Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

58061505 .. 58067893

Gene Structure 6389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGCCGAACCTCACCCACCCGAAGCTCGGCGCATGCCGCGAGTTGACCGACGCAGGCATGCTAGCGTCCGCGAAGAACGCAAGGTTTGAAGATGCTCTCATGTGGATCTGCACCTTCGAAGTCAAGGGAATGAACGCCGTGCCGGAAAATTGCTCGGTGTTGGAAGAGTTATCGGTGAAGCGGCTCGTGGTTTTGGGCCGAGCAATCGTCGGTGTCTTCATCCCTAGTCGATCCGATCCGGTGCCCGAGCAATTTCTGGACGTCTCCATCTGTCCCTTTGTCTTATTCTCTCATAAAAACTCGATAACAACAACTGACAATCTGACTTCTACTGCTACTATCACCACAATCAGCTCAAACCTGCCTGTCTGTTCCTTCCACCTCCAGTACTTCCACTCTATCATTCAACAATGGCCGAGCCAACAGCGAACCTCCCCCTCCGATCAACCCCAAGTCAGGCTTCTGCTCCCAAACCAAAACCTTCCACTCCCTCCGCCCCATAGTCCCTCTCCCGCCTCTCTCCCAGCCCCTCTCCCTCGCCCACTACACCATCTCCCTCCTCCAATCCTCCGCCAGTACTCCTCCCTCCACCCCTGTCCTCATCGACGCCTCCTCCGCCCGCCACCTCTCCTACTCCCACTTCCTCTCCCAGTTCCACTCCCTCACTCTCTCCCTCTCCCCCTCCTCTCCAAATCCCAAGTCGCTTACATCCTCTCCCCTCCTTCCCTCCACGTCCCCGTCCTCTACTTCTCCCTCCTCGCCTTAGGCGTCGTCGTCTCCCCCGCCAACCCCCTCAGCTCCCTCGACGAGATCGCCTACCAGCTCCGACTCACCAACCCCGCCCTCGCCTTCGCCACCTCAGCCACCGCTCACAAGCTCCCCAAGGGATTCAAAACCATCCTCCTCGACTCCCCCGAGTTCTACTCCATGCTCGAACCCGGCATCCGACCCGCACCACCCAGTAACCCGGTCGAGGTTCTCCAGACCGACACGGCCGCCATTCTGTACTCGTCCGGCACCACGGGCCGGGTCAAAGGCGTGGTTCTGTCTCACCGGAACTTCATAGCCCTGATCGCCGGGATGCACGCGCTCCGGATGGAACCCGACCCGGCCGAGCCGGTGGTCCATCCGGTGTCTATGTTCACGCTGCCGCTGTTCCACGTGTTCGGGTTCTTCATGCTGATTCGGGCCGTTTCCTCCGGCGAGACTCTGGTTCTGACGGAGCGGTTCGATTTCGAAGGGATGTTGAAGGCCGTGGAGAGGTTCAAGGTGACGTACATGCCGGTGTCGCCGCCGCTGATTGTGGCTCTGACCAAGTCGGAGCTGACTAAGAAATACGACCTCAGCTCGCTCATGCTTCTCGGCAGCGGCGGCGCTCCGCTCGGCAAAGATGTAGCTGAGAGGTTCATTCAGAAATTTCCTAATGTGGAACTGGTGCAGGGATATGGTTTGACTGAATCTGGAGGAGGGGCTTCGAGAACGGCAGATGCTGAAGAGGTAAAGCAGTATGGTTCTGTAGGCCGCTTGGCTGAAAATATGGAAGCCAAGATCGTTGACCCAGAAACTGGAGAGGCCTTGCCCCCTGGCCAGAGGGGCGAGCTGTGGTTGCGAGGTCCTACAATAATGAAAGGTTATGTAGGAGATGACAAGGCAACTGCTGAGACCTTGGATAAAGACGGCTGGTTAAAGACTGGTGATCTTTGTTATTTTGACGACGAGGGGTTCTTGTACATTGTGGACAGGTTAAAGGAATTGATAAAGTACAAGGCTTATCAGGTACCCCCAGCTGAGTTGGAACATATACTTCAATCACATCCTGACATTGCTGATGTTGCTGTGATTCCATACCCTGATGAAGAATCAGGGCAGATTCCCATGGCCTATGTTGTTAGAAAACCAGGAAGCAATATCACCGAGGCTATAGTAATGGATTTTGTTGCAAAACAAGTTGCACCATACAAGAAGATTCGGCGTGTATCATTCATCAACTCTATTCCAAAATCTCCAGCAGGGAAGATTATGAGAAGGGAGCTAGTTACCCTTGCGCTATCTAGTGGCTCATCTAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

690

Amino Acids

