Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002312.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1699

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002312.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 583 bp

atggaagccgaagctcaagaatcgagcccccaaaacgacgccgtcatcacctccttctgcgagatcacctccgcctccaaacaagaagccctattcttcctcgaattccacaattacgacctcgacgccgccgtttccactttcttggacaacgaaaacaccgccgctgacgacgccgccgccgccgctgactatgccgccaacccggagattacaaaggagacatggttgctcatcgaggaagggaagacatatgttgttcatggaacgccagaagtgcggctcttcctgtccataccgcaagagggcatcacgaaagatgaattgcagaaaaagtttgatgcatcggttttcaaaatagcttgcgcccagactgcaaagaataaatgggtggactttggaaagcaactagtgaccagaaagtctcataatattcgatgcaccgagtcgtttatgcgagataatgtggttggggagctagggcaattgggcccgaatgaccaaacgaagcagaagatgatggacatactgaaaaggtttcactctgaagatgaagctgatggcatggatgaggatgtggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

4.5

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	3 cut(s)	39, 126, 174
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	355
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	4 cut(s)	14, 362, 478, 557
AluI	AGCT	4 cut(s)	14, 362, 478, 557
Alw26I	GTCTC	2 cut(s)	215, 429
AoxI	GGCC	1 cut(s)	490
ApaI	GGGCCC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	490, 491
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	40, 58
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	29, 494
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	2 cut(s)	514, 554
BceAI	ACGGC	2 cut(s)	26, 116
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	215, 429
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	2 cut(s)	410, 479
BisI	GCNGC	8 cut(s)	129, 165, 177, 180, 183, 186, 198, 281
BlsI	GCNGC	8 cut(s)	130, 166, 178, 181, 184, 187, 199, 282
Bme1390I	CCNGG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	490, 491
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	4 cut(s)	318, 331, 353, 428
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	3 cut(s)	39, 126, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	574, 580
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	494
BshFI	GGCC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	215, 429
BsnI	GGCC	1 cut(s)	492
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	29, 494
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	290
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	3 cut(s)	39, 126, 174
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	3 cut(s)	39, 126, 174
BstC8I	GCNNGC	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	574, 580
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	2 cut(s)	215, 429
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 185, 194, 277, 374
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	574, 580
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	490, 491
CseI	GACGC	3 cut(s)	47, 134, 182
CviAII	CATG	3 cut(s)	225, 263, 565
CviJI	RGCY	9 cut(s)	8, 14, 27, 89, 283, 362, 478, 492, 557
CviKI_1	RGCY	9 cut(s)	8, 14, 27, 89, 283, 362, 478, 492, 557
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	29, 494
Eco57I	CTGAAG	1 cut(s)	567
EcoRI	GAATTC	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	29, 494
FaeI	CATG	3 cut(s)	228, 266, 568
FatI	CATG	3 cut(s)	224, 262, 564
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	8 cut(s)	129, 165, 177, 180, 183, 186, 198, 281
FriOI	GRGCYC	2 cut(s)	29, 494
Fsp4HI	GCNGC	8 cut(s)	129, 165, 177, 180, 183, 186, 198, 281
FspBI	CTAG	2 cut(s)	410, 479
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	8 cut(s)	129, 165, 177, 180, 183, 186, 198, 281
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	3 cut(s)	47, 134, 182
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	3 cut(s)	39, 126, 174
Hin1II	CATG	3 cut(s)	228, 266, 568
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	20, 446
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	40, 58
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	2 cut(s)	17, 313
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	3 cut(s)	41, 128, 176
HpyAV	CCTTC	2 cut(s)	64, 236
HpyCH4V	TGCA	4 cut(s)	328, 344, 377, 441
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 185, 194, 277, 374
Hsp92I	GRCGYC	3 cut(s)	39, 126, 174
Hsp92II	CATG	3 cut(s)	228, 266, 568
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	475
LpnPI	CCDG	5 cut(s)	219, 285, 302, 383, 430
LweI	GCATC	4 cut(s)	318, 331, 353, 428
MaeI	CTAG	2 cut(s)	410, 479
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	5 cut(s)	88, 259, 277, 526, 560
MfeI	CAATTG	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	29, 494
MluCI	AATT	4 cut(s)	104, 112, 323, 485
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	8 cut(s)	61, 79, 85, 110, 131, 232, 298, 565
Mph1103I	ATGCAT	1 cut(s)	346
MspA1I	CMGCKG	2 cut(s)	167, 188
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	485
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 185, 194, 277, 374
NciI	CCSGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	228, 266, 568
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	8 cut(s)	130, 166, 178, 181, 184, 187, 199, 282
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	492
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	490, 491
PsyI	GACNNNGTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	8 cut(s)	129, 165, 177, 180, 183, 186, 198, 281
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	2 cut(s)	490, 491
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	29, 494
SetI	ASST	8 cut(s)	16, 53, 71, 123, 364, 480, 539, 559
SfaNI	GCATC	4 cut(s)	318, 331, 353, 428
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	4 cut(s)	104, 112, 323, 485
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	410, 479
StyD4I	CCNGG	1 cut(s)	204
TaqI	TCGA	5 cut(s)	23, 102, 123, 237, 436
TasI	AATT	4 cut(s)	104, 112, 323, 485
TauI	GCSGC	8 cut(s)	131, 167, 179, 182, 185, 188, 200, 283
TfiI	GAWTC	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	251, 336, 567
Tth111I	GACNNNGTC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	2 cut(s)	410, 479
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.