Rh7AG082500

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005532
Physical Location & Seq
Forward (+)
5924851 .. 5927855
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG082500.1

Sequence Viewer

Length: 606 bp
ATGGGAGAGGAGGAGGTCGGAGGAGGCCGGAGGAGGTGGGATGAGGCCGGAGCAATGGGAGAGTGGAGGAGGCCGGAGCAATGCGAGAGGAGGAGGTCGGAGGAGAGGGATAAATGCTTGATTGATACGGAAATCCCAATAGATTCCGGCCATGGCGGACTCATAATCACCTCTGAGAAACCCTCCACCTCGTCCCCTCTCGACCCTCCTTCCCGCATCGTCTGCCACGTTTGCCAGAAGCAGTTTTCACAGTACACGTGTCCTCGATGCAACTCACCCTACTGTTCTCTTCACTGCTACAAGTCACATAATATTCGATGTACGGAGTCGTTTATGCGAGATAATGTGGTTGGGAAGCTAGGGCAGTTGGGGCCGAATGACGAAACGAAGCAGAAGATGATGGACGTACTGAAAAGGTTTCACTCTGAAGAAGAAGCTCATGGCATGGATGAGGATGTGGATGCTGATTCTGCACTGTCTGAAGAGACTATCCAAAAAGTGCTGGCTGGAGGTGAAGTTAGTTTTGATGATCTATCTGCCGAAGAAAAGAAACTATTCCGAAGAGCTGTTGCTTCTGGAGAACTGAGCAAGATGATTAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

201

Amino Acids

22.64

Weight (kDa)

5.36

Isoelectric Point (pI)

72.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 72 - 101 8.4e-11 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 156, 214
AcoI YGGCCR 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 447, 501
AcvI CACGTG 1 cut(s) 258
AfaI GTAC 3 cut(s) 254, 322, 408
AflIII ACRYGT 2 cut(s) 255, 257
AluBI AGCT 3 cut(s) 358, 437, 566
AluI AGCT 3 cut(s) 358, 437, 566
Alw26I GTCTC 1 cut(s) 479
AoxI GGCC 5 cut(s) 25, 45, 71, 148, 371
Asp700I GAANNNNTTC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 160, 267, 524
BbrPI CACGTG 1 cut(s) 258
BccI CCATC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 3 cut(s) 225, 257, 451
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 2 cut(s) 528, 597
BsaAI YACGTR 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bse3DI GCAATG 2 cut(s) 60, 86
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 4 cut(s) 46, 454, 460, 466
BseMI GCAATG 2 cut(s) 60, 86
BseMII CTCAG 2 cut(s) 165, 575
BseRI GAGGAG 8 cut(s) 23, 26, 36, 46, 82, 103, 106, 116
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 5 cut(s) 27, 47, 73, 150, 373
BsiSI CCGG 4 cut(s) 28, 48, 74, 147
BslFI GGGAC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 5 cut(s) 27, 47, 73, 150, 373
Bsp143I GATC 1 cut(s) 529
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 2 cut(s) 156, 214
BspANI GGCC 5 cut(s) 27, 47, 73, 150, 373
BspCNI CTCAG 2 cut(s) 166, 576
BspLI GGNNCC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 556
BsrDI GCAATG 2 cut(s) 60, 86
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 252, 284, 477
Bst6I CTCTTC 3 cut(s) 294, 477, 556
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 2 cut(s) 174, 584
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 4 cut(s) 46, 454, 460, 466
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 4 cut(s) 222, 231, 370, 470
BsuRI GGCC 5 cut(s) 27, 47, 73, 150, 373
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 4 cut(s) 46, 454, 460, 466
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 292, 473
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 3 cut(s) 253, 321, 407
CviAII CATG 3 cut(s) 152, 440, 445
CviJI RGCY 9 cut(s) 27, 47, 73, 150, 358, 373, 437, 506, 566
CviKI_1 RGCY 9 cut(s) 27, 47, 73, 150, 358, 373, 437, 506, 566
CviQI GTAC 3 cut(s) 253, 321, 407
DdeI CTNAG 2 cut(s) 174, 584
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 3 cut(s) 294, 477, 556
EarI CTCTTC 3 cut(s) 294, 477, 556
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 447, 501
Eco72I CACGTG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 155, 443, 448
FaiI YATR 6 cut(s) 153, 164, 309, 335, 441, 446
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 151, 439, 444
FauI CCCGC 1 cut(s) 221
FokI GGATG 4 cut(s) 53, 461, 467, 473
FspBI CTAG 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 528, 597
HaeIII GGCC 5 cut(s) 27, 47, 73, 150, 373
HapII CCGG 4 cut(s) 28, 48, 74, 147
Hin1II CATG 3 cut(s) 155, 443, 448
HinfI GANTC 4 cut(s) 143, 159, 326, 467
HpaII CCGG 4 cut(s) 28, 48, 74, 147
HphI GGTGA 3 cut(s) 160, 267, 524
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 6 cut(s) 20, 100, 175, 427, 481, 560
Hpy188III TCNNGA 2 cut(s) 200, 576
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 3 cut(s) 252, 284, 477
HpyCH4IV ACGT 3 cut(s) 228, 257, 405
HpyCH4V TGCA 2 cut(s) 270, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 231, 370, 470
HpyF3I CTNAG 2 cut(s) 174, 584
HpySE526I ACGT 3 cut(s) 228, 257, 405
Hsp92II CATG 3 cut(s) 155, 443, 448
Kzo9I GATC 1 cut(s) 529
LguI GCTCTTC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 50, 76
LpnPI CCDG 8 cut(s) 41, 61, 87, 160, 248, 488, 492, 561
LweI GCATC 3 cut(s) 225, 257, 451
MaeI CTAG 1 cut(s) 359
MaeII ACGT 3 cut(s) 228, 257, 405
MaeIII GTNAC 1 cut(s) 303
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 7 cut(s) 281, 406, 440, 443, 494, 554, 573
MlyI GAGTC 2 cut(s) 153, 335
MmeI TCCRAC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 2 cut(s) 597, 604
MspI CCGG 4 cut(s) 28, 48, 74, 147
MwoI GCNNNNNNNGC 4 cut(s) 222, 231, 370, 470
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 529
NlaIII CATG 3 cut(s) 155, 443, 448
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 2 cut(s) 143, 467
PleI GAGTC 2 cut(s) 153, 334
PmaCI CACGTG 1 cut(s) 258
PmlI CACGTG 1 cut(s) 258
PpsI GAGTC 2 cut(s) 153, 334
Ppu21I YACGTR 1 cut(s) 258
PspCI CACGTG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 371
RsaI GTAC 3 cut(s) 254, 322, 408
RsaNI GTAC 3 cut(s) 253, 321, 407
SapI GCTCTTC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 597, 604
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 2 cut(s) 153, 335
SfaNI GCATC 3 cut(s) 225, 257, 451
SsiI CCGC 2 cut(s) 156, 214
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 252, 284, 477
TaiI ACGT 3 cut(s) 231, 260, 408
TaqI TCGA 3 cut(s) 201, 265, 316
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 143, 467
Tru1I TTAA 2 cut(s) 597, 604
Tru9I TTAA 2 cut(s) 597, 604
TscAI CASTG 2 cut(s) 299, 480
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspGWI ACGGA 2 cut(s) 143, 338
TspRI CASTG 2 cut(s) 299, 480
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.