Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010605.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 618

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 275 bp

atggcgttagagccatggaaagtggtgtgtgtagcgtcatggctactaggaggaataaccatggcgtcatgctcacggttggcgccattaatggcgtcgtcacatgggacatgggcggtcttgtggtgccccaagacagctgcagatccagatgctgcattggttgcggtcttgctaagtcctggaatcaattttcgattcttgcttcttctcactctgaagaatggatgtccgtgtgaagtctttagtatacggagcatcatatcacgaccagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.81

Weight (kDa)

8.77

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	82, 126
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	2 cut(s)	116, 167
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	65, 83, 95
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	140, 155
AseI	ATTAAT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	82, 126
BbvI	GCAGC	2 cut(s)	127, 142
BciT130I	CCWGG	2 cut(s)	183, 273
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	2 cut(s)	141, 156
BlsI	GCNGC	2 cut(s)	142, 157
Bme1390I	CCNGG	2 cut(s)	183, 273
BmiI	GGNNCC	2 cut(s)	84, 128
BmrFI	CCNGG	2 cut(s)	183, 273
BmsI	GCATC	2 cut(s)	142, 267
BsaHI	GRCGYC	3 cut(s)	65, 83, 95
BsaJI	CCNNGG	2 cut(s)	14, 60
BseBI	CCWGG	2 cut(s)	183, 273
BseDI	CCNNGG	2 cut(s)	14, 60
BseGI	GGATG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	127, 142
BshNI	GGYRCC	2 cut(s)	82, 126
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	2 cut(s)	14, 60
BspACI	CCGC	2 cut(s)	116, 167
BspLI	GGNNCC	2 cut(s)	84, 128
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	82, 126
BssECI	CCNNGG	2 cut(s)	14, 60
BssMI	GATC	1 cut(s)	145
BssNAI	GTATAC	1 cut(s)	251
BssNI	GRCGYC	3 cut(s)	65, 83, 95
BssT1I	CCWWGG	2 cut(s)	14, 60
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	183, 273
Bst4CI	ACNGT	1 cut(s)	78
BstACI	GRCGYC	3 cut(s)	65, 83, 95
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	2 cut(s)	14, 60
BstF5I	GGATG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	183, 273
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	127, 142
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	251
BtgI	CCRYGG	2 cut(s)	14, 60
BtsCI	GGATG	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	85
CseI	GACGC	3 cut(s)	24, 54, 84
CviAII	CATG	6 cut(s)	15, 39, 61, 69, 104, 111
CviJI	RGCY	3 cut(s)	13, 43, 140
CviKI_1	RGCY	3 cut(s)	13, 43, 140
DdeI	CTNAG	1 cut(s)	176
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	14, 60
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	14, 60
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	14, 60
FaeI	CATG	6 cut(s)	18, 42, 64, 72, 107, 114
FaiI	YATR	8 cut(s)	16, 40, 62, 70, 105, 112, 251, 263
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	6 cut(s)	14, 38, 60, 68, 103, 110
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	141, 156
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	141, 156
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	141, 156
HaeII	RGCGCY	1 cut(s)	86
HgaI	GACGC	3 cut(s)	24, 54, 84
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	3 cut(s)	65, 83, 95
Hin1II	CATG	6 cut(s)	18, 42, 64, 72, 107, 114
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	2 cut(s)	186, 198
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	149, 267
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	143, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	176
Hsp92I	GRCGYC	3 cut(s)	65, 83, 95
Hsp92II	CATG	6 cut(s)	18, 42, 64, 72, 107, 114
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	4 cut(s)	162, 168, 195, 258
Lsp1109I	GCAGC	2 cut(s)	127, 142
LweI	GCATC	2 cut(s)	142, 267
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	200, 232
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	190
Mly113I	GGCGCC	1 cut(s)	83
MnlI	CCTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	183, 273
MvaI	CCWGG	2 cut(s)	183, 273
MwoI	GCNNNNNNNGC	1 cut(s)	164
NarI	GGCGCC	1 cut(s)	83
NcoI	CCATGG	2 cut(s)	14, 60
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	6 cut(s)	18, 42, 64, 72, 107, 114
NlaIV	GGNNCC	2 cut(s)	84, 128
NmuCI	GTSAC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	186, 198
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	142, 157
PluTI	GGCGCC	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	84, 128
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	141, 156
Sau3AI	GATC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	183, 273
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	142, 267
SfcI	CTRYAG	1 cut(s)	141
SfoI	GGCGCC	1 cut(s)	84
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	116, 167
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	14, 60
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	186, 198
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	140, 155
Tsp45I	GTSAC	1 cut(s)	99
TspGWI	ACGGA	2 cut(s)	222, 268
VspI	ATTAAT	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.