Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Forward (+)

6458921 .. 6463226

Gene Structure 4306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATTGAATGGAGCTATTTGGATTTTAGTCTAATTTTTTGCATTTGGTCTTTGCAGTCTGCACTTGCCGGTGAGTCACTTCCTGTGACCAAAGGCCCTGCTGTGGTGATTGCCACTGGTGTTCATACCTTTTTCGGCAAGGCTGCTCATCTTGTCGATAACACAAATCAACAGGGCCACTTTCAAAAGGATGATACTAAGCTCTACATCGTACTTGAGCTTGTAACAAAAGGATCACTTGAAAGTCTTTATTCAAAGTATCTCTTGAGGGATTCTCAAGTCTCTGTGTTCACAAGGCAGATTTTGAGTGGCTTGAAATATTTTCATGATCATAATGTGCTCCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0140096 GO:1901564 GO:1901698 GO:1901700 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Pkinase

Protein Analysis

116

Amino Acids

13.13

Weight (kDa)

6.96

Isoelectric Point (pI)

27.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 115	3.7e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	5 cut(s)	8, 185, 242, 255, 316
AluBI	AGCT	3 cut(s)	15, 202, 220
AluI	AGCT	3 cut(s)	15, 202, 220
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	94, 175
ApeKI	GCWGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	95, 175
AsuHPI	GGTGA	2 cut(s)	83, 118
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	95, 175
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	3 cut(s)	236, 261, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	96, 177
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	96, 177
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	233, 328
BspANI	GGCC	2 cut(s)	96, 177
BspHI	TCATGA	1 cut(s)	325
BspPI	GGATC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	2 cut(s)	233, 328
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	236, 331
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	233, 328
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	96, 177
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	114
CciI	TCATGA	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	95, 175
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	7 cut(s)	15, 96, 143, 177, 202, 220, 312
CviKI_1	RGCY	7 cut(s)	15, 96, 143, 177, 202, 220, 312
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	235, 330
DpnII	GATC	2 cut(s)	233, 328
EcoO109I	RGGNCCY	1 cut(s)	95
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	126, 327, 333
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 248, 280
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	96, 177
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	2 cut(s)	74, 272
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	83, 118
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	265, 326
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	42, 55, 62
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	233, 328
LmnI	GCTCC	2 cut(s)	12, 345
LpnPI	CCDG	5 cut(s)	82, 96, 102, 111, 158
Lsp1109I	GCAGC	1 cut(s)	130
MaeIII	GTNAC	3 cut(s)	75, 85, 223
MalI	GATC	2 cut(s)	235, 330
MboI	GATC	2 cut(s)	233, 328
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	1 cut(s)	261
MspI	CCGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	233, 328
NlaIII	CATG	1 cut(s)	329
NmuCI	GTSAC	2 cut(s)	75, 85
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	95, 175
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	233, 328
Sau96I	GGNCC	2 cut(s)	95, 175
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	5 cut(s)	17, 131, 204, 222, 350
SmlI	CTYRAG	3 cut(s)	215, 265, 276
SmoI	CTYRAG	3 cut(s)	215, 265, 276
Sse9I	AATT	1 cut(s)	33
SspI	AATATT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	75, 85
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	75, 85
TspDTI	ATGAA	2 cut(s)	113, 314
TspRI	CASTG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.