Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

4756141 .. 4758669

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCGAAGCTCAAGAATCCGATCAAAGAGTGAAGAAGAAGAAGAAGAGGAACACTATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCATCACCTCCTTCGCGAGATCACCTCCGCCTCCAAACAAGAAGCCCCTCTTCTTCCTCGAAATTCCACAATTACTACCTCGACGCCGCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCGCCGTCACCGTCACCCAACCCGGTCCAGCCCTCCCACTCGCTCTCGCCGTCTCCGTCACACTCGCCGAGGTTTCGGGTGTGCCATTCGCTTGGTGGAGGAACCGGATCGGAAAAAGTTTGATGCATCGGTTTTCAAAATAGCTTGCGCCCAGGCTGCAAAGAATAAATGGGTGGACTTTGGAAAGCAACTAGTGACCAGAAAGATCCAACATGTGGATAATGACAAGGTCCAGACTTTGCTTCTACGGATACAGGACGCAAGAAAACAACAAATAGCAGCAACAAAACAACAAATTAAGGGTAACAAAAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

179

Amino Acids

21.02

Weight (kDa)

11.61

Isoelectric Point (pI)

85.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	128, 187, 220, 223
AclWI	GGATC	2 cut(s)	336, 421
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	96, 184
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	11, 71, 365
AluI	AGCT	3 cut(s)	11, 71, 365
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	336, 421
AoxI	GGCC	2 cut(s)	3, 533
ApeKI	GCWGC	2 cut(s)	377, 500
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	246, 451
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	4 cut(s)	97, 114, 221, 227
AvaII	GGWCC	2 cut(s)	246, 451
BanII	GRGCYC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	364, 512
BceAI	ACGGC	4 cut(s)	83, 174, 210, 255
BciT130I	CCWGG	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	278
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	5 cut(s)	187, 220, 223, 378, 501
BlsI	GCNGC	5 cut(s)	188, 221, 224, 379, 502
Bme1390I	CCNGG	2 cut(s)	244, 374
Bme18I	GGWCC	2 cut(s)	246, 451
BmgT120I	GGNCC	2 cut(s)	246, 451
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	244, 374
BmsI	GCATC	2 cut(s)	334, 356
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	2 cut(s)	96, 184
BsaJI	CCNNGG	2 cut(s)	289, 372
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	289, 372
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	364, 512
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	5, 535
BsiSI	CCGG	2 cut(s)	244, 326
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	5, 535
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	22, 119, 328, 426
Bsp68I	TCGCGA	1 cut(s)	116
BspACI	CCGC	4 cut(s)	128, 187, 220, 223
BspANI	GGCC	2 cut(s)	5, 535
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	336, 421
BssECI	CCNNGG	2 cut(s)	289, 372
BssMI	GATC	4 cut(s)	22, 119, 328, 426
BssNI	GRCGYC	2 cut(s)	96, 184
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	41, 155
BstACI	GRCGYC	2 cut(s)	96, 184
BstC8I	GCNNGC	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	25, 122, 331, 429
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	4 cut(s)	22, 119, 328, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	242, 372
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	364, 512
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	2 cut(s)	203, 313
BstYI	RGATCY	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	5, 535
BtuMI	TCGCGA	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	246, 451
CseI	GACGC	3 cut(s)	104, 192, 488
CviAII	CATG	1 cut(s)	434
DpnI	GATC	4 cut(s)	24, 121, 330, 428
DpnII	GATC	4 cut(s)	22, 119, 328, 426
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	41, 155
EarI	CTCTTC	2 cut(s)	41, 155
EciI	GGCGGA	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	246, 451
EcoRII	CCWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	437
FaiI	YATR	3 cut(s)	59, 435, 538
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	187, 220, 223, 378, 501
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	5 cut(s)	187, 220, 223, 378, 501
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	5 cut(s)	187, 220, 223, 378, 501
HaeIII	GGCC	2 cut(s)	5, 535
HapII	CCGG	2 cut(s)	244, 326
HgaI	GACGC	3 cut(s)	104, 192, 488
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	2 cut(s)	96, 184
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	2 cut(s)	17, 77
HpaII	CCGG	2 cut(s)	244, 326
HphI	GGTGA	4 cut(s)	97, 114, 221, 227
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	22, 333
Hpy188III	TCNNGA	4 cut(s)	14, 74, 115, 454
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	2 cut(s)	98, 186
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	347, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
Hsp92I	GRCGYC	2 cut(s)	96, 184
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	22, 119, 328, 426
LpnPI	CCDG	8 cut(s)	257, 262, 339, 359, 386, 433, 461, 467
Lsp1109I	GCAGC	2 cut(s)	364, 512
LweI	GCATC	2 cut(s)	334, 356
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	5 cut(s)	227, 233, 278, 415, 524
MalI	GATC	4 cut(s)	24, 121, 330, 428
MboI	GATC	4 cut(s)	22, 119, 328, 426
MboII	GAAGA	7 cut(s)	46, 49, 52, 55, 58, 142, 145
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	162, 170, 516
MmeI	TCCRAC	1 cut(s)	454
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	519
MspI	CCGG	2 cut(s)	244, 326
MspR9I	CCNGG	2 cut(s)	244, 374
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	22, 119, 328, 426
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	4 cut(s)	227, 233, 278, 415
NruI	TCGCGA	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	437
PciI	ACATGT	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	4 cut(s)	187, 223, 268, 274
PfeI	GAWTC	2 cut(s)	17, 77
PflFI	GACNNNGTC	2 cut(s)	98, 449
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	188, 221, 224, 379, 502
PscI	ACATGT	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	246, 451
PsuI	RGATCY	1 cut(s)	426
PsyI	GACNNNGTC	2 cut(s)	98, 449
RruI	TCGCGA	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	5 cut(s)	187, 220, 223, 378, 501
Sau3AI	GATC	4 cut(s)	22, 119, 328, 426
Sau96I	GGNCC	2 cut(s)	246, 451
ScrFI	CCNGG	2 cut(s)	244, 374
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	13, 73, 110, 127, 181, 295, 367, 453
SfaNI	GCATC	2 cut(s)	334, 356
SinI	GGWCC	2 cut(s)	246, 451
SmlI	CTYRAG	2 cut(s)	12, 72
SmoI	CTYRAG	2 cut(s)	12, 72
SpeI	ACTAGT	1 cut(s)	412
Sse9I	AATT	3 cut(s)	162, 170, 516
SsiI	CCGC	4 cut(s)	128, 187, 220, 223
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	242, 372
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	80, 159, 181
TasI	AATT	3 cut(s)	162, 170, 516
TauI	GCSGC	3 cut(s)	189, 222, 225
TfiI	GAWTC	2 cut(s)	17, 77
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseFI	GTSAC	4 cut(s)	227, 233, 278, 415
TseI	GCWGC	2 cut(s)	377, 500
Tsp45I	GTSAC	4 cut(s)	227, 233, 278, 415
TspGWI	ACGGA	2 cut(s)	266, 484
Tth111I	GACNNNGTC	2 cut(s)	98, 449
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	246, 451
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.