Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Reverse (-)

8335913 .. 8338362

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1115100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGGTGGTTCCGAGAGAAGCTGAGAAACTAAGCCTAAACAATGCTGGGTTTTTGGCGCAGAAGCGTCTTGCTCGAGGGTTGAGGCTGAATCACCCAGAAGCTGCAGCTCTCATAGCCACACAGATTTTGGAGTTCGTTCGAAATGGCGATAAATCTGTGGCGGAGTTGATGGACATTGGGAGACAGCTGCTGGGAAGGAAACAAGTTCTTCCTGGTGTTCACTATCTTTTGGATATGGTGCAGGTTGAAGGGACTTTTCGTGATGGGACCAAGTTAATCACCATTCACGATCCAATTTCTAGGGAGAACGGAAATCTGGAACTAGCTTTGAAGGATTCTTTTCTTCCTGTTCCCTCACTAGACAAGTTTCCTGAAATGGAAGATGGTAAAATTCCGGGTGAAATTATCCATGGAGGTGGTTGTATTGTGCTTAATCATGGAAGGAAAGCAATACTCCTCAGAGTTGTTAACCAAGGAGACAGGCCGGTTCAGGTTGGCAGTCACTATCACTTCATTGAGGTCAACCCCTGCCTGGTTTTTGATCGAATGAAATCATATGGCATGCACTTGAATATACCAGCTGGAACAGCCAAGAGATTTGAGCCGGGGGAAAGCAAACATGTTGCACTTGTAAGAATTGGAGGTACTAGAGTAATCAGAGGAGGAAATTGCATTGTGGATGGTTCGGTAGATGATGGCAAACTAAAGGAAGTCATGGAAGCCATACAAGCAAAGGAATTTGGACATGAGGAAGAACCAAATGCTAGTGAAGGTGTTGCAGGAAGCAATCCAGCTTTCACCACTGTAATTTCTCGTGAGGCATATGCAAACATGTATGGCCCTACTACTGGATTTTACTGTTTATGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009039 GO:0016787 GO:0016810 GO:0016811

KEGG Pathways

Metabolic & Signaling

ko00220 ko00230 ko00791 ko01100 ko01120 map00220 map00230 map00791 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1 Urease_alpha Urease_beta Urease_gamma

Protein Analysis

292

Amino Acids

31.87

Weight (kDa)

