Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005532

Physical Location & Seq

Genomic Coordinates Forward (+)

30991987 .. 30994455

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCGAAGCTCGAGAATCCGATCAAAGAGTGAAGAAGAAGAAGAAGAGGAACACTATGGAAGCGAAGCTCAAGAATCGAGCCCCCAAAACGACGCCGTCATCACCTCCTTCGCGAGATCACCTCCGCCTCCAAACAAGAAGCCCTCTTCTTCCTCGAATTCCACAATTACGACCTCGACGCCTCCGTTTCCACTTTCTTGGACAACGAAAACGCCGCCGCCGTCACCGTCACCAACCCGGTCCAGCCCTCCCACTCGCTTTCGCCGTCTCCGTCACACTCGCCCGAGGTTTGGTTGTTTGTATTGTAGGGTTTCGGTGTGCCATTCGCTTGGTGGAGGAACCATATCGGTATGGGGACTCGTTGATTTCAAAAATCGGGGAGGAATACCACGACGGGATGATGCTCACTTTCTCTGTGTTTCCATCACCAAAAGTCTCCGATACGGTGGTTGAGCCCTATAATGCTACCTTGTACGTGCACCAGCTTGCGAGAATGCGGATGAGTAAAAAGTTTGATGCATCGGTTTTCAAAATAGCTTGCGCCCAGGCTGCAAAGAATAAATGGGTGGACTTTGGAAAGCAACTAGTGACCGAAAAGATCCAACATGTGGATAATGACAAGGTCCAGACTTTGCTTCTCCGGATACGGGACGCAACAAAACAACAAATTAAGGGTAACAAAAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009328 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2d

Protein Analysis

230

Amino Acids

26.57

Weight (kDa)

