Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Forward (+)

11990343 .. 11993423

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTATGCATTCAGATTCTTTTTTCTGATGGATCTACATCTGGGAGAGTGGAGTCTGTGGAAGGTGGTGATTTGGGAATGACGAGAATGAATCTAGGGATTAGTGGTGAGGAATCGGGGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCATGGCTATGTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATACTCAGTGTGTTGTATGCATGACATTTCGGACATTGTTATAAGAGTTCTGCAATGCATTTTTGAGTCACTTTCATACCCAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGGAGTTTTTGGCTCAGCGTTCCAGGTTGGACTTTTTAGTCTTGTTCCGCTGCAAGGTAACTACTTCCACTGTGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAACAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGTAGAGCTTGCTGGGAAGCAAGTGCAATGTCTTGGAAAGTATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGGTATTGGAGATTCATGTGGGTTTGACAACTTTCCTAGCCTTGGATTGACACTTTTTAAGAACACGTTTTATTTCGACTTCAGTCCTACTTATGTCGGATGTGGTCTTATTTGCCCTCACATAGTCAACTGCTCAGTACTTCTTAGGGTTATCATATCATGGGGTTTCCTTTGGCCTCTCATATCCCAACATGCTGGGCACTGGTATCCAACTGACCTTGGTAGCAATGATTTCAAAGGTCTTTATGGATATAAGGTCTTCATAGCTATTGCCCTTATTTTGGGGGATGGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

303

Amino Acids

33.7

Weight (kDa)