6.8

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Urease_gamma	PF00547	1 - 100	2.7e-40	Urease, gamma subunit
Urease_beta	PF00699	133 - 229	4.1e-40	Urease beta subunit
Urease_linker	PF18473	231 - 262	1.2e-11	Urease subunit beta-alpha linker domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	393, 740
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	2 cut(s)	535, 851
AflIII	ACRYGT	2 cut(s)	622, 834
AgsI	TTSAA	3 cut(s)	251, 334, 574
AjnI	CCWGG	2 cut(s)	214, 534
AluBI	AGCT	7 cut(s)	23, 104, 110, 190, 329, 584, 797
AluI	AGCT	7 cut(s)	23, 104, 110, 190, 329, 584, 797
Alw26I	GTCTC	2 cut(s)	178, 474
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	2 cut(s)	104, 193
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	485, 841
ApeKI	GCWGC	3 cut(s)	104, 107, 190
ApoI	RAATTY	2 cut(s)	393, 740
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	270, 842
AsuC2I	CCSGG	2 cut(s)	399, 609
AsuHPI	GGTGA	4 cut(s)	86, 274, 413, 793
AsuII	TTCGAA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	270
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BauI	CACGAG	1 cut(s)	816
BbvI	GCAGC	3 cut(s)	91, 119, 177
BccI	CCATC	5 cut(s)	166, 260, 380, 677, 692
BciT130I	CCWGG	2 cut(s)	216, 536
BcnI	CCSGG	2 cut(s)	399, 609
BcoDI	GTCTC	2 cut(s)	178, 474
BfaI	CTAG	5 cut(s)	303, 326, 362, 651, 768
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	105, 108, 191
BlsI	GCNGC	3 cut(s)	106, 109, 192
Bme1390I	CCNGG	4 cut(s)	216, 399, 536, 609
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	270, 842
BmiI	GGNNCC	2 cut(s)	12, 271
BmrFI	CCNGG	4 cut(s)	216, 399, 536, 609
Bpu14I	TTCGAA	1 cut(s)	142
BpuMI	CCSGG	2 cut(s)	399, 609
BsaJI	CCNNGG	3 cut(s)	412, 475, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 851
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	856
BseBI	CCWGG	2 cut(s)	216, 536
BseDI	CCNNGG	3 cut(s)	412, 475, 608
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	535, 851
BseMII	CTCAG	2 cut(s)	15, 475
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	2 cut(s)	449, 678
BseXI	GCAGC	3 cut(s)	91, 119, 177
BseYI	CCCAGC	2 cut(s)	47, 193
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	487, 843
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	3 cut(s)	398, 488, 608
BslFI	GGGAC	2 cut(s)	268, 283
BslI	CCNNNNNNNGG	2 cut(s)	535, 851
BsmAI	GTCTC	2 cut(s)	178, 474
BsmFI	GGGAC	2 cut(s)	268, 283
BsnI	GGCC	2 cut(s)	487, 843
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	292, 544
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	487, 843
BspCNI	CTCAG	2 cut(s)	16, 474
BspLI	GGNNCC	2 cut(s)	12, 271
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	412, 475, 608
BssMI	GATC	2 cut(s)	292, 544
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	2 cut(s)	412, 475
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	216, 536
Bst4CI	ACNGT	2 cut(s)	808, 863
BstBI	TTCGAA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	24, 32, 461
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	295, 547
BstMAI	GTCTC	2 cut(s)	178, 474
BstMBI	GATC	2 cut(s)	292, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 590, 731
BstNI	CCWGG	2 cut(s)	216, 536
BstNSI	RCATGY	3 cut(s)	568, 626, 838
BstSCI	CCNGG	4 cut(s)	214, 397, 534, 607
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	91, 119, 177
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	487, 843
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	804
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	566
CaiI	CAGNNNCTG	2 cut(s)	104, 193
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	2 cut(s)	270, 842
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	7 cut(s)	413, 440, 565, 623, 718, 749, 835
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	3 cut(s)	24, 32, 461
DpnI	GATC	2 cut(s)	294, 546
DpnII	GATC	2 cut(s)	292, 544
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	412, 475
