Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Reverse (-)

208171 .. 215359

Gene Structure 7189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggccgaagctcaagaatcgagcccccaaaacgacgccgtcatcacctccttctgcgagatcacctccgcctccaaaaaagaagtcctcttcttcctcgaattccacaattacgacctcgacgccgccgtttccactttcttggacaacgaaaacgccgccgctaacgacaccgccgccgccatcactgtcaccaacccgggtttggttgtttgtattgtagggtttcaggtgtgccattcgcttggtggaggaaccggatctggtatggggactctgttgattttgaaaatcagggaggaataccctgacaagatgatgctcactttctctgtgtttccatcaccaaaagtctccgatacggtggttgagccctataatgctaccttgtctgtgcaccagcatgttgagaatgcagatgagtgtatggttcttgataatgaagctctctatgacatttgcttccgcacactcaagctcagtaccccaagctttggcgatttgaaccatttgatttctgctaccatgtctggtgtgacttgctgtttgaggttccctgggcaactcaactctgacctcaaaaagttggctgtcaatctcattccattcccccgtctccacttttacagttggcgatttgaaccatttgatttctgctaccatgtctggtgtgacttgctgtttgagaaaaagtttgatgcatcggtgttcaaaatagcttgcgcccaggctgcaaagaataaatgggtggactttggaaagcaactagtgaccaaaaagatccaacatgtggataatgacaaggtccagactttgcttctacggatacaagacgcaacaaaacaacaaatagcagcaacaaaacaacaaattaagggttttcgctacttcaagttcctcgccgtgccatcctccatctttgccgtgattttcaccttgtgccaccaccttggagctgctttgggtctttgggacatgatcaagggtttttcttaccaccttccatatgtctacctcacggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

341

Amino Acids

38.15

Weight (kDa)