75.57

Weight (kDa)

7.29

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	231 - 545	2.2e-73	AMP-binding enzyme
AMP-binding_C	PF13193	597 - 672	3.5e-18	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	369
Acc65I	GGTACC	1 cut(s)	1777
AccB1I	GGYRCC	3 cut(s)	241, 1016, 1777
AccB7I	CCANNNNNTGG	1 cut(s)	1565
AccBSI	CCGCTC	3 cut(s)	869, 1225, 1381
AccII	CGCG	3 cut(s)	39, 71, 1088
AccIII	TCCGGA	1 cut(s)	1092
AclWI	GGATC	3 cut(s)	113, 225, 230
AcoI	YGGCCR	4 cut(s)	413, 993, 1110, 1585
AcsI	RAATTY	1 cut(s)	1415
AcuI	CTGAAG	1 cut(s)	1512
AcvI	CACGTG	1 cut(s)	1162
AcyI	GRCGYC	3 cut(s)	261, 607, 768
AfaI	GTAC	7 cut(s)	389, 578, 1007, 1277, 1730, 1763, 1779
AfiI	CCNNNNNNNGG	6 cut(s)	26, 456, 973, 1026, 1260, 1565
AflIII	ACRYGT	1 cut(s)	1161
AgsI	TTSAA	6 cut(s)	89, 407, 892, 1249, 1267, 1808
AjiI	CACGTC	1 cut(s)	733
AjnI	CCWGG	2 cut(s)	1582, 1897
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AloI	GAACNNNNNNTCC	2 cut(s)	927, 959
Alw26I	GTCTC	5 cut(s)	268, 781, 1053, 1199, 1655
AlwI	GGATC	3 cut(s)	113, 225, 230
AlwNI	CAGNNNCTG	2 cut(s)	1490, 1565
Ama87I	CYCGRG	2 cut(s)	245, 914
Aor13HI	TCCGGA	1 cut(s)	1092
ApeKI	GCWGC	2 cut(s)	1147, 1365
ApoI	RAATTY	1 cut(s)	1415
ArsI	GACNNNNNNTTYG	2 cut(s)	684, 716
Asp718I	GGTACC	1 cut(s)	1777
AspLEI	GCGC	4 cut(s)	32, 1090, 1376, 2047
AspS9I	GGNCC	5 cut(s)	196, 1024, 1123, 1188, 1613
AsuC2I	CCSGG	5 cut(s)	939, 968, 1028, 1078, 1109
AsuHPI	GGTGA	8 cut(s)	4, 187, 334, 823, 1043, 1282, 1706, 1903
AsuII	TTCGAA	2 cut(s)	117, 1236
AsuNHI	GCTAGC	1 cut(s)	61
AvaI	CYCGRG	2 cut(s)	245, 914
AvaII	GGWCC	2 cut(s)	1123, 1613
AxyI	CCTNAGG	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	1587
BanI	GGYRCC	3 cut(s)	241, 1016, 1777
BauI	CACGAG	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	1162
BbsI	GAAGAC	1 cut(s)	208
BbvCI	CCTCAGC	3 cut(s)	794, 859, 1343
BbvI	GCAGC	2 cut(s)	1134, 1377
BccI	CCATC	5 cut(s)	275, 558, 905, 1090, 1134
BceAI	ACGGC	6 cut(s)	122, 1008, 1175, 1238, 1497, 1693
BciT130I	CCWGG	2 cut(s)	1584, 1899
BcnI	CCSGG	5 cut(s)	939, 968, 1028, 1078, 1109
BcoDI	GTCTC	5 cut(s)	268, 781, 1053, 1199, 1655
BfaI	CTAG	4 cut(s)	62, 225, 2033, 2052
BfmI	CTRYAG	2 cut(s)	1515, 1920
BfoI	RGCGCY	1 cut(s)	1377
BfuAI	ACCTGC	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	1593
BmcAI	AGTACT	2 cut(s)	389, 578
