Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Reverse (-)

54137857 .. 54144862

Gene Structure 7006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG419200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGTGAAGCAAATTGTGGTGGGAATGAAGCGGGAGATGAAGTGAGGTTAGCGAAGGGCAATGACTTGGCTGAGTCTGTGTCTTGCAGCTCATCTCCGTCCAATAATGATAGTGATGATTATGGTGTTGGTATTGCTGTGAGGGTGCAGCCAATCCATAGTGTGTTTTCTCTGAATAGGAAGTTCAGACGTAGTGTTTCGTCTTCGTGGCAAAGGGGTCAGCTTTTGGGGAGTGGTTCCTATGGAACTGTTTATGAAGGATTTACTGATGATGGATTCTTTTTTGTTGTAAAGGAGGTTTCATTACTCGATCAAGGAAGCCAGGGAAAGCAGAGTTTTTTACAACTTAAGCAGGATGAGACTAAGCTCTACATCTTACTTGAGCTTGTAACAAAAGGATCACTTGAAAGTCTCTATTCAAAGTATCTCTTGAGGGATTCTCAAGTCTCTGTGTTCACAAGGCAGATTTTGAGTGGCTTAAAATATCTTCATGATCGTAATGCGCTCCACAGGTTAAAGGGTTTCAGCGTATGGCTTACTGTGGTTCTTATTGAAATCAGATTTAGGCGATTCAATCCTCTTGTGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

197

Amino Acids

22.06

Weight (kDa)

8.85

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	115 - 171	2e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	406
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	407, 420, 554, 574
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	4 cut(s)	90, 223, 367, 385
AluI	AGCT	4 cut(s)	90, 223, 367, 385
Alw26I	GTCTC	3 cut(s)	353, 416, 451
AlwI	GGATC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	87, 148
AspLEI	GCGC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	99, 160
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	353, 416, 451
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	88, 149
BlsI	GCNGC	2 cut(s)	89, 150
Bme1390I	CCNGG	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	3 cut(s)	401, 426, 451
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	99, 160
BsgI	GTGCAG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	353, 416, 451
Bsp143I	GATC	3 cut(s)	310, 398, 493
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	310, 398, 493
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	250, 541
BstAFI	CTTAAG	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	72, 363
BstF5I	GGATG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	3 cut(s)	313, 401, 496
BstMAI	GTCTC	3 cut(s)	353, 416, 451
BstMBI	GATC	3 cut(s)	310, 398, 493
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	99, 160
BstV2I	GAAGAC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	361
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	505
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	9 cut(s)	71, 90, 151, 223, 321, 367, 385, 477, 535
CviKI_1	RGCY	9 cut(s)	71, 90, 151, 223, 321, 367, 385, 477, 535
DdeI	CTNAG	2 cut(s)	72, 363
DpnI	GATC	3 cut(s)	312, 400, 495
DpnII	GATC	3 cut(s)	310, 398, 493
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	494
FaiI	YATR	7 cut(s)	123, 159, 243, 255, 492, 532, 592
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 413, 445
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	88, 149
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	88, 149
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	88, 149
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	4 cut(s)	74, 276, 437, 570
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	174, 188, 560
Hpy188III	TCNNGA	2 cut(s)	430, 491
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	2 cut(s)	49, 251
HpyCH4III	ACNGT	2 cut(s)	250, 541
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	87, 148
HpyF3I	CTNAG	2 cut(s)	72, 363
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	3 cut(s)	310, 398, 493
LmnI	GCTCC	1 cut(s)	510
LpnPI	CCDG	4 cut(s)	308, 335, 338, 496
Lsp1109I	GCAGC	2 cut(s)	99, 160
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	312, 400, 495
MboI	GATC	3 cut(s)	310, 398, 493
MboII	GAAGA	2 cut(s)	195, 479
MluCI	AATT	2 cut(s)	13, 587
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	39, 135, 289, 426, 588
MseI	TTAA	3 cut(s)	348, 479, 515
MspCI	CTTAAG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
NdeII	GATC	3 cut(s)	310, 398, 493
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	276, 437, 570
PkrI	GCNGC	2 cut(s)	89, 150
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	348, 479, 515
SatI	GCNGC	2 cut(s)	88, 149
Sau3AI	GATC	3 cut(s)	310, 398, 493
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	8 cut(s)	50, 92, 193, 225, 300, 369, 387, 515
SmlI	CTYRAG	4 cut(s)	347, 380, 430, 441
SmoI	CTYRAG	4 cut(s)	347, 380, 430, 441
Sse9I	AATT	2 cut(s)	13, 587
SsiI	CCGC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	250, 541
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	309
TasI	AATT	2 cut(s)	13, 587
TfiI	GAWTC	3 cut(s)	276, 437, 570
Tru1I	TTAA	3 cut(s)	348, 479, 515
Tru9I	TTAA	3 cut(s)	348, 479, 515
TseI	GCWGC	2 cut(s)	87, 148
TspDTI	ATGAA	5 cut(s)	42, 54, 270, 291, 479
TspGWI	ACGGA	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.