Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002876.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

10322 .. 11176

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002876.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggaagccgaagctcaagaatcgagcccccaaaacgacgccatcaatacctccttctgcgagatcacctccgcctccaaacaagaagccctcttcttcctcgaattccacaattacgaccttgaagccctcttgtaccctcccactcgctctctccgtctccgtcacactcgcccgagtactcgccctcccagtcgcccacgcgctctcccagacgaagctaaactcaaccacgacgacatcgccaatgctattaagagtctcaccggtcacagatacgttgactctcagggtttggttgtttgtattgtagggtttcaggtgtgccattcgcttggtggaggaaccggatctggtatggggactctgttgatttcgaaaatcagggaggaataccctgacagcttggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006996 GO:0006997 GO:0006998 GO:0007030 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010256 GO:0010498 GO:0010921 GO:0016043 GO:0016236 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019941 GO:0022607 GO:0030163 GO:0030234 GO:0031323 GO:0031399 GO:0031468 GO:0032182 GO:0032268 GO:0035303 GO:0035304 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043666 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051117 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051603 GO:0060255 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

SEP UBA_4 UBX

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

5.68

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	137, 181
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	3 cut(s)	14, 221, 405
AluI	AGCT	3 cut(s)	14, 221, 405
Alw26I	GTCTC	2 cut(s)	164, 266
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	104
AsiGI	ACCGGT	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	58, 256
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	29
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	164, 266
BmcAI	AGTACT	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu14I	TTCGAA	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	2 cut(s)	266, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 192, 202, 222
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	204
BshTI	ACCGGT	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	267, 348
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	164, 266
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	63, 350
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	266
BssMI	GATC	2 cut(s)	63, 350
BssNI	GRCGYC	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	66, 353
BstMAI	GTCTC	2 cut(s)	164, 266
BstMBI	GATC	2 cut(s)	63, 350
BstUI	CGCG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	266
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	136, 180
CspAI	ACCGGT	1 cut(s)	266
CviJI	RGCY	7 cut(s)	8, 14, 27, 89, 128, 221, 405
CviKI_1	RGCY	7 cut(s)	8, 14, 27, 89, 128, 221, 405
CviQI	GTAC	2 cut(s)	136, 180
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	65, 352
DpnII	GATC	2 cut(s)	63, 350
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	1 cut(s)	359
FaqI	GGGAC	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	29
GlaI	GCGC	1 cut(s)	205
HapII	CCGG	2 cut(s)	267, 348
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	20, 259, 284, 364
HpaII	CCGG	2 cut(s)	267, 348
HphI	GGTGA	2 cut(s)	58, 256
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	41, 239
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	63, 350
LpnPI	CCDG	8 cut(s)	205, 225, 275, 280, 305, 339, 361, 370
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	164, 269
MalI	GATC	2 cut(s)	65, 352
MboI	GATC	2 cut(s)	63, 350
MboII	GAAGA	2 cut(s)	85, 88
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	104, 112
MlyI	GAGTC	3 cut(s)	268, 278, 358
MseI	TTAA	1 cut(s)	255
MspI	CCGG	2 cut(s)	267, 348
MvnI	CGCG	1 cut(s)	204
NdeII	GATC	2 cut(s)	63, 350
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	164, 269
NspV	TTCGAA	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	266
PleI	GAGTC	3 cut(s)	267, 278, 358
PpsI	GAGTC	3 cut(s)	267, 278, 358
PspN4I	GGNNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	2 cut(s)	137, 181
RsaNI	GTAC	2 cut(s)	136, 180
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	63, 350
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	3 cut(s)	268, 278, 358
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	16, 53, 71, 123, 223, 282, 324, 407
SfuI	TTCGAA	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	104, 112
SsiI	CCGC	1 cut(s)	72
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	23, 102, 377
TasI	AATT	2 cut(s)	104, 112
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	2 cut(s)	164, 269
Tsp45I	GTSAC	2 cut(s)	164, 269
TspGWI	ACGGA	2 cut(s)	146, 152
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.