Bme1390I	CCNGG	7 cut(s)	939, 968, 1028, 1078, 1109, 1584, 1899
Bme18I	GGWCC	2 cut(s)	1123, 1613
BmeT110I	CYCGRG	2 cut(s)	245, 914
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	5 cut(s)	196, 1024, 1123, 1188, 1613
BmiI	GGNNCC	4 cut(s)	243, 1018, 1101, 1779
BmrFI	CCNGG	7 cut(s)	939, 968, 1028, 1078, 1109, 1584, 1899
BmrI	ACTGGG	2 cut(s)	644, 954
BmsI	GCATC	4 cut(s)	82, 951, 1071, 1477
BmtI	GCTAGC	1 cut(s)	65
BmuI	ACTGGG	2 cut(s)	644, 954
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	5 cut(s)	368, 965, 1482, 1587, 1989
Bpu10I	CCTNAGC	3 cut(s)	794, 859, 1343
Bpu14I	TTCGAA	2 cut(s)	117, 1236
BpuMI	CCSGG	5 cut(s)	939, 968, 1028, 1078, 1109
BsaAI	YACGTR	1 cut(s)	1162
BsaHI	GRCGYC	3 cut(s)	261, 607, 768
BsaI	GGTCTC	1 cut(s)	1655
BsaJI	CCNNGG	7 cut(s)	882, 1020, 1254, 1582, 1665, 1875, 1914
BsaWI	WCCGGW	4 cut(s)	238, 1053, 1092, 1129
BsaXI	ACNNNNNCTCC	8 cut(s)	537, 567, 597, 627, 630, 660, 698, 728
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 456, 973, 1026, 1260, 1565
Bse118I	RCCGGY	2 cut(s)	1117, 1282
Bse1I	ACTGG	7 cut(s)	385, 574, 650, 960, 1437, 1570, 1696
Bse21I	CCTNAGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	1821
BseAI	TCCGGA	1 cut(s)	1092
BseBI	CCWGG	2 cut(s)	1584, 1899
BseDI	CCNNGG	7 cut(s)	882, 1020, 1254, 1582, 1665, 1875, 1914
BseGI	GGATG	9 cut(s)	219, 708, 897, 942, 1086, 1101, 1126, 1248, 1813
BseLI	CCNNNNNNNGG	6 cut(s)	26, 456, 973, 1026, 1260, 1565
BseMI	GCAATG	1 cut(s)	1821
BseMII	CTCAG	6 cut(s)	808, 873, 1357, 1389, 1650, 1779
BseNI	ACTGG	7 cut(s)	385, 574, 650, 960, 1437, 1570, 1696
BseRI	GAGGAG	7 cut(s)	549, 571, 602, 674, 746, 893, 1479
BseSI	GKGCMC	1 cut(s)	246
BseX3I	CGGCCG	2 cut(s)	993, 1110
BseXI	GCAGC	2 cut(s)	1134, 1377
BseYI	CCCAGC	2 cut(s)	523, 1783
BsgI	GTGCAG	2 cut(s)	94, 1457
Bsh1236I	CGCG	3 cut(s)	39, 71, 1088
Bsh1285I	CGRYCG	3 cut(s)	972, 996, 1113
BshNI	GGYRCC	3 cut(s)	241, 1016, 1777
BsiEI	CGRYCG	3 cut(s)	972, 996, 1113
BsiHKCI	CYCGRG	2 cut(s)	245, 914
BslFI	GGGAC	3 cut(s)	258, 489, 719
BslI	CCNNNNNNNGG	6 cut(s)	26, 456, 973, 1026, 1260, 1565
BsmAI	GTCTC	5 cut(s)	268, 781, 1053, 1199, 1655
BsmBI	CGTCTC	2 cut(s)	268, 781
BsmFI	GGGAC	3 cut(s)	258, 489, 719
Bso31I	GGTCTC	1 cut(s)	1655
BsoBI	CYCGRG	2 cut(s)	245, 914
Bsp119I	TTCGAA	2 cut(s)	117, 1236
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	1092