5.68

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	149 - 303	8.7e-33	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AasI	GACNNNNNNGTC	1 cut(s)	407
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	595, 679
AfaI	GTAC	2 cut(s)	215, 753
AfiI	CCNNNNNNNGG	4 cut(s)	173, 424, 656, 895
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	353, 850
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	8 cut(s)	128, 162, 202, 313, 510, 535, 594, 881
AluI	AGCT	8 cut(s)	128, 162, 202, 313, 510, 535, 594, 881
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	420, 594
AseI	ATTAAT	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	80, 119
BaeGI	GKGCMC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	407, 581
BccI	CCATC	2 cut(s)	23, 896
BciT130I	CCWGG	1 cut(s)	394
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	501
BfaI	CTAG	2 cut(s)	95, 651
BfmI	CTRYAG	2 cut(s)	357, 908
BfuI	GTATCC	1 cut(s)	831
BisI	GCNGC	2 cut(s)	421, 595
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	2 cut(s)	422, 596
BmcAI	AGTACT	1 cut(s)	753
Bme1390I	CCNGG	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	394
BmrI	ACTGGG	2 cut(s)	299, 471
BmuI	ACTGGG	2 cut(s)	299, 471
BoxI	GACNNNNGTC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	865
Bpu1102I	GCTNAGC	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	655, 832
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 424, 656, 895
Bse1I	ACTGG	3 cut(s)	305, 477, 821
Bse3DI	GCAATG	3 cut(s)	284, 560, 847
Bse8I	GATNNNNATC	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	655, 832
BseGI	GGATG	2 cut(s)	719, 907
BseJI	GATNNNNATC	1 cut(s)	37
BseLI	CCNNNNNNNGG	4 cut(s)	173, 424, 656, 895
BseMI	GCAATG	3 cut(s)	284, 560, 847
BseMII	CTCAG	4 cut(s)	143, 243, 398, 762
BseNI	ACTGG	3 cut(s)	305, 477, 821
BseSI	GKGCMC	1 cut(s)	816
BseXI	GCAGC	2 cut(s)	407, 581
BseYI	CCCAGC	3 cut(s)	146, 539, 809
BshFI	GGCC	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	173, 424, 656, 895
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	790
Bsp1286I	GDGCHC	2 cut(s)	315, 816
Bsp143I	GATC	2 cut(s)	32, 501
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	4 cut(s)	142, 242, 397, 761
BspPI	GGATC	1 cut(s)	40
BsrDI	GCAATG	3 cut(s)	284, 560, 847
BsrI	ACTGG	3 cut(s)	305, 477, 821
BssECI	CCNNGG	2 cut(s)	655, 832
BssMI	GATC	2 cut(s)	32, 501
BssT1I	CCWWGG	2 cut(s)	655, 832
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	6 cut(s)	129, 229, 384, 572, 748, 758
BstF5I	GGATG	2 cut(s)	719, 907
BstKTI	GATC	2 cut(s)	35, 504
BstMBI	GATC	2 cut(s)	32, 501
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	809
BstPAI	GACNNNNGTC	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	357, 908
BstSLI	GKGCMC	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	407, 581
BstV2I	GAAGAC	1 cut(s)	865
BstX2I	RGATCY	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	719, 907
BtsIMutI	CAGTG	5 cut(s)	237, 438, 484, 619, 814
Cac8I	GCNNGC	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	214, 752
CviAII	CATG	6 cut(s)	178, 245, 577, 630, 774, 806
CviQI	GTAC	2 cut(s)	214, 752
DdeI	CTNAG	6 cut(s)	129, 229, 384, 572, 748, 758
DpnI	GATC	2 cut(s)	34, 503
DpnII	GATC	2 cut(s)	32, 501
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	655, 832
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	595, 679
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	655, 832
EcoT22I	ATGCAT	3 cut(s)	11, 246, 284
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	655, 832
FaeI	CATG	6 cut(s)	181, 248, 580, 633, 777, 809
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	6 cut(s)	177, 244, 576, 629, 773, 805
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	421, 595
FokI	GGATG	1 cut(s)	726
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	421, 595
FspBI	CTAG	2 cut(s)	95, 651
GluI	GCNGC	2 cut(s)	421, 595
GsaI	CCCAGC	3 cut(s)	150, 543, 813
HaeIII	GGCC	1 cut(s)	790
Hin1II	CATG	6 cut(s)	181, 248, 580, 633, 777, 809
HincII	GTYRAC	2 cut(s)	189, 742
HindII	GTYRAC	2 cut(s)	189, 742
HinfI	GANTC	6 cut(s)	16, 53, 91, 113, 290, 626
HphI	GGTGA	2 cut(s)	80, 119
Hpy166II	GTNNAC	2 cut(s)	189, 742
Hpy188I	TCNGA	4 cut(s)	15, 28, 256, 713
Hpy8I	GTNNAC	2 cut(s)	189, 742
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	7 cut(s)	9, 220, 244, 277, 282, 423, 553
HpyF3I	CTNAG	6 cut(s)	129, 229, 384, 572, 748, 758
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	6 cut(s)	181, 248, 580, 633, 777, 809
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	32, 501
LmnI	GCTCC	1 cut(s)	591
Lsp1109I	GCAGC	2 cut(s)	407, 581
MaeI	CTAG	2 cut(s)	95, 651
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	291, 427
MalI	GATC	2 cut(s)	34, 503
MboI	GATC	2 cut(s)	32, 501
MboII	GAAGA	2 cut(s)	601, 865
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	315, 816
MluCI	AATT	2 cut(s)	154, 585
MlyI	GAGTC	2 cut(s)	62, 299
MmeI	TCCRAC	3 cut(s)	378, 691, 848
MnlI	CCTC	3 cut(s)	103, 741, 801
Mph1103I	ATGCAT	3 cut(s)	11, 246, 284
MseI	TTAA	4 cut(s)	153, 584, 600, 672
MslI	CAYNNNNRTG	2 cut(s)	182, 494
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	32, 501
NlaIII	CATG	6 cut(s)	181, 248, 580, 633, 777, 809
NmuCI	GTSAC	1 cut(s)	291
NsiI	ATGCAT	3 cut(s)	11, 246, 284
NspI	RCATGY	1 cut(s)	809
PctI	GAATGC	1 cut(s)	9
PfeI	GAWTC	4 cut(s)	16, 91, 113, 626
PkrI	GCNGC	2 cut(s)	422, 596
PleI	GAGTC	2 cut(s)	61, 298
PpsI	GAGTC	2 cut(s)	61, 298
PshAI	GACNNNNGTC	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	392
PspFI	CCCAGC	3 cut(s)	146, 539, 809
PspGI	CCWGG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	2 cut(s)	215, 753
RsaNI	GTAC	2 cut(s)	214, 752
RseI	CAYNNNNRTG	2 cut(s)	182, 494
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	153, 584, 600, 672
SatI	GCNGC	2 cut(s)	421, 595
Sau3AI	GATC	2 cut(s)	32, 501
ScaI	AGTACT	1 cut(s)	753
SchI	GAGTC	2 cut(s)	62, 299
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	315, 816
SfcI	CTRYAG	2 cut(s)	357, 908
SmiMI	CAYNNNNRTG	2 cut(s)	182, 494
Sse9I	AATT	2 cut(s)	154, 585
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	2 cut(s)	95, 651
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	655, 832
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	1 cut(s)	690
TasI	AATT	2 cut(s)	154, 585
TatI	WGTACW	2 cut(s)	213, 751
TfiI	GAWTC	4 cut(s)	16, 91, 113, 626
Tru1I	TTAA	4 cut(s)	153, 584, 600, 672
Tru9I	TTAA	4 cut(s)	153, 584, 600, 672
TscAI	CASTG	5 cut(s)	237, 445, 484, 619, 821
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	2 cut(s)	420, 594
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	4 cut(s)	104, 288, 618, 865
TspRI	CASTG	5 cut(s)	237, 445, 484, 619, 821
VspI	ATTAAT	1 cut(s)	153
XceI	RCATGY	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	95, 651
ZrmI	AGTACT	1 cut(s)	753
Zsp2I	ATGCAT	3 cut(s)	11, 246, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.