6.11

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	494, 790
AccI	GTMKAC	1 cut(s)	1011
AciI	CCGC	8 cut(s)	69, 126, 159, 162, 174, 177, 180, 466
AclWI	GGATC	2 cut(s)	268, 775
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	36, 123
AdeI	CACNNNGTG	1 cut(s)	939
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	3 cut(s)	205, 494, 790
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	5 cut(s)	289, 505, 641, 712, 892
AhlI	ACTAGT	1 cut(s)	766
AjnI	CCWGG	2 cut(s)	556, 726
AluBI	AGCT	6 cut(s)	11, 446, 478, 492, 719, 956
AluI	AGCT	6 cut(s)	11, 446, 478, 492, 719, 956
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	358, 620
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	268, 775
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	731, 854, 956
ApoI	RAATTY	1 cut(s)	101
ArsI	GACNNNNNNTTYG	6 cut(s)	69, 101, 529, 561, 665, 697
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	1 cut(s)	805
AsuC2I	CCSGG	2 cut(s)	200, 201
AsuHPI	GGTGA	5 cut(s)	37, 55, 184, 336, 925
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BanII	GRGCYC	2 cut(s)	26, 375
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	718, 866, 943
BccI	CCATC	4 cut(s)	191, 349, 916, 923
BceAI	ACGGC	4 cut(s)	23, 113, 887, 908
BciT130I	CCWGG	2 cut(s)	558, 728
BciVI	GTATCC	1 cut(s)	819
BclI	TGATCA	1 cut(s)	978
BcnI	CCSGG	2 cut(s)	200, 201
BcoDI	GTCTC	2 cut(s)	358, 620
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	8 cut(s)	126, 159, 162, 177, 180, 732, 855, 957
BlsI	GCNGC	8 cut(s)	127, 160, 163, 178, 181, 733, 856, 958
Bme1390I	CCNGG	4 cut(s)	200, 201, 558, 728
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	805
BmiI	GGNNCC	2 cut(s)	256, 554
BmrFI	CCNGG	4 cut(s)	200, 201, 558, 728
BmsI	GCATC	3 cut(s)	309, 688, 710
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	200, 201
BsaHI	GRCGYC	2 cut(s)	36, 123
BsaJI	CCNNGG	5 cut(s)	199, 556, 557, 726, 949
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 494, 790
BseBI	CCWGG	2 cut(s)	558, 728
BseDI	CCNNGG	5 cut(s)	199, 556, 557, 726, 949
BseGI	GGATG	1 cut(s)	908
BseLI	CCNNNNNNNGG	3 cut(s)	205, 494, 790
BseMII	CTCAG	1 cut(s)	493
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	718, 866, 943
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	200, 258
BslFI	GGGAC	2 cut(s)	286, 986
BslI	CCNNNNNNNGG	3 cut(s)	205, 494, 790
BsmAI	GTCTC	2 cut(s)	358, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	286, 986
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	3 cut(s)	26, 375, 399
Bsp143I	GATC	4 cut(s)	60, 260, 780, 978
BspACI	CCGC	8 cut(s)	69, 126, 159, 162, 174, 177, 180, 466
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	256, 554
BspPI	GGATC	2 cut(s)	268, 775
BssECI	CCNNGG	5 cut(s)	199, 556, 557, 726, 949
BssMI	GATC	4 cut(s)	60, 260, 780, 978
BssNI	GRCGYC	2 cut(s)	36, 123
BssT1I	CCWWGG	1 cut(s)	949
Bst2UI	CCWGG	2 cut(s)	558, 728
Bst4CI	ACNGT	4 cut(s)	190, 364, 629, 1021
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	36, 123
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	908
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	4 cut(s)	63, 263, 783, 981
BstMAI	GTCTC	2 cut(s)	358, 620
BstMBI	GATC	4 cut(s)	60, 260, 780, 978
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	2 cut(s)	558, 728
BstNSI	RCATGY	2 cut(s)	407, 791
BstSCI	CCNGG	4 cut(s)	198, 199, 556, 726
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	718, 866, 943
BstX2I	RGATCY	2 cut(s)	260, 780
BstXI	CCANNNNNNTGG	3 cut(s)	142, 245, 950
BstYI	RGATCY	2 cut(s)	260, 780
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	908
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	721
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	805
Cfr9I	CCCGGG	1 cut(s)	199
CseI	GACGC	3 cut(s)	44, 131, 842
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	5 cut(s)	404, 526, 662, 788, 976
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	4 cut(s)	62, 262, 782, 980
DpnII	GATC	4 cut(s)	60, 260, 780, 978
DraIII	CACNNNGTG	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	949
Eco24I	GRGCYC	2 cut(s)	26, 375
Eco47I	GGWCC	1 cut(s)	805
Eco88I	CYCGRG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	556, 726
EcoT14I	CCWWGG	1 cut(s)	949