Bsp1407I	TGTACA	1 cut(s)	1728
Bsp143I	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
Bsp19I	CCATGG	1 cut(s)	1875
BspCNI	CTCAG	6 cut(s)	807, 872, 1356, 1390, 1651, 1780
BspEI	TCCGGA	1 cut(s)	1092
BspFNI	CGCG	3 cut(s)	39, 71, 1088
BspLI	GGNNCC	4 cut(s)	243, 1018, 1101, 1779
BspMI	ACCTGC	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	3 cut(s)	113, 225, 230
BspT104I	TTCGAA	2 cut(s)	117, 1236
BspT107I	GGYRCC	3 cut(s)	241, 1016, 1777
BspTNI	GGTCTC	1 cut(s)	1655
BsrBI	CCGCTC	3 cut(s)	869, 1225, 1381
BsrDI	GCAATG	1 cut(s)	1821
BsrFI	RCCGGY	2 cut(s)	1117, 1282
BsrGI	TGTACA	1 cut(s)	1728
BsrI	ACTGG	7 cut(s)	385, 574, 650, 960, 1437, 1570, 1696
BssAI	RCCGGY	2 cut(s)	1117, 1282
BssECI	CCNNGG	7 cut(s)	882, 1020, 1254, 1582, 1665, 1875, 1914
BssMI	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
BssNI	GRCGYC	3 cut(s)	261, 607, 768
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	3 cut(s)	882, 1665, 1875
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	1584, 1899
Bst6I	CTCTTC	2 cut(s)	159, 1488
BstACI	GRCGYC	3 cut(s)	261, 607, 768
BstAUI	TGTACA	1 cut(s)	1728
BstBAI	YACGTR	1 cut(s)	1162
BstBI	TTCGAA	2 cut(s)	117, 1236
BstC8I	GCNNGC	8 cut(s)	34, 55, 59, 63, 620, 1086, 1349, 1598
BstDEI	CTNAG	8 cut(s)	763, 794, 859, 1329, 1343, 1398, 1659, 1788
BstDSI	CCRYGG	3 cut(s)	1020, 1254, 1875
BstF5I	GGATG	9 cut(s)	219, 708, 897, 942, 1086, 1101, 1126, 1248, 1813
BstFNI	CGCG	3 cut(s)	39, 71, 1088
BstH2I	RGCGCY	1 cut(s)	1377
BstHHI	GCGC	4 cut(s)	32, 1090, 1376, 2047
BstKTI	GATC	8 cut(s)	108, 233, 238, 445, 813, 1074, 1551, 1699
BstMAI	GTCTC	5 cut(s)	268, 781, 1053, 1199, 1655
BstMBI	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
BstMCI	CGRYCG	3 cut(s)	972, 996, 1113
BstNI	CCWGG	2 cut(s)	1584, 1899
BstNSI	RCATGY	3 cut(s)	36, 61, 1282
BstSCI	CCNGG	7 cut(s)	937, 966, 1026, 1076, 1107, 1582, 1897
BstSFI	CTRYAG	2 cut(s)	1515, 1920
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	3 cut(s)	39, 71, 1088
BstV1I	GCAGC	2 cut(s)	1134, 1377
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	2 cut(s)	993, 1110
Bsu36I	CCTNAGG	1 cut(s)	763
BtgI	CCRYGG	3 cut(s)	1020, 1254, 1875
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	9 cut(s)	219, 708, 897, 942, 1086, 1101, 1126, 1248, 1813
