Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Forward (+)

57850735 .. 57869544

Gene Structure 18810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG408000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGGCTCCGAGTCCGATAGCAGGCGCTCTCGCAAACCCCACCCCGAAAGCTAACCACTCAGTCGTCATCGCAGTAATACACCTGATAAGGCTAGTAGAAAGACTTACTTTAACAAGTCGTTGTGGCCTGGGTAATGGGAGAGCCTTCTGTTCTGGTGCAGGTGCTGTTACCCTTTATCAACTAGTCAATCAAGGGAATGTTGAGGAATGCAGAAAGTTTTACGAGACATTGTATAAGTTTGTATATATTCAAGGAACATACTTGAAGCCACATGATGAGACTAAGCTCTACATCTTACTTGAGCTTGTAACAAAAGGATCACTTGAAAGTCTCTATTCAAAGTATCTCTTGAGGAATTCTCAAGTCTCTGTGTTCACAAGGCAGATTTTGAGTGGCTTGAAATATCTTCATGATCGTAATGTGCTCCACAGAATGGGAGGGTTTATAAACCAGAGGACCACCGCTGGTGTCGAGAAGCTTCTCTTCCAGCTCTCGGAGCCTGTCATATTTCGCTCTTTGCAGGTTGCGAATTCTAATGTTCGTCAAAATGCGCTGCATTTACTTTTGGACTTGTTCCCTCTTGAAGATCCTGATTCGACTAAAGAGGTTAAAGATTCATTGCTTGATAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Condensin2nSMC

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

9.34

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 145	3.3e-09	Protein kinase domain
Condensin2nSMC	PF12422	140 - 197	3.3e-18	Condensin II non structural maintenance of chromosomes subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	449
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	152, 514
AccB7I	CCANNNNNTGG	1 cut(s)	436
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	2 cut(s)	328, 584
AcsI	RAATTY	2 cut(s)	358, 532
AfiI	CCNNNNNNNGG	3 cut(s)	23, 436, 496
AgsI	TTSAA	6 cut(s)	254, 268, 329, 342, 403, 587
AhlI	ACTAGT	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	53, 289, 307, 481, 493
AluI	AGCT	5 cut(s)	53, 289, 307, 481, 493
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	4 cut(s)	221, 275, 338, 373
AlwI	GGATC	2 cut(s)	328, 584
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	2 cut(s)	358, 532
AspLEI	GCGC	2 cut(s)	29, 556
AspS9I	GGNCC	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	543
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	4 cut(s)	221, 275, 338, 373
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	2 cut(s)	95, 185
BfoI	RGCGCY	1 cut(s)	30
BfuAI	ACCTGC	2 cut(s)	152, 514
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	9, 501
BmrFI	CCNGG	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpuEI	CTTGAG	3 cut(s)	323, 348, 373
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 436, 496
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	23, 436, 496
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	23, 436, 496
BsmAI	GTCTC	4 cut(s)	221, 275, 338, 373
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	320, 415, 589
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	9, 501
BspMI	ACCTGC	2 cut(s)	152, 514
BspPI	GGATC	2 cut(s)	328, 584
BsrDI	GCAATG	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	3 cut(s)	320, 415, 589
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	61, 285
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 556
BstKTI	GATC	3 cut(s)	323, 418, 592
BstMAI	GTCTC	4 cut(s)	221, 275, 338, 373
BstMBI	GATC	3 cut(s)	320, 415, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	499, 631
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	55
BveI	ACCTGC	2 cut(s)	152, 514
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	29, 556
Cfr13I	GGNCC	1 cut(s)	459
CviAII	CATG	2 cut(s)	275, 413
DdeI	CTNAG	2 cut(s)	61, 285
DpnI	GATC	3 cut(s)	322, 417, 591
DpnII	GATC	3 cut(s)	320, 415, 589
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	459
EcoRI	GAATTC	2 cut(s)	358, 532
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	278, 416
FaiI	YATR	8 cut(s)	237, 247, 249, 262, 276, 414, 449, 509
FalI	AAGNNNNNCTT	8 cut(s)	94, 126, 309, 341, 335, 367, 470, 502
FatI	CATG	2 cut(s)	274, 412
Fnu4HI	GCNGC	1 cut(s)	557
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	2 cut(s)	95, 185
GlaI	GCGC	2 cut(s)	28, 555
GluI	GCNGC	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	29, 556
Hin1II	CATG	2 cut(s)	278, 416
Hin6I	GCGC	2 cut(s)	27, 554
HinP1I	GCGC	2 cut(s)	27, 554
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	13, 596, 617
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	3 cut(s)	12, 18, 499
Hpy188III	TCNNGA	5 cut(s)	352, 413, 475, 584, 593
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	161, 213, 523, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	499, 631
HpyF3I	CTNAG	2 cut(s)	61, 285
Hsp92II	CATG	2 cut(s)	278, 416
HspAI	GCGC	2 cut(s)	27, 554
Kzo9I	GATC	3 cut(s)	320, 415, 589
LmnI	GCTCC	3 cut(s)	13, 432, 499
Lsp1109I	GCAGC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	95, 185
MaeIII	GTNAC	2 cut(s)	169, 310
MalI	GATC	3 cut(s)	322, 417, 591
MboI	GATC	3 cut(s)	320, 415, 589
MboII	GAAGA	3 cut(s)	401, 478, 599
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	2 cut(s)	358, 532
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	199, 348, 434, 450, 591, 601
MseI	TTAA	2 cut(s)	113, 612
MspA1I	CMGCKG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	499, 631
NdeII	GATC	3 cut(s)	320, 415, 589
NlaIII	CATG	2 cut(s)	278, 416
NlaIV	GGNNCC	2 cut(s)	9, 501
PagI	TCATGA	1 cut(s)	412
PaqCI	CACCTGC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	596, 617
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	9, 501
PspPI	GGNCC	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	589
SaqAI	TTAA	2 cut(s)	113, 612
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	3 cut(s)	320, 415, 589
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	9 cut(s)	55, 87, 166, 291, 309, 483, 495, 528, 612
SinI	GGWCC	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	302, 352, 363
SmoI	CTYRAG	3 cut(s)	302, 352, 363
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	2 cut(s)	358, 532
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	2 cut(s)	95, 185
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	2 cut(s)	474, 599
TasI	AATT	2 cut(s)	358, 532
TfiI	GAWTC	2 cut(s)	596, 617
Tru1I	TTAA	2 cut(s)	113, 612
Tru9I	TTAA	2 cut(s)	113, 612
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	17, 401, 609
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	358, 532
XspI	CTAG	2 cut(s)	95, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.