Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

25570733 .. 25574105

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1161300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACTCACAAGTTCATGAAACCGACACAAAAGTACGATCTCAGCTCGCTTCGACGTCTCGGCTCGCTTCGGCGTCTCGGCTGTGGCGGCGCGCCGCTGAGCAAGGAGGTTGTTGACAGATTTTGTGAGAGATTTACCGGTGTGGAAATTGGACAGGGGGGTACGAGAATGATTGACTCTGAGGAATGTAGCCGTCGTGCTTCTGTGGGCCGCCTAGCCGAGAATATGAAAACCAAGATTGTTGACCCTGAAACCGGAGAGGCTTTGCCTCCTGGCAAGAGGGGTGAGCTATGGCTGCGAGGTCCAACAATCATGAAAGGTTATGTTGGAGATGACAAGGCAACTGCTGAGACCTTGGATGAAGACGGGTGGTTGAAGAGCGGTGATCTTTGTTACTTCGATGACGAGGGTTTCCTCTACATTGTTGACAGGTTAAAGGAATTGATAAAGTACAAGGCATATCAGGTACCCCCAGCTGAGTTGGAACATATACTTCAGTCCCATCCCGACGTTGTGGATGCTGCTGTGATTCCTTATCCGGATGAAGACGCGTGGCAGATTCCCATGGCCTATGTGGTTAGAAAGCCCGGAAGCAATATCACTGAGGGTCAAGTTATGGATTTCGTTGCAAAGCAAGTTGCTCCGTACAAGAAGATACGACGTGTAGCATTTATCAACTCCATTCCAAAATCTCCATCAGGAAAGATCTTGAGGAGGGAGCTAGTAACTCACGCTTTATCCACTGGTTCATCAAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

254

Amino Acids

28.26

Weight (kDa)

