pycom16g09630

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002839
Physical Location & Seq
Reverse (-)
6428335 .. 6430393
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09630.1

Sequence Viewer

Length: 417 bp
ATGGTTTGCCATCACCTTGACAAGGACATTCCAGAAGACGTAGCTTTTGCTGAATCAAGCATAAGGGCTGAAACAATTGCCGCAGAAGATATTTTGCACAATATGGGAGCAATTAGCATTGTATCGTCTGATTCACAGGCTATGGGTCGCATCGAAGAGGTTCTTATTACCTTCACCTATAACCCTCATAGTGGTAGCAGCTCCTGCAGCTACAACTCCCCTCCTAATCTCCCCCACCAGCTTCCCACCGCAAACACTTCAACTGAACCACATCTCTCCCCCCCCCCCCCCCCCCGCTCCTCCTCCTTTCTCTTCCCTCCCTCATTGGATCCAGATTTGTGGAGTATACCTTGGAGATTTAGAAGTCACCAATTAATTGAAAATCCAAACGGGAGCTTTCTCGATCGAATTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

139

Amino Acids

15.2

Weight (kDa)

4.99

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 346
AciI CCGC 3 cut(s) 81, 249, 295
AclWI GGATC 2 cut(s) 323, 336
AfiI CCNNNNNNNGG 2 cut(s) 22, 191
AgsI TTSAA 2 cut(s) 261, 380
AluBI AGCT 5 cut(s) 44, 201, 210, 241, 396
AluI AGCT 5 cut(s) 44, 201, 210, 241, 396
AlwI GGATC 2 cut(s) 323, 336
AlwNI CAGNNNCTG 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 198, 207
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AseI ATTAAT 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 159
AsuHPI GGTGA 3 cut(s) 5, 166, 359
BamHI GGATCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 210, 219
BccI CCATC 1 cut(s) 18
BcgI CGANNNNNNTGC 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 3 cut(s) 81, 199, 208
BlsI GCNGC 3 cut(s) 82, 200, 209
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 191
BseDI CCNNGG 1 cut(s) 350
BseLI CCNNNNNNNGG 2 cut(s) 22, 191
BseRI GAGGAG 2 cut(s) 289, 292
BseXI GCAGC 2 cut(s) 210, 219
Bsh1285I CGRYCG 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 22, 191
Bsp143I GATC 2 cut(s) 328, 403
BspACI CCGC 3 cut(s) 81, 249, 295
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 2 cut(s) 323, 336
BsrBI CCGCTC 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 328, 403
BssNAI GTATAC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 150, 317
BstAPI GCANNNNNTGC 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 20
BstKTI GATC 2 cut(s) 331, 406
BstMBI GATC 2 cut(s) 328, 403
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 204, 207
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 210, 219
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 347
CaiI CAGNNNCTG 1 cut(s) 204
CviJI RGCY 7 cut(s) 44, 68, 140, 201, 210, 241, 396
CviKI_1 RGCY 7 cut(s) 44, 68, 140, 201, 210, 241, 396
DpnI GATC 2 cut(s) 330, 405
DpnII GATC 2 cut(s) 328, 403
Eam1104I CTCTTC 2 cut(s) 150, 317
EarI CTCTTC 2 cut(s) 150, 317
Eco130I CCWWGG 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaiI YATR 7 cut(s) 62, 104, 143, 180, 189, 347, 415
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FauI CCCGC 1 cut(s) 302
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 81, 199, 208
Fsp4HI GCNGC 3 cut(s) 81, 199, 208
GluI GCNGC 3 cut(s) 81, 199, 208
HinfI GANTC 2 cut(s) 53, 131
HphI GGTGA 3 cut(s) 5, 166, 359
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 32, 332, 401
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 97, 207, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 207
HpySE526I ACGT 1 cut(s) 39
Kzo9I GATC 2 cut(s) 328, 403
LmnI GCTCC 4 cut(s) 107, 206, 302, 393
LpnPI CCDG 5 cut(s) 45, 122, 217, 251, 345
Lsp1109I GCAGC 2 cut(s) 210, 219
LweI GCATC 1 cut(s) 159
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 365
MalI GATC 2 cut(s) 330, 405
MbiI CCGCTC 1 cut(s) 297
MboI GATC 2 cut(s) 328, 403
MboII GAAGA 4 cut(s) 47, 98, 167, 304
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 328
MluCI AATT 5 cut(s) 75, 111, 371, 375, 408
MnlI CCTC 7 cut(s) 151, 195, 231, 310, 313, 327, 331
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 1 cut(s) 374
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 204, 207
NdeII GATC 2 cut(s) 328, 403
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 53, 131
PkrI GCNGC 3 cut(s) 82, 200, 209
Ple19I CGATCG 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 330
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 328
PvuI CGATCG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 3 cut(s) 81, 199, 208
Sau3AI GATC 2 cut(s) 328, 403
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 205
Sse9I AATT 5 cut(s) 75, 111, 371, 375, 408
SsiI CCGC 3 cut(s) 81, 249, 295
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 153, 402, 406
TasI AATT 5 cut(s) 75, 111, 371, 375, 408
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 53, 131
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 198, 207
Tsp45I GTSAC 1 cut(s) 365
VspI ATTAAT 1 cut(s) 374
XagI CCTNNNNNAGG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.