 358
MwoI	GCNNNNNNNGC	2 cut(s)	74, 314
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	124, 206, 363
NlaIII	CATG	3 cut(s)	131, 168, 206
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	70, 316
PleI	GAGTC	2 cut(s)	47, 134
PpsI	GAGTC	2 cut(s)	47, 134
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	228, 356
PspGI	CCWGG	2 cut(s)	228, 356
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	2 cut(s)	388, 512
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	363
PsyI	GACNNNGTC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	69, 315
Sau3AI	GATC	3 cut(s)	124, 206, 363
Sau96I	GGNCC	2 cut(s)	388, 512
SchI	GAGTC	2 cut(s)	47, 134
ScrFI	CCNGG	2 cut(s)	230, 358
SetI	ASST	7 cut(s)	30, 138, 214, 304, 390, 471, 514
SfaNI	GCATC	2 cut(s)	271, 293
SfcI	CTRYAG	2 cut(s)	29, 404
SinI	GGWCC	2 cut(s)	388, 512
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	3 cut(s)	263, 290, 517
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	228, 356
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	116, 534
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	21, 279
TasI	AATT	3 cut(s)	263, 290, 517
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	127, 507
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	68, 314
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	191, 276
TspRI	CASTG	2 cut(s)	127, 507
Tth111I	GACNNNGTC	1 cut(s)	386
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	388, 512
XapI	RAATTY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.