Eco47I	GGWCC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	214, 534
EcoT14I	CCWWGG	2 cut(s)	412, 475
ErhI	CCWWGG	2 cut(s)	412, 475
FaeI	CATG	7 cut(s)	416, 443, 568, 626, 721, 752, 838
FaqI	GGGAC	2 cut(s)	268, 283
FatI	CATG	7 cut(s)	412, 439, 564, 622, 717, 748, 834
FauNDI	CATATG	2 cut(s)	559, 826
Fnu4HI	GCNGC	3 cut(s)	105, 108, 191
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	3 cut(s)	105, 108, 191
FspBI	CTAG	5 cut(s)	303, 326, 362, 651, 768
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	105, 108, 191
GsaI	CCCAGC	2 cut(s)	51, 197
HaeIII	GGCC	2 cut(s)	487, 843
HapII	CCGG	3 cut(s)	398, 488, 608
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	7 cut(s)	416, 443, 568, 626, 721, 752, 838
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	472, 526
HindII	GTYRAC	2 cut(s)	472, 526
HinfI	GANTC	2 cut(s)	91, 338
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	3 cut(s)	398, 488, 608
HphI	GGTGA	4 cut(s)	86, 274, 413, 793
Hpy166II	GTNNAC	3 cut(s)	223, 472, 526
Hpy188I	TCNGA	3 cut(s)	15, 464, 662
Hpy188III	TCNNGA	5 cut(s)	263, 290, 320, 374, 818
Hpy8I	GTNNAC	3 cut(s)	223, 472, 526
HpyAV	CCTTC	5 cut(s)	192, 245, 328, 438, 767
HpyCH4III	ACNGT	2 cut(s)	808, 863
HpyCH4V	TGCA	7 cut(s)	107, 244, 568, 629, 675, 782, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 590, 731
HpyF3I	CTNAG	3 cut(s)	24, 32, 461
Hsp92II	CATG	7 cut(s)	416, 443, 568, 626, 721, 752, 838
HspAI	GCGC	1 cut(s)	59
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	292, 544
Lsp1109I	GCAGC	3 cut(s)	91, 119, 177
MaeI	CTAG	5 cut(s)	303, 326, 362, 651, 768
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	294, 546
MboI	GATC	2 cut(s)	292, 544
MboII	GAAGA	4 cut(s)	203, 338, 395, 767
MluCI	AATT	7 cut(s)	297, 393, 405, 639, 670, 740, 810
MseI	TTAA	3 cut(s)	278, 435, 471
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	2 cut(s)	190, 584
MspI	CCGG	3 cut(s)	398, 488, 608
MspR9I	CCNGG	4 cut(s)	216, 399, 536, 609
MvaI	CCWGG	2 cut(s)	216, 536
MwoI	GCNNNNNNNGC	3 cut(s)	116, 590, 731
NciI	CCSGG	2 cut(s)	399, 609
NcoI	CCATGG	1 cut(s)	412
NdeI	CATATG	2 cut(s)	559, 826
NdeII	GATC	2 cut(s)	292, 544
NlaIII	CATG	7 cut(s)	416, 443, 568, 626, 721, 752, 838
NlaIV	GGNNCC	2 cut(s)	12, 271
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	3 cut(s)	568, 626, 838
NspV	TTCGAA	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	568
PaeR7I	CTCGAG	1 cut(s)	75
PciI	ACATGT	2 cut(s)	622, 834
PfeI	GAWTC	2 cut(s)	91, 338
PkrI	GCNGC	3 cut(s)	106, 109, 192
PscI	ACATGT	2 cut(s)	622, 834
Psp6I	CCWGG	2 cut(s)	214, 534
PspFI	CCCAGC	2 cut(s)	47, 193
PspGI	CCWGG	2 cut(s)	214, 534
PspN4I	GGNNCC	2 cut(s)	12, 271
PspPI	GGNCC	2 cut(s)	270, 842
PspXI	VCTCGAGB	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	2 cut(s)	104, 193
PvuII	CAGCTG	2 cut(s)	190, 584
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	278, 435, 471
SatI	GCNGC	3 cut(s)	105, 108, 191
Sau3AI	GATC	2 cut(s)	292, 544
Sau96I	GGNCC	2 cut(s)	270, 842
ScrFI	CCNGG	4 cut(s)	216, 399, 536, 609
SfcI	CTRYAG	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	7 cut(s)	297, 393, 405, 639, 670, 740, 810
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	5 cut(s)	303, 326, 362, 651, 768
StyD4I	CCNGG	4 cut(s)	214, 397, 534, 607
StyI	CCWWGG	2 cut(s)	412, 475
TaaI	ACNGT	2 cut(s)	808, 863
TaqI	TCGA	3 cut(s)	76, 142, 547
TasI	AATT	7 cut(s)	297, 393, 405, 639, 670, 740, 810
TfiI	GAWTC	2 cut(s)	91, 338
Tru1I	TTAA	3 cut(s)	278, 435, 471
Tru9I	TTAA	3 cut(s)	278, 435, 471
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	104, 107, 190
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	17, 505, 566
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	2 cut(s)	393, 740
XceI	RCATGY	3 cut(s)	568, 626, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	5 cut(s)	303, 326, 362, 651, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.