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	8 cut(s)	34, 55, 59, 63, 620, 1086, 1349, 1598
CaiI	CAGNNNCTG	2 cut(s)	1490, 1565
CfoI	GCGC	4 cut(s)	32, 1090, 1376, 2047
Cfr10I	RCCGGY	2 cut(s)	1117, 1282
Cfr13I	GGNCC	5 cut(s)	196, 1024, 1123, 1188, 1613
CseI	GACGC	4 cut(s)	54, 59, 615, 757
Csp6I	GTAC	7 cut(s)	388, 577, 1006, 1276, 1729, 1762, 1778
CviAII	CATG	8 cut(s)	33, 58, 100, 928, 1177, 1279, 1354, 1876
CviQI	GTAC	7 cut(s)	388, 577, 1006, 1276, 1729, 1762, 1778
DdeI	CTNAG	8 cut(s)	763, 794, 859, 1329, 1343, 1398, 1659, 1788
DpnI	GATC	8 cut(s)	107, 232, 237, 444, 812, 1073, 1550, 1698
DpnII	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
EaeI	YGGCCR	4 cut(s)	413, 993, 1110, 1585
EagI	CGGCCG	2 cut(s)	993, 1110
Eam1104I	CTCTTC	2 cut(s)	159, 1488
EarI	CTCTTC	2 cut(s)	159, 1488
EciI	GGCGGA	3 cut(s)	483, 560, 605
EclXI	CGGCCG	2 cut(s)	993, 1110
Eco130I	CCWWGG	3 cut(s)	882, 1665, 1875
Eco147I	AGGCCT	1 cut(s)	1574
Eco31I	GGTCTC	1 cut(s)	1655
Eco47I	GGWCC	2 cut(s)	1123, 1613
Eco52I	CGGCCG	2 cut(s)	993, 1110
Eco57I	CTGAAG	1 cut(s)	1512
Eco72I	CACGTG	1 cut(s)	1162
Eco81I	CCTNAGG	1 cut(s)	763
Eco88I	CYCGRG	2 cut(s)	245, 914
EcoO109I	RGGNCCY	1 cut(s)	1613
EcoRII	CCWGG	2 cut(s)	1582, 1897
EcoT14I	CCWWGG	3 cut(s)	882, 1665, 1875
ErhI	CCWWGG	3 cut(s)	882, 1665, 1875
Esp3I	CGTCTC	2 cut(s)	268, 781
FaeI	CATG	8 cut(s)	36, 61, 103, 931, 1180, 1282, 1357, 1879
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	3 cut(s)	258, 489, 719
FatI	CATG	8 cut(s)	32, 57, 99, 927, 1176, 1278, 1353, 1875
FauI	CCCGC	5 cut(s)	520, 627, 790, 847, 958
FokI	GGATG	9 cut(s)	206, 695, 884, 929, 1093, 1108, 1113, 1255, 1800
FspBI	CTAG	4 cut(s)	62, 225, 2033, 2052
GlaI	GCGC	4 cut(s)	31, 1089, 1375, 2046
GsaI	CCCAGC	2 cut(s)	527, 1787
GsuI	CTGGAG	5 cut(s)	368, 965, 1482, 1587, 1989
HaeII	RGCGCY	1 cut(s)	1377
HgaI	GACGC	4 cut(s)	54, 59, 615, 757
HhaI	GCGC	4 cut(s)	32, 1090, 1376, 2047
Hin1I	GRCGYC	3 cut(s)	261, 607, 768
Hin1II	CATG	8 cut(s)	36, 61, 103, 931, 1180, 1282, 1357, 1879
Hin6I	GCGC	4 cut(s)	30, 1088, 1374, 2045
HinP1I	GCGC	4 cut(s)	30, 1088, 1374, 2045
HincII	GTYRAC	2 cut(s)	45, 1555
HindII	GTYRAC	2 cut(s)	45, 1555
HphI	GGTGA	8 cut(s)	4, 187, 334, 823, 1043, 1282, 1706, 1903
Hpy166II	GTNNAC	4 cut(s)	45, 1143, 1555, 1738
Hpy188I	TCNGA	9 cut(s)	235, 324, 442, 827, 947, 1218, 1311, 1321, 1413
