Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

17910449 .. 17913614

Gene Structure 3166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGCAGATCAACACCCAAGAAAAGAAATACTGGAGAAGGCTATTCTTGGATACCTAGAGAACAACAACGATATCTCAAACTTGGAACAGTTTGCAGAACAGTTGGCAGCCGAAAACAAAAGCGAAATCAATCACAACGACATTGACAGTGCCATCAAGAGCCTCCGTGGTTTCGGATACATTGAGACTCACGACATTAGAAAGGAGTCATGGGTGCTGACTGAAGAAGGAAAGGGATATGCTGCTGCTGGATCACCTGAAGTGCAAGTGTTTTTGACCATACCAGCAGAAGGTATCACACAAGTAGAATTGAAGAAAAAGCTTGACGAGTCAGTTTTCCAGAGAGGTTTTGGTCGTGCTGCAAAGAACGAATGGGTAGAGATATCAAAGAAACTAATAACCAGAAAGGTTCAGCATGTAGATGACAAGGTCAGAGAATTGCTTATGAAAATACATGCCAATGAGGCAGTCGACCAAGCTGAAATTGAGGCTCTAAAGAAAAGGGAACTCATCCATAAGCAGACTCAAAAGGGATACTCGCCGGTTAAAAAGGGTCCAAATTATGCTCCCATAAGAAAGAAATTTGTTACTGATCTGACTCGTGAAAGTTTGCAGAACGGGGATTGGAAGGAATTGGAATTCAAAGAGTTCAACTTGAATGCTCAAGGTATATGCCTAGTAAATTTGGTGTATTACATCCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

6.41

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD3	PF18553	86 - 141	1.3e-12	PheRS DNA binding domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	584, 641, 685
AcuI	CTGAAG	2 cut(s)	246, 282
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	316, 646, 655, 661
AluBI	AGCT	2 cut(s)	325, 482
AluI	AGCT	2 cut(s)	325, 482
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	110, 245, 248, 362
ApoI	RAATTY	3 cut(s)	584, 641, 685
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	122, 232, 235, 349
BccI	CCATC	1 cut(s)	164
BciVI	GTATCC	3 cut(s)	47, 173, 530
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	59, 680
BfuI	GTATCC	3 cut(s)	47, 173, 530
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	5 cut(s)	6, 111, 246, 249, 363
BlsI	GCNGC	5 cut(s)	7, 112, 247, 250, 364
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	513, 699
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	122, 232, 235, 349
BsiSI	CCGG	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	10, 254, 595
BspACI	CCGC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	10, 254, 595
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	93, 105, 152
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	513, 699
BstKTI	GATC	3 cut(s)	13, 257, 598
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	10, 254, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	422, 461
BstV1I	GCAGC	4 cut(s)	122, 232, 235, 349
BsuI	GTATCC	3 cut(s)	47, 173, 530
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	513, 699
BtsIMutI	CAGTG	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	557
CviAII	CATG	3 cut(s)	213, 419, 458
CviJI	RGCY	6 cut(s)	44, 113, 165, 325, 482, 494
CviKI_1	RGCY	6 cut(s)	44, 113, 165, 325, 482, 494
DpnI	GATC	3 cut(s)	12, 256, 597
DpnII	GATC	3 cut(s)	10, 254, 595
Eco32I	GATATC	2 cut(s)	76, 387
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	246, 282
EcoRI	GAATTC	1 cut(s)	641
EcoRV	GATATC	2 cut(s)	76, 387
FaeI	CATG	3 cut(s)	216, 422, 461
FatI	CATG	3 cut(s)	212, 418, 457
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	6, 111, 246, 249, 363
FokI	GGATG	2 cut(s)	500, 686
Fsp4HI	GCNGC	5 cut(s)	6, 111, 246, 249, 363
FspBI	CTAG	2 cut(s)	59, 680
GluI	GCNGC	5 cut(s)	6, 111, 246, 249, 363
GsuI	CTGGAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	3 cut(s)	216, 422, 461
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	5 cut(s)	190, 209, 332, 526, 601
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	179, 437, 600
Hpy188III	TCNNGA	5 cut(s)	160, 194, 343, 605, 708
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	4 cut(s)	34, 224, 287, 625
HpyCH4III	ACNGT	3 cut(s)	93, 105, 152
HpyCH4V	TGCA	4 cut(s)	98, 268, 365, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	216, 422, 461
Kzo9I	GATC	3 cut(s)	10, 254, 595
LmnI	GCTCC	1 cut(s)	574
LpnPI	CCDG	7 cut(s)	20, 237, 273, 300, 356, 418, 558
Lsp1109I	GCAGC	4 cut(s)	122, 232, 235, 349
MaeI	CTAG	2 cut(s)	59, 680
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	3 cut(s)	12, 256, 597
MboI	GATC	3 cut(s)	10, 254, 595
MboII	GAAGA	2 cut(s)	239, 328
MluCI	AATT	8 cut(s)	311, 440, 486, 562, 584, 635, 641, 685
MlyI	GAGTC	5 cut(s)	184, 218, 341, 520, 595
MnlI	CCTC	4 cut(s)	176, 341, 460, 484
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	423, 462
MspI	CCGG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	667
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	3 cut(s)	10, 254, 595
NlaIII	CATG	3 cut(s)	216, 422, 461
NlaIV	GGNNCC	1 cut(s)	558
NspI	RCATGY	2 cut(s)	422, 461
PctI	GAATGC	1 cut(s)	667
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	7, 112, 247, 250, 364
PleI	GAGTC	5 cut(s)	184, 217, 340, 520, 595
PpsI	GAGTC	5 cut(s)	184, 217, 340, 520, 595
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	431
RseI	CAYNNNNRTG	2 cut(s)	423, 462
SalI	GTCGAC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	5 cut(s)	6, 111, 246, 249, 363
Sau3AI	GATC	3 cut(s)	10, 254, 595
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	5 cut(s)	184, 218, 341, 520, 595
SetI	ASST	9 cut(s)	60, 262, 298, 327, 352, 414, 435, 484, 673
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	423, 462
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	8 cut(s)	311, 440, 486, 562, 584, 635, 641, 685
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	59, 680
TaaI	ACNGT	3 cut(s)	93, 105, 152
TaqI	TCGA	1 cut(s)	474
TasI	AATT	8 cut(s)	311, 440, 486, 562, 584, 635, 641, 685
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	4 cut(s)	110, 245, 248, 362
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	3 cut(s)	584, 641, 685
XceI	RCATGY	2 cut(s)	422, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	2 cut(s)	59, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.