10.91

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32050
malus_domestica	MD00G1182400.v1.1 MD12G1073000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259031 RchiOBHm_Chr7g0184131
rosa_laevigata	RLG00000014562
rosa_multiflora	Rmu_co8134094.1_g000001 Rmu_sc0000049.1_g000001 Rmu_sc0000419.1_g000020 Rmu_sc0000441.1_g000126 Rmu_sc0001192.1_g000045 Rmu_sc0002312.1_g000001 Rmu_sc0002876.1_g000002 Rmu_sc0010605.1_g000001 Rmu_sc0011434.1_g000002 Rmu_ssc0000050.1_g000114
rosa_roxburghii	Rroxscaffold_1G00029840 Rroxscaffold_2G00142140 Rroxscaffold_4G00282660 Rroxscaffold_6G00408520
rosa_rugosa	Rorug05G0585000
rosa_samantha	Rh4AG076700 Rh4CG081600 Rh6AG101500 Rh6BG093500 Rh6BG192100 Rh6DG084800 Rh7AG082500 Rh7BG211600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	4 cut(s)	127, 217, 220, 499
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	95, 181
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	292, 610, 649
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	2 cut(s)	372, 532
AhlI	ACTAGT	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	4 cut(s)	11, 70, 487, 539
AluI	AGCT	4 cut(s)	11, 70, 487, 539
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	274, 442
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	2 cut(s)	12, 285
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	2 cut(s)	3, 686
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	242, 625
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	5 cut(s)	96, 113, 218, 224, 420
AvaI	CYCGRG	2 cut(s)	12, 285
AvaII	GGWCC	2 cut(s)	242, 625
BaeGI	GKGCMC	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanII	GRGCYC	2 cut(s)	85, 459
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	3 cut(s)	82, 207, 251
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	274, 442
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	639
BisI	GCNGC	3 cut(s)	217, 220, 552
BlsI	GCNGC	3 cut(s)	218, 221, 553
Bme1390I	CCNGG	2 cut(s)	240, 548
Bme18I	GGWCC	2 cut(s)	242, 625
BmeT110I	CYCGRG	2 cut(s)	12, 285
BmgT120I	GGNCC	2 cut(s)	242, 625
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	240, 548
BmsI	GCATC	3 cut(s)	393, 508, 530
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	478
BsaHI	GRCGYC	2 cut(s)	95, 181
BsaJI	CCNNGG	2 cut(s)	286, 546
BsaWI	WCCGGW	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 610, 649
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	286, 546
BseGI	GGATG	2 cut(s)	405, 507
BseLI	CCNNNNNNNGG	3 cut(s)	292, 610, 649
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	5, 688
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	2 cut(s)	12, 285
BsiSI	CCGG	2 cut(s)	240, 643
BslFI	GGGAC	2 cut(s)	371, 665
BslI	CCNNNNNNNGG	3 cut(s)	292, 610, 649
BsmAI	GTCTC	2 cut(s)	274, 442
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	2 cut(s)	371, 665
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	5, 688
BsoBI	CYCGRG	2 cut(s)	12, 285
Bsp1286I	GDGCHC	3 cut(s)	85, 459, 483
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	22, 118, 600
Bsp68I	TCGCGA	1 cut(s)	115
BspACI	CCGC	4 cut(s)	127, 217, 220, 499
BspANI	GGCC	2 cut(s)	5, 688
BspEI	TCCGGA	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	286, 546
BssMI	GATC	3 cut(s)	22, 118, 600
BssNI	GRCGYC	2 cut(s)	95, 181
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	230, 448
Bst6I	CTCTTC	2 cut(s)	41, 153
BstACI	GRCGYC	2 cut(s)	95, 181
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	489, 541
BstF5I	GGATG	2 cut(s)	405, 507
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	25, 121, 603
BstMAI	GTCTC	2 cut(s)	274, 442
BstMBI	GATC	3 cut(s)	22, 118, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	238, 546
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	600
BstXI	CCANNNNNNTGG	2 cut(s)	200, 331
BstYI	RGATCY	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	5, 688
BtsCI	GGATG	2 cut(s)	405, 507
BtuMI	TCGCGA	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	489, 541
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	242, 625
CseI	GACGC	3 cut(s)	103, 189, 662
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	3 cut(s)	24, 120, 602
DpnII	GATC	3 cut(s)	22, 118, 600
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	41, 153
EarI	CTCTTC	2 cut(s)	41, 153
EciI	GGCGGA	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	85, 459
Eco47I	GGWCC	2 cut(s)	242, 625
Eco88I	CYCGRG	2 cut(s)	12, 285
EcoRI	GAATTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	2 cut(s)	85, 459
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	611
FaiI	YATR	6 cut(s)	59, 346, 354, 462, 609, 691
FaqI	GGGAC	2 cut(s)	371, 665
FatI	CATG	1 cut(s)	607
Fnu4HI	GCNGC	3 cut(s)	217, 220, 552
FokI	GGATG	2 cut(s)	412, 514
FriOI	GRGCYC	2 cut(s)	85, 459
Fsp4HI	GCNGC	3 cut(s)	217, 220, 552
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	217, 220, 552
HaeIII	GGCC	2 cut(s)	5, 688
HapII	CCGG	2 cut(s)	240, 643
HgaI	GACGC	3 cut(s)	103, 189, 662
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	2 cut(s)	95, 181
Hin1II	CATG	1 cut(s)	611
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	17, 76, 359
HpaII	CCGG	2 cut(s)	240, 643
HphI	GGTGA	5 cut(s)	96, 113, 218, 224, 420
Hpy166II	GTNNAC	2 cut(s)	481, 571
Hpy188I	TCNGA	2 cut(s)	22, 442
Hpy188III	TCNNGA	5 cut(s)	14, 73, 114, 628, 643
Hpy8I	GTNNAC	2 cut(s)	481, 571
Hpy99I	CGWCG	3 cut(s)	97, 183, 398
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	230, 448
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	481, 521, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	2 cut(s)	95, 181
Hsp92II	CATG	1 cut(s)	611
HspAI	GCGC	1 cut(s)	543
Kpn2I	TCCGGA	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	22, 118, 600
LpnPI	CCDG	7 cut(s)	253, 258, 497, 533, 560, 641, 656
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	3 cut(s)	393, 508, 530
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	5 cut(s)	224, 230, 274, 589, 677
MalI	GATC	3 cut(s)	24, 120, 602
MboI	GATC	3 cut(s)	22, 118, 600
MboII	GAAGA	7 cut(s)	46, 49, 52, 55, 58, 140, 143
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	3 cut(s)	85, 459, 483
MluCI	AATT	3 cut(s)	159, 167, 669
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	628
Mph1103I	ATGCAT	1 cut(s)	523
MroI	TCCGGA	1 cut(s)	642
MseI	TTAA	1 cut(s)	672
MspI	CCGG	2 cut(s)	240, 643
MspR9I	CCNGG	2 cut(s)	240, 548
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	22, 118, 600
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	4 cut(s)	224, 230, 274, 589
NruI	TCGCGA	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	611
PaeR7I	CTCGAG	1 cut(s)	12
PciI	ACATGT	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	4 cut(s)	184, 220, 264, 270
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	17, 76
PflFI	GACNNNGTC	2 cut(s)	97, 623
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	218, 221, 553
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	242, 625
PsuI	RGATCY	1 cut(s)	600
PsyI	GACNNNGTC	2 cut(s)	97, 623
RruI	TCGCGA	1 cut(s)	115
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	3 cut(s)	217, 220, 552
Sau3AI	GATC	3 cut(s)	22, 118, 600
Sau96I	GGNCC	2 cut(s)	242, 625
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	240, 548
SduI	GDGCHC	3 cut(s)	85, 459, 483
SfaNI	GCATC	3 cut(s)	393, 508, 530
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	242, 625
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	12, 71
SmoI	CTYRAG	2 cut(s)	12, 71
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	3 cut(s)	159, 167, 669
SsiI	CCGC	4 cut(s)	127, 217, 220, 499
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	238, 546
TaaI	ACNGT	2 cut(s)	230, 448
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	13, 79, 157, 178
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	3 cut(s)	159, 167, 669
TauI	GCSGC	2 cut(s)	219, 222
TfiI	GAWTC	2 cut(s)	17, 76
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TseFI	GTSAC	4 cut(s)	224, 230, 274, 589
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	4 cut(s)	224, 230, 274, 589
TspGWI	ACGGA	2 cut(s)	176, 262
Tth111I	GACNNNGTC	2 cut(s)	97, 623
Van91I	CCANNNNNTGG	1 cut(s)	610
VneI	GTGCAC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	242, 625
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	12
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.