Hpy188III	TCNNGA	6 cut(s)	257, 982, 1093, 1461, 1476, 1817
Hpy8I	GTNNAC	4 cut(s)	45, 1143, 1555, 1738
Hpy99I	CGWCG	7 cut(s)	53, 212, 609, 773, 776, 809, 1718
HpyAV	CCTTC	8 cut(s)	124, 385, 491, 732, 859, 1232, 1243, 2019
HpyCH4IV	ACGT	4 cut(s)	261, 732, 1161, 1274
HpyCH4V	TGCA	5 cut(s)	111, 1084, 1438, 1940, 1952
HpyF3I	CTNAG	8 cut(s)	763, 794, 859, 1329, 1343, 1398, 1659, 1788
HpySE526I	ACGT	4 cut(s)	261, 732, 1161, 1274
Hsp92I	GRCGYC	3 cut(s)	261, 607, 768
Hsp92II	CATG	8 cut(s)	36, 61, 103, 931, 1180, 1282, 1357, 1879
HspAI	GCGC	4 cut(s)	30, 1088, 1374, 2045
Kpn2I	TCCGGA	1 cut(s)	1092
KpnI	GGTACC	1 cut(s)	1781
Kzo9I	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
LmnI	GCTCC	9 cut(s)	471, 803, 828, 882, 1095, 1222, 1321, 1381, 2029
Lsp1109I	GCAGC	2 cut(s)	1134, 1377
LweI	GCATC	4 cut(s)	82, 951, 1071, 1477
MaeI	CTAG	4 cut(s)	62, 225, 2033, 2052
MaeII	ACGT	4 cut(s)	261, 732, 1161, 1274
MaeIII	GTNAC	3 cut(s)	962, 1270, 2035
MalI	GATC	8 cut(s)	107, 232, 237, 444, 812, 1073, 1550, 1698
MbiI	CCGCTC	3 cut(s)	869, 1225, 1381
MboI	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
MboII	GAAGA	9 cut(s)	85, 101, 176, 208, 1165, 1505, 1868, 1975, 2026
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	1587
MluCI	AATT	4 cut(s)	148, 251, 1415, 1751
MluNI	TGGCCA	1 cut(s)	1587
MlyI	GAGTC	3 cut(s)	822, 902, 1201
MmeI	TCCRAC	5 cut(s)	141, 850, 970, 1299, 1773
Mox20I	TGGCCA	1 cut(s)	1587
MroI	TCCGGA	1 cut(s)	1092
MscI	TGGCCA	1 cut(s)	1587
MseI	TTAA	2 cut(s)	1685, 1745
MslI	CAYNNNNRTG	1 cut(s)	1283
Msp20I	TGGCCA	1 cut(s)	1587
MspA1I	CMGCKG	4 cut(s)	1153, 1297, 1368, 1787
MspR9I	CCNGG	7 cut(s)	939, 968, 1028, 1078, 1109, 1584, 1899
MvaI	CCWGG	2 cut(s)	1584, 1899
MvnI	CGCG	3 cut(s)	39, 71, 1088
NciI	CCSGG	5 cut(s)	939, 968, 1028, 1078, 1109
NcoI	CCATGG	1 cut(s)	1875
NdeII	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	8 cut(s)	36, 61, 103, 931, 1180, 1282, 1357, 1879
NlaIV	GGNNCC	4 cut(s)	243, 1018, 1101, 1779
NmeAIII	GCCGAG	6 cut(s)	6, 224, 441, 1138, 1341, 1362
NmuCI	GTSAC	1 cut(s)	1270
NspI	RCATGY	3 cut(s)	36, 61, 1282
NspV	TTCGAA	2 cut(s)	117, 1236
PaeI	GCATGC	2 cut(s)	36, 61
PceI	AGGCCT	1 cut(s)	1574
PcsI	WCGNNNNNNNCGW	2 cut(s)	765, 912
PfeI	GAWTC	7 cut(s)	888, 1183, 1457, 1840, 1859, 1870, 1966
PflFI	GACNNNGTC	1 cut(s)	1315
PflMI	CCANNNNNTGG	1 cut(s)	1565