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	26, 375
ErhI	CCWWGG	1 cut(s)	949
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	407, 529, 665, 791, 979
FaqI	GGGAC	2 cut(s)	286, 986
FatI	CATG	5 cut(s)	403, 525, 661, 787, 975
FauNDI	CATATG	1 cut(s)	1006
FbaI	TGATCA	1 cut(s)	978
FblI	GTMKAC	1 cut(s)	1011
Fnu4HI	GCNGC	8 cut(s)	126, 159, 162, 177, 180, 732, 855, 957
FokI	GGATG	1 cut(s)	895
FriOI	GRGCYC	2 cut(s)	26, 375
Fsp4HI	GCNGC	8 cut(s)	126, 159, 162, 177, 180, 732, 855, 957
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	8 cut(s)	126, 159, 162, 177, 180, 732, 855, 957
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	200, 258
HgaI	GACGC	3 cut(s)	44, 131, 842
HhaI	GCGC	1 cut(s)	725
Hin1I	GRCGYC	2 cut(s)	36, 123
Hin1II	CATG	5 cut(s)	407, 529, 665, 791, 979
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	2 cut(s)	17, 274
HpaII	CCGG	2 cut(s)	200, 258
HphI	GGTGA	5 cut(s)	37, 55, 184, 336, 925
Hpy166II	GTNNAC	3 cut(s)	397, 751, 1012
Hpy188I	TCNGA	2 cut(s)	358, 574
Hpy188III	TCNNGA	3 cut(s)	14, 434, 808
Hpy8I	GTNNAC	3 cut(s)	397, 751, 1012
Hpy99I	CGWCG	2 cut(s)	38, 125
HpyAV	CCTTC	2 cut(s)	61, 1010
HpyCH4III	ACNGT	4 cut(s)	190, 364, 629, 1021
HpyCH4V	TGCA	4 cut(s)	397, 416, 701, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	1 cut(s)	479
Hsp92I	GRCGYC	2 cut(s)	36, 123
Hsp92II	CATG	5 cut(s)	407, 529, 665, 791, 979
HspAI	GCGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	4 cut(s)	60, 260, 780, 978
LmnI	GCTCC	1 cut(s)	953
Lsp1109I	GCAGC	3 cut(s)	718, 866, 943
LweI	GCATC	3 cut(s)	309, 688, 710
MaeI	CTAG	1 cut(s)	767
MaeIII	GTNAC	4 cut(s)	190, 535, 671, 769
MalI	GATC	4 cut(s)	62, 262, 782, 980
MboI	GATC	4 cut(s)	60, 260, 780, 978
MboII	GAAGA	2 cut(s)	82, 85
MflI	RGATCY	2 cut(s)	260, 780
MhlI	GDGCHC	3 cut(s)	26, 375, 399
MluCI	AATT	3 cut(s)	101, 109, 870
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	808
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	200, 258
MspR9I	CCNGG	4 cut(s)	200, 201, 558, 728
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	558, 728
MwoI	GCNNNNNNNGC	1 cut(s)	731
NciI	CCSGG	2 cut(s)	200, 201
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	4 cut(s)	60, 260, 780, 978
NlaIII	CATG	5 cut(s)	407, 529, 665, 791, 979
NlaIV	GGNNCC	2 cut(s)	256, 554
NmuCI	GTSAC	4 cut(s)	190, 535, 671, 769
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	407, 791
PasI	CCCWGGG	1 cut(s)	557
PciI	ACATGT	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	2 cut(s)	38, 803
PflMI	CCANNNNNTGG	2 cut(s)	494, 790
PkrI	GCNGC	8 cut(s)	127, 160, 163, 178, 181, 733, 856, 958
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	556, 726
PspGI	CCWGG	2 cut(s)	556, 726
PspN4I	GGNNCC	2 cut(s)	256, 554
PspPI	GGNCC	1 cut(s)	805
PsuI	RGATCY	2 cut(s)	260, 780
PsyI	GACNNNGTC	2 cut(s)	38, 803
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	8 cut(s)	126, 159, 162, 177, 180, 732, 855, 957
Sau3AI	GATC	4 cut(s)	60, 260, 780, 978
Sau96I	GGNCC	1 cut(s)	805
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	200, 201, 558, 728
SduI	GDGCHC	3 cut(s)	26, 375, 399
SfaNI	GCATC	3 cut(s)	309, 688, 710
SinI	GGWCC	1 cut(s)	805
SmaI	CCCGGG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	12, 473
SmoI	CTYRAG	2 cut(s)	12, 473
SpeI	ACTAGT	1 cut(s)	766
Sse9I	AATT	3 cut(s)	101, 109, 870
SsiI	CCGC	8 cut(s)	69, 126, 159, 162, 174, 177, 180, 466
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	4 cut(s)	198, 199, 556, 726
StyI	CCWWGG	1 cut(s)	949
TaaI	ACNGT	4 cut(s)	190, 364, 629, 1021
TaqI	TCGA	3 cut(s)	20, 99, 120
TasI	AATT	3 cut(s)	101, 109, 870
TauI	GCSGC	5 cut(s)	128, 161, 164, 179, 182
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	4 cut(s)	190, 535, 671, 769
TseI	GCWGC	3 cut(s)	731, 854, 956
Tsp45I	GTSAC	4 cut(s)	190, 535, 671, 769
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	838
TspMI	CCCGGG	1 cut(s)	199
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	2 cut(s)	38, 803
Van91I	CCANNNNNTGG	2 cut(s)	494, 790
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	2 cut(s)	407, 791
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 245
XmaI	CCCGGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	1011
XspI	CTAG	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.