Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Reverse (-)

8010356 .. 8010771

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1113700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGGTTTTATTTTGGAGTTCGTTCTAAATGGCGATAAATCTGTGGCGGAATTGATGGACATTGGGAGGCAACTGTTGGGTAGGAAACAAGTTCTTCCCGGTGTTCAATATCTTTTGGATATGGTGCAGGTATTATGCTCATTGAGGTTGTTTGCATTTGCTTCGAAAAGCCTTAAACATAACGATTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009039 GO:0016787 GO:0016810 GO:0016811

KEGG Pathways

Metabolic & Signaling

ko00220 ko00230 ko00791 ko01100 ko01120 map00220 map00230 map00791 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1 Urease_alpha Urease_beta Urease_gamma

Protein Analysis

65

Amino Acids

7.17

Weight (kDa)

7.73

Isoelectric Point (pI)

20.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Urease_gamma	PF00547	4 - 44	1.5e-08	Urease, gamma subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BcnI	CCSGG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	99
Bsp119I	TTCGAA	1 cut(s)	164
BspACI	CCGC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	118
CviJI	RGCY	1 cut(s)	171
CviKI_1	RGCY	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	62
FaiI	YATR	3 cut(s)	122, 136, 180
Fnu4HI	GCNGC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HapII	CCGG	1 cut(s)	99
HpaII	CCGG	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	127, 155
LpnPI	CCDG	2 cut(s)	112, 113
Lsp1109I	GCAGC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	2 cut(s)	60, 138
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	99
NciI	CCSGG	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	2 cut(s)	132, 149
SfuI	TTCGAA	1 cut(s)	164
SgeI	CNNG	4 cut(s)	101, 110, 111, 140
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.