Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000176.1

Orthogroup ID

OG0002839

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1418

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 685 bp

atgctgatggtttgccatcaccttgacaaggacattccagaagatgtagcttttgctgaatcaaggataagagctgaaacaattgccgcagaagatatattgcatgatatgggggcaattagcatggtagcttctgattcacaggctatgggtcgcattggagaggtgataaccagaacttggcaaactgctgacaagatgaaatcacaaagagggtcaatagaacctagtggagccaacaatgacaatctccggatcaagagatacatagcaaagtacaccataaatccagcaatagcaaatggattttctaaatatgttggttccgttcaggtgggcaagttcgctgatcttgttctatggaagccatctttctttggggcaaaaccagaaatggtggtcaaaggtggtgcaattgcatgggctaatatgggtgatccaaacgcaagcatcccgacacctgaaccggtcatttcaagacctatgtttggtgcatttggcaaggctagtagtactcattccattgcctttgtcagcaaggcagctaaagaaaatggggttaaagccttgtatgacctgaacaagagagtggaagctgtgggcaatgttaggaagctccgcaaacgcgacatggagctcaatgacgccctgccaaatattaaagttgacccagagacatacacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009039 GO:0016787 GO:0016810 GO:0016811

KEGG Pathways

Metabolic & Signaling

ko00220 ko00230 ko00791 ko01100 ko01120 map00220 map00230 map00791 map01100 map01120

Pfam Domains

Protein Families

Amidohydro_1 Urease_alpha Urease_beta Urease_gamma

Protein Analysis

228

Amino Acids

24.91

Weight (kDa)