8.55

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	18 - 108	5.1e-19	AMP-binding enzyme
AMP-binding_C	PF13193	160 - 235	9.9e-19	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
Acc65I	GGTACC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	381
AccII	CGCG	2 cut(s)	92, 551
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	4 cut(s)	87, 95, 211, 381
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	2 cut(s)	55, 73
AfaI	GTAC	5 cut(s)	35, 163, 452, 468, 647
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflIII	ACRYGT	2 cut(s)	549, 661
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	376
AjiI	CACGTC	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	45, 289, 476, 721
AluI	AGCT	4 cut(s)	45, 289, 476, 721
Alw26I	GTCTC	3 cut(s)	62, 80, 344
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	208, 567
ApeKI	GCWGC	2 cut(s)	295, 521
AscI	GGCGCGCC	1 cut(s)	90
AsiGI	ACCGGT	1 cut(s)	137
Asp718I	GGTACC	1 cut(s)	466
AspLEI	GCGC	2 cut(s)	92, 94
AspS9I	GGNCC	2 cut(s)	208, 302
AsuC2I	CCSGG	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	296, 395
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	369, 552
BbvI	GCAGC	2 cut(s)	282, 508
BccI	CCATC	2 cut(s)	510, 703
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	62, 80, 344
BfaI	CTAG	2 cut(s)	215, 722
BglII	AGATCT	1 cut(s)	705
BisI	GCNGC	5 cut(s)	88, 95, 211, 296, 522
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	5 cut(s)	89, 96, 212, 297, 523
Bme1390I	CCNGG	2 cut(s)	273, 588
Bme18I	GGWCC	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	208, 302
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	273, 588
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	369, 552
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	588
BsaHI	GRCGYC	2 cut(s)	55, 73
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	354, 564
BsaWI	WCCGGW	3 cut(s)	137, 254, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	748
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	354, 564
BseGI	GGATG	4 cut(s)	364, 502, 523, 547
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	6 cut(s)	55, 89, 171, 339, 468, 594
BseNI	ACTGG	1 cut(s)	748
BsePI	GCGCGC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	727
BseXI	GCAGC	2 cut(s)	282, 508
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	2 cut(s)	92, 551
BshFI	GGCC	2 cut(s)	210, 569
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	138, 255, 539, 588
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	3 cut(s)	62, 80, 344
BsmBI	CGTCTC	2 cut(s)	62, 80
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	210, 569
Bso31I	GGTCTC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	37, 385, 705
Bsp1720I	GCTNAGC	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	4 cut(s)	87, 95, 211, 381
BspANI	GGCC	2 cut(s)	210, 569
BspCNI	CTCAG	6 cut(s)	54, 90, 172, 340, 469, 595
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	2 cut(s)	92, 551
BspHI	TCATGA	2 cut(s)	15, 312
BspLI	GGNNCC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	748
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	354, 564
BssHII	GCGCGC	1 cut(s)	90
BssMI	GATC	3 cut(s)	37, 385, 705
BssNI	GRCGYC	2 cut(s)	55, 73
BssT1I	CCWWGG	2 cut(s)	354, 564
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	55, 73
BstC8I	GCNNGC	3 cut(s)	47, 65, 92
BstDEI	CTNAG	6 cut(s)	41, 98, 180, 348, 477, 603
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	4 cut(s)	364, 502, 523, 547
BstFNI	CGCG	2 cut(s)	92, 551
BstHHI	GCGC	2 cut(s)	92, 94
BstKTI	GATC	3 cut(s)	40, 388, 708
BstMAI	GTCTC	3 cut(s)	62, 80, 344
BstMBI	GATC	3 cut(s)	37, 385, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 295
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	271, 586
BstUI	CGCG	2 cut(s)	92, 551
BstV1I	GCAGC	2 cut(s)	282, 508
BstV2I	GAAGAC	2 cut(s)	369, 552
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	210, 569
BtgI	CCRYGG	1 cut(s)	564
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	4 cut(s)	364, 502, 523, 547
BtsIMutI	CAGTG	2 cut(s)	600, 741
Cac8I	GCNNGC	3 cut(s)	47, 65, 92
CciI	TCATGA	2 cut(s)	15, 312
CfoI	GCGC	2 cut(s)	92, 94
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	208, 302
CseI	GACGC	2 cut(s)	62, 557
Csp6I	GTAC	5 cut(s)	34, 162, 451, 467, 646
