pycom16g09640
ERF Family

belongs to the metallo- dependent hydrolases superfamily. Urease alpha subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
6435966 .. 6436445
480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09640.2

Sequence Viewer

Length: 360 bp
ATGCCCACTTTCAATGATAAACCTGTTGCTACCATAATACCATTTTATAAATGTGAAATGATGGATAAAGGGAACACTGCCAAACCTGAAGGGCTACACGATATAGTAAGGGCTGGGGCAATGGGACTGAAGCTGCAAAAGGACTGGGGAAGCACTCCTGCTGCAATCGACAATTGTTTGGCTGTTGGAGATCAATATGACGTCCAGTTTCATCTTCAAATATCAATTCTGATCTTGATAGTTAACATCCATACAGACACCTTGAATGGGTCTGGATTTGTAGAGGATACAATTGCTGCATTTAAAGGAAGAACTATCCATACTTACTACAGGTATAAATCACATTCTCGGTCTGTTTGA

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

6.95

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AatII GACGTC 1 cut(s) 204
AcuI CTGAAG 2 cut(s) 108, 149
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 3 cut(s) 13, 218, 265
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
ApeKI GCWGC 3 cut(s) 133, 161, 296
BbvI GCAGC 3 cut(s) 120, 148, 283
BccI CCATC 1 cut(s) 55
BciVI GTATCC 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 3 cut(s) 134, 162, 297
BlsI GCNGC 3 cut(s) 135, 163, 298
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 149, 205
Bse3DI GCAATG 1 cut(s) 126
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 149, 205
BseXI GCAGC 3 cut(s) 120, 148, 283
BseYI CCCAGC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 190, 231
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 2 cut(s) 149, 205
BssMI GATC 2 cut(s) 190, 231
BssNI GRCGYC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 2 cut(s) 193, 234
BstMBI GATC 2 cut(s) 190, 231
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 120, 148, 283
BsuI GTATCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CviJI RGCY 4 cut(s) 94, 113, 133, 182
CviKI_1 RGCY 4 cut(s) 94, 113, 133, 182
DpnI GATC 2 cut(s) 192, 233
DpnII GATC 2 cut(s) 190, 231
DraI TTTAAA 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 108, 149
FaiI YATR 7 cut(s) 35, 48, 104, 198, 252, 321, 336
FaqI GGGAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 134, 162, 297
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 134, 162, 297
GluI GCNGC 3 cut(s) 134, 162, 297
GsaI CCCAGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HpaI GTTAAC 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 235, 273
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 136, 164, 299
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 190, 231
LpnPI CCDG 8 cut(s) 36, 99, 99, 130, 171, 218, 258, 316
Lsp1109I GCAGC 3 cut(s) 120, 148, 283
MaeII ACGT 1 cut(s) 201
MalI GATC 2 cut(s) 192, 233
MboI GATC 2 cut(s) 190, 231
MboII GAAGA 2 cut(s) 206, 321
MfeI CAATTG 2 cut(s) 172, 291
MluCI AATT 3 cut(s) 172, 225, 291
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 1 cut(s) 277
MseI TTAA 2 cut(s) 243, 303
MunI CAATTG 2 cut(s) 172, 291
NdeII GATC 2 cut(s) 190, 231
PkrI GCNGC 3 cut(s) 135, 163, 298
PsiI TTATAA 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 113
PsrI GAACNNNNNNTAC 2 cut(s) 304, 336
SaqAI TTAA 2 cut(s) 243, 303
SatI GCNGC 3 cut(s) 134, 162, 297
Sau3AI GATC 2 cut(s) 190, 231
SetI ASST 6 cut(s) 25, 88, 135, 204, 263, 335
SfcI CTRYAG 1 cut(s) 328
Sse9I AATT 3 cut(s) 172, 225, 291
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 168
TaqII GACCGA 1 cut(s) 339
TasI AATT 3 cut(s) 172, 225, 291
Tru1I TTAA 2 cut(s) 243, 303
Tru9I TTAA 2 cut(s) 243, 303
TscAI CASTG 1 cut(s) 82
TseI GCWGC 3 cut(s) 133, 161, 296
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 82
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.