Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

54032381 .. 54035044

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGGCCGATCACAACACTACCAGCATTGATCCCAACAGCGGCTTCTGCTCAAAGACCAAAACATTCCAGAGTCTCAGGCCGAAAGCCCCGCTCCCCTCCGAAACGACGCCGCTTTCGATCACTCACTACATTTTCTCCCACCTCCAAGCCTCCCCTCCTCCGCCCTCCACCCCGGCTCTCCTCGACCCCGCCACGCGCCGCCACGTTCTCTACCCCCAGTTCACGCGCCGCGTCAAAACCTTAGCCGCCGCGCTAGAATCGCAGCTCAACCTCTCCAATGGCCACACCGCCTTCGTCATCTCCCCCAATTCTCTCGACCTCCCCATCCTCTACTTCTCTCTCTTTTCGCTCGGCGTAACCGTCTCTCCGTCAAACCCGGCCAGCACCACTCCCGAGATTTCCCGCCAAATCCACCTCAGCAGACCCGTCATCGCCTTCGCCACCTCCGCCACCGCTCACAAACTCCCCAACTCCCTCCAATACGGCGTCGTACTCCTCGACTCCCCGGAATTCCAGTCCATGATGACGTGTACTCCGGCGCCTGAGCTTCCACGGGTCCGCTTCAGCCAATCCCACACCGCCGCGGTCCTCTACTCGTCGGGGACCACCGGGGCCGTCAAAGGTGTGGAGTTGACCCACCGTAACTGGATTTCCGTGCTGGCGTCGGCGTTCGCGGTTCGGAATCCGACGGCTGCGGCGGCTCCGCCAGCTGTCATGCTCTGCGCGGTGCCGTTCTTCCACGTGTACGGCTTCGGCGTCTGCATGCGGGTGTTGGGGTTCGGCGAGACGCTGGCGTCGATTTCGGGGAGGTTTGATCTGAGAGAGACGCTGAGGGCAGTCGAGGAGTTCAGGATCAGCCACGTGTCGTGGGCCCCGCCGGTGGTGGTGGCTGTGGTGAAGCGCGGGAGCGAGATCGACGGCTACGATCTGAGCTCGCTGCAGGTCGTCGCCTGCGGCGGTGCTCCGCTTGCGAAGAGTGTCATCGATAAGCTGAAGAAACGCCTTCCTAACGTGCAAGTCGCACAGGGATATGGGCTGACAGAGACAACGGGTCGAGTGTTTGGCACGGTAGGCCCAAATGAGACCCGAGTAGAAGGAGCTACTGGAAAGCTGATGTCAAACTTTGAAGCCAAGATTGTTGACCCAGAGACCGGCCGTGCCTTGