Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

80301010 .. 80306807

Gene Structure 5798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGTCTTAAAGTGGGAGTTGAATCGTCAGAGGTGGACACGTTCCCTGGGCAACTCAACTCGACCTCGAAAGTTGGCTGTCAATCTCATTCCATTCCCCGTCTCCACTTTTTCATTCCATTCCTGGTGGGATGTTTTAATGCAGAAAAAGTTTGATGCATCGGTTTTCAAAATATATTGCGCCCAGGCTGCAAAGAATAAATGGGTGGACTTTGGAAAGCAACCGGTGACCAGAAAGATCCAACATGTGGATAATGACAAGGTCCAGACTTTGCTTCTACGGATACAGGACGCAAGAAAACAACAAATAGCAGCAACAAAACAACAAATTAAGGGGCCTGGAGGCGTTGGTGGAGCCAGTACGCCAATAAATGGGCAGCTGTATTTAGCTTTGTTGAATTTTGGCTTGTGGTTTGTAGCCGGCTTGTGGTTAAAAGTTAATAATCAACTAAATGGAAAGCTGCCATCGGGGAAATTCAAGGCATCGATGGATACCTTGTATGGAACTGTACGAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

10.45

Isoelectric Point (pI)

20.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	250, 374
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	400, 476
AfaI	GTAC	2 cut(s)	364, 513
AfiI	CCNNNNNNNGG	3 cut(s)	250, 374, 429
AflIII	ACRYGT	2 cut(s)	41, 247
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	25, 172, 400, 481
AjnI	CCWGG	4 cut(s)	48, 125, 186, 340
AluBI	AGCT	3 cut(s)	382, 392, 463
AluI	AGCT	3 cut(s)	382, 392, 463
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	191, 314, 379, 463
ApoI	RAATTY	2 cut(s)	400, 476
AsiGI	ACCGGT	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	265, 338
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	178, 326, 391, 450
BccI	CCATC	2 cut(s)	475, 484
BciT130I	CCWGG	4 cut(s)	50, 127, 188, 342
BciVI	GTATCC	2 cut(s)	279, 487
BcoDI	GTCTC	1 cut(s)	109
BfuI	GTATCC	2 cut(s)	279, 487
BisI	GCNGC	4 cut(s)	192, 315, 380, 464
BlsI	GCNGC	4 cut(s)	193, 316, 381, 465
Bme1390I	CCNGG	4 cut(s)	50, 127, 188, 342
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	265, 338
BmiI	GGNNCC	2 cut(s)	339, 358
BmrFI	CCNGG	4 cut(s)	50, 127, 188, 342
BmsI	GCATC	3 cut(s)	148, 170, 494
BpmI	CTGGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	48, 49, 186
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 374, 429
Bse118I	RCCGGY	2 cut(s)	226, 422
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	4 cut(s)	50, 127, 188, 342
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	48, 49, 186
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	250, 374, 429
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	4 cut(s)	178, 326, 391, 450
BshFI	GGCC	1 cut(s)	340
BshTI	ACCGGT	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	227, 423
BslI	CCNNNNNNNGG	3 cut(s)	250, 374, 429
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	339, 358
BspPI	GGATC	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	226, 422
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	2 cut(s)	226, 422
BssECI	CCNNGG	3 cut(s)	48, 49, 186
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	4 cut(s)	50, 127, 188, 342
Bst4CI	ACNGT	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	424
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	4 cut(s)	50, 127, 188, 342
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	48, 125, 186, 340
BstV1I	GCAGC	4 cut(s)	178, 326, 391, 450
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	488
BsuI	GTATCC	2 cut(s)	279, 487
BsuRI	GGCC	1 cut(s)	340
BsuTUI	ATCGAT	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	2 cut(s)	226, 422
Cfr13I	GGNCC	2 cut(s)	265, 338
ClaI	ATCGAT	1 cut(s)	488
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	363, 512
CspAI	ACCGGT	1 cut(s)	226
CviAII	CATG	1 cut(s)	248
CviQI	GTAC	2 cut(s)	363, 512
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	4 cut(s)	48, 125, 186, 340
EcoT22I	ATGCAT	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	178, 249, 504
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	192, 315, 380, 464
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	192, 315, 380, 464
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	4 cut(s)	192, 315, 380, 464
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	2 cut(s)	227, 423
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	2 cut(s)	227, 423
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	39, 211
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	2 cut(s)	39, 211
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	145, 161, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	4 cut(s)	178, 326, 391, 450
LweI	GCATC	3 cut(s)	148, 170, 494
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	4 cut(s)	330, 400, 476, 520
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	27, 78, 338, 509
Mph1103I	ATGCAT	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	422
MseI	TTAA	5 cut(s)	11, 140, 333, 434, 441
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	227, 423
MspR9I	CCNGG	4 cut(s)	50, 127, 188, 342
MvaI	CCWGG	4 cut(s)	50, 127, 188, 342
MwoI	GCNNNNNNNGC	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	424
NdeII	GATC	1 cut(s)	240
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	339, 358
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	251
PasI	CCCWGGG	1 cut(s)	49
PciI	ACATGT	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	2 cut(s)	250, 374
PinAI	ACCGGT	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	193, 316, 381, 465
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	4 cut(s)	48, 125, 186, 340
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	4 cut(s)	48, 125, 186, 340
PspN4I	GGNNCC	2 cut(s)	339, 358
PspPI	GGNCC	2 cut(s)	265, 338
PsuI	RGATCY	1 cut(s)	240
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	364, 513
RsaNI	GTAC	2 cut(s)	363, 512
SaqAI	TTAA	5 cut(s)	11, 140, 333, 434, 441
SatI	GCNGC	4 cut(s)	192, 315, 380, 464
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	265, 338
ScrFI	CCNGG	4 cut(s)	50, 127, 188, 342
SetI	ASST	9 cut(s)	9, 38, 46, 70, 267, 384, 394, 465, 500
SfaNI	GCATC	3 cut(s)	148, 170, 494
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	330, 400, 476, 520
StyD4I	CCNGG	4 cut(s)	48, 125, 186, 340
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	64, 70, 488
TasI	AATT	4 cut(s)	330, 400, 476, 520
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	5 cut(s)	11, 140, 333, 434, 441
Tru9I	TTAA	5 cut(s)	11, 140, 333, 434, 441
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	191, 314, 379, 463
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	2 cut(s)	250, 374
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	400, 476
XceI	RCATGY	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.