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	3 cut(s)	16, 313, 565
CviQI	GTAC	5 cut(s)	34, 162, 451, 467, 646
DdeI	CTNAG	6 cut(s)	41, 98, 180, 348, 477, 603
DpnI	GATC	3 cut(s)	39, 387, 707
DpnII	GATC	3 cut(s)	37, 385, 705
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	2 cut(s)	354, 564
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	354, 564
ErhI	CCWWGG	2 cut(s)	354, 564
Esp3I	CGTCTC	2 cut(s)	62, 80
FaeI	CATG	3 cut(s)	19, 316, 568
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	15, 312, 564
Fnu4HI	GCNGC	5 cut(s)	88, 95, 211, 296, 522
FokI	GGATG	4 cut(s)	371, 489, 530, 554
Fsp4HI	GCNGC	5 cut(s)	88, 95, 211, 296, 522
FspBI	CTAG	2 cut(s)	215, 722
GlaI	GCGC	2 cut(s)	91, 93
GluI	GCNGC	5 cut(s)	88, 95, 211, 296, 522
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	210, 569
HapII	CCGG	4 cut(s)	138, 255, 539, 588
HgaI	GACGC	2 cut(s)	62, 557
HhaI	GCGC	2 cut(s)	92, 94
Hin1I	GRCGYC	2 cut(s)	55, 73
Hin1II	CATG	3 cut(s)	19, 316, 568
Hin6I	GCGC	2 cut(s)	90, 92
HinP1I	GCGC	2 cut(s)	90, 92
HincII	GTYRAC	3 cut(s)	115, 244, 427
HindII	GTYRAC	3 cut(s)	115, 244, 427
HinfI	GANTC	4 cut(s)	4, 176, 529, 559
HpaII	CCGG	4 cut(s)	138, 255, 539, 588
HphI	GGTGA	2 cut(s)	296, 395
Hpy166II	GTNNAC	3 cut(s)	115, 244, 427
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	6 cut(s)	16, 313, 506, 539, 699, 709
Hpy8I	GTNNAC	3 cut(s)	115, 244, 427
Hpy99I	CGWCG	4 cut(s)	57, 198, 512, 663
HpyCH4IV	ACGT	3 cut(s)	55, 510, 661
HpyCH4V	TGCA	1 cut(s)	629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 295
HpyF3I	CTNAG	6 cut(s)	41, 98, 180, 348, 477, 603
HpySE526I	ACGT	3 cut(s)	55, 510, 661
Hsp92I	GRCGYC	2 cut(s)	55, 73
Hsp92II	CATG	3 cut(s)	19, 316, 568
HspAI	GCGC	2 cut(s)	90, 92
Kpn2I	TCCGGA	1 cut(s)	538
KpnI	GGTACC	1 cut(s)	470
Kzo9I	GATC	3 cut(s)	37, 385, 705
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	2 cut(s)	646, 718
Lsp1109I	GCAGC	2 cut(s)	282, 508
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	215, 722
MaeII	ACGT	3 cut(s)	55, 510, 661
MaeIII	GTNAC	2 cut(s)	392, 724
MalI	GATC	3 cut(s)	39, 387, 707
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	3 cut(s)	37, 385, 705
MboII	GAAGA	4 cut(s)	374, 388, 557, 664
MflI	RGATCY	1 cut(s)	705
MluCI	AATT	3 cut(s)	147, 440, 755
MluI	ACGCGT	1 cut(s)	549
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	307, 329, 462
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	97, 476
MspI	CCGG	4 cut(s)	138, 255, 539, 588
MspR9I	CCNGG	2 cut(s)	273, 588
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	92, 551
MwoI	GCNNNNNNNGC	2 cut(s)	87, 295
NciI	CCSGG	1 cut(s)	588
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	37, 385, 705
NlaIII	CATG	3 cut(s)	19, 316, 568
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	3 cut(s)	39, 57, 244
PagI	TCATGA	2 cut(s)	15, 312
PalAI	GGCGCGCC	1 cut(s)	90
PauI	GCGCGC	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	529, 559
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	89, 96, 212, 297, 523
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	208, 302
PsuI	RGATCY	1 cut(s)	705
PteI	GCGCGC	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	5 cut(s)	35, 163, 452, 468, 647
RsaNI	GTAC	5 cut(s)	34, 162, 451, 467, 646
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	5 cut(s)	88, 95, 211, 296, 522
Sau3AI	GATC	3 cut(s)	37, 385, 705
Sau96I	GGNCC	2 cut(s)	208, 302
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	273, 588
SfaNI	GCATC	1 cut(s)	508
SgsI	GGCGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	3 cut(s)	147, 440, 755
SsiI	CCGC	4 cut(s)	87, 95, 211, 381
SspMI	CTAG	2 cut(s)	215, 722
StyD4I	CCNGG	2 cut(s)	271, 586
StyI	CCWWGG	2 cut(s)	354, 564
TaiI	ACGT	3 cut(s)	58, 513, 664
TaqI	TCGA	2 cut(s)	52, 399
TasI	AATT	3 cut(s)	147, 440, 755
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	3 cut(s)	90, 97, 213
TfiI	GAWTC	2 cut(s)	529, 559
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	607, 748
TseI	GCWGC	2 cut(s)	295, 521
TspDTI	ATGAA	7 cut(s)	4, 32, 242, 329, 375, 558, 738
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	2 cut(s)	607, 748
VpaK11BI	GGWCC	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XspI	CTAG	2 cut(s)	215, 722
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.