PleI	GAGTC	3 cut(s)	822, 902, 1201
PmaCI	CACGTG	1 cut(s)	1162
PmlI	CACGTG	1 cut(s)	1162
PpsI	GAGTC	3 cut(s)	822, 902, 1201
Ppu21I	YACGTR	1 cut(s)	1162
PpuMI	RGGWCCY	1 cut(s)	1613
Psp5II	RGGWCCY	1 cut(s)	1613
Psp6I	CCWGG	2 cut(s)	1582, 1897
PspCI	CACGTG	1 cut(s)	1162
PspFI	CCCAGC	2 cut(s)	523, 1783
PspGI	CCWGG	2 cut(s)	1582, 1897
PspN4I	GGNNCC	4 cut(s)	243, 1018, 1101, 1779
PspPI	GGNCC	5 cut(s)	196, 1024, 1123, 1188, 1613
PspPPI	RGGWCCY	1 cut(s)	1613
PstNI	CAGNNNCTG	2 cut(s)	1490, 1565
PsuI	RGATCY	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	1315
PvuII	CAGCTG	1 cut(s)	1787
RsaI	GTAC	7 cut(s)	389, 578, 1007, 1277, 1730, 1763, 1779
RsaNI	GTAC	7 cut(s)	388, 577, 1006, 1276, 1729, 1762, 1778
RseI	CAYNNNNRTG	1 cut(s)	1283
SaqAI	TTAA	2 cut(s)	1685, 1745
Sau3AI	GATC	8 cut(s)	105, 230, 235, 442, 810, 1071, 1548, 1696
Sau96I	GGNCC	5 cut(s)	196, 1024, 1123, 1188, 1613
ScaI	AGTACT	2 cut(s)	389, 578
SchI	GAGTC	3 cut(s)	822, 902, 1201
ScrFI	CCNGG	7 cut(s)	939, 968, 1028, 1078, 1109, 1584, 1899
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	82, 951, 1071, 1477
SfcI	CTRYAG	2 cut(s)	1515, 1920
SfuI	TTCGAA	2 cut(s)	117, 1236
SinI	GGWCC	2 cut(s)	1123, 1613
SmiMI	CAYNNNNRTG	1 cut(s)	1283
SphI	GCATGC	2 cut(s)	36, 61
Sse9I	AATT	4 cut(s)	148, 251, 1415, 1751
SseBI	AGGCCT	1 cut(s)	1574
SspMI	CTAG	4 cut(s)	62, 225, 2033, 2052
StuI	AGGCCT	1 cut(s)	1574
StyD4I	CCNGG	7 cut(s)	937, 966, 1026, 1076, 1107, 1582, 1897
StyI	CCWWGG	3 cut(s)	882, 1665, 1875
TaiI	ACGT	4 cut(s)	264, 735, 1164, 1277
TaqII	GACCGA	2 cut(s)	62, 1001
TasI	AATT	4 cut(s)	148, 251, 1415, 1751
TatI	WGTACW	5 cut(s)	387, 576, 1005, 1728, 1761
TauI	GCSGC	9 cut(s)	39, 184, 998, 1153, 1294, 1297, 1371, 1374, 1524
TfiI	GAWTC	7 cut(s)	888, 1183, 1457, 1840, 1859, 1870, 1966
Tru1I	TTAA	2 cut(s)	1685, 1745
Tru9I	TTAA	2 cut(s)	1685, 1745
TseFI	GTSAC	1 cut(s)	1270
TseI	GCWGC	2 cut(s)	1147, 1365
Tsp45I	GTSAC	1 cut(s)	1270
TspDTI	ATGAA	8 cut(s)	146, 208, 1051, 1165, 1396, 1640, 1869, 1972
TspGWI	ACGGA	1 cut(s)	1235
Tth111I	GACNNNGTC	1 cut(s)	1315
Van91I	CCANNNNNTGG	1 cut(s)	1565
VpaK11BI	GGWCC	2 cut(s)	1123, 1613
XapI	RAATTY	1 cut(s)	1415
XceI	RCATGY	3 cut(s)	36, 61, 1282
XspI	CTAG	4 cut(s)	62, 225, 2033, 2052
ZraI	GACGTC	1 cut(s)	262
ZrmI	AGTACT	2 cut(s)	389, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.