9.08

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67550
fragaria_vesca	FvH4_4g24160 FvH4_4g24160 FvH4_4g24160
malus_domestica	MD13G1114100.v1.1 MD13G1114500.v1.1 MD13G1114900.v1.1 MD13G1115100.v1.1 MD16G1113300.v1.1 MD16G1113700.v1.1
prunus_persica	Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1 Prupe.1G232300_v2.0.a1
pyrus_communis	pycom13g09950 pycom16g09630 pycom16g09640 pycom16g09650
rosa_chinensis	RchiOBHm_Chr1g0326041 RchiOBHm_Chr4g0430931
rosa_laevigata	RLG00000006937
rosa_multiflora	Rmu_sc0006022.1_g000001 Rmu_ssc0000176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223360 Rroxscaffold_5G00372620
rosa_rugosa	Rorug02G0437300 Rorug04G0247300 Rorug05G0134300
rosa_samantha	Rh2BG408000 Rh4AG303000 Rh4AG303900 Rh4BG311200 Rh4CG327500 Rh4DG307300 Rh7CG419200 Rh7CG419300 Rh7CG439900
rosa_wichuraiana	Rw4G026340 Rw7G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccII	CGCG	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	2 cut(s)	87, 619
AclWI	GGATC	2 cut(s)	263, 431
AcyI	GRCGYC	1 cut(s)	645
AfaI	GTAC	2 cut(s)	278, 514
AfiI	CCNNNNNNNGG	3 cut(s)	28, 180, 488
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	477
AluBI	AGCT	7 cut(s)	50, 74, 131, 545, 596, 616, 637
AluI	AGCT	7 cut(s)	50, 74, 131, 545, 596, 616, 637
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	263, 431
Aor13HI	TCCGGA	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	542
AsiGI	ACCGGT	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	11, 178, 446
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	24, 376
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	2 cut(s)	228, 507
BisI	GCNGC	2 cut(s)	87, 543
BlsI	GCNGC	2 cut(s)	88, 544
BmcAI	AGTACT	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	235, 325
BmsI	GCATC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	645
BsaWI	WCCGGW	2 cut(s)	252, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 180, 488
Bse118I	RCCGGY	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	522, 610
BseAI	TCCGGA	1 cut(s)	252
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	28, 180, 488
BseMI	GCAATG	2 cut(s)	522, 610
BseXI	GCAGC	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	627
BshTI	ACCGGT	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	2 cut(s)	253, 467
BslI	CCNNNNNNNGG	3 cut(s)	28, 180, 488
BsmAI	GTCTC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	255, 349, 436
BspACI	CCGC	2 cut(s)	87, 619
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	235, 325
BspPI	GGATC	2 cut(s)	263, 431
BsrDI	GCAATG	2 cut(s)	522, 610
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssMI	GATC	3 cut(s)	255, 349, 436
BssNI	GRCGYC	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	645
BstC8I	GCNNGC	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	3 cut(s)	258, 352, 439
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	3 cut(s)	255, 349, 436
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	466
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	277, 513
CspAI	ACCGGT	1 cut(s)	466
CviAII	CATG	4 cut(s)	104, 124, 420, 631
CviQI	GTAC	2 cut(s)	277, 513
DpnI	GATC	3 cut(s)	257, 351, 438
DpnII	GATC	3 cut(s)	255, 349, 436
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	639
FaeI	CATG	4 cut(s)	107, 127, 423, 634
FatI	CATG	4 cut(s)	103, 123, 419, 630
Fnu4HI	GCNGC	2 cut(s)	87, 543
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	87, 543
FspBI	CTAG	2 cut(s)	228, 507
GluI	GCNGC	2 cut(s)	87, 543
HapII	CCGG	2 cut(s)	253, 467
HgaI	GACGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	4 cut(s)	107, 127, 423, 634
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	2 cut(s)	59, 137
HpaII	CCGG	2 cut(s)	253, 467
HphI	GGTGA	3 cut(s)	11, 178, 446
Hpy166II	GTNNAC	2 cut(s)	279, 667
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	5 cut(s)	38, 253, 259, 454, 477
Hpy8I	GTNNAC	2 cut(s)	279, 667
HpyCH4V	TGCA	4 cut(s)	103, 413, 419, 494
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	107, 127, 423, 634
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	255, 349, 436
LmnI	GCTCC	3 cut(s)	233, 621, 634
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	2 cut(s)	228, 507
MalI	GATC	3 cut(s)	257, 351, 438
MboI	GATC	3 cut(s)	255, 349, 436
MboII	GAAGA	2 cut(s)	53, 104
MfeI	CAATTG	2 cut(s)	81, 414
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	3 cut(s)	81, 117, 414
MnlI	CCTC	2 cut(s)	157, 206
MroI	TCCGGA	1 cut(s)	252
MseI	TTAA	2 cut(s)	561, 660
MspI	CCGG	2 cut(s)	253, 467
MunI	CAATTG	2 cut(s)	81, 414
MvnI	CGCG	1 cut(s)	627
NdeII	GATC	3 cut(s)	255, 349, 436
NlaIII	CATG	4 cut(s)	107, 127, 423, 634
NlaIV	GGNNCC	2 cut(s)	235, 325
PfeI	GAWTC	2 cut(s)	59, 137
PflMI	CCANNNNNTGG	1 cut(s)	180
PinAI	ACCGGT	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	88, 544
Psp124BI	GAGCTC	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	235, 325
RsaI	GTAC	2 cut(s)	278, 514
RsaNI	GTAC	2 cut(s)	277, 513
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	561, 660
SatI	GCNGC	2 cut(s)	87, 543
Sau3AI	GATC	3 cut(s)	255, 349, 436
ScaI	AGTACT	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	1 cut(s)	459
Sse9I	AATT	3 cut(s)	81, 117, 414
SsiI	CCGC	2 cut(s)	87, 619
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	228, 507
SstI	GAGCTC	1 cut(s)	639
TasI	AATT	3 cut(s)	81, 117, 414
TatI	WGTACW	2 cut(s)	276, 512
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	59, 137
Tru1I	TTAA	2 cut(s)	561, 660
Tru9I	TTAA	2 cut(s)	561, 660
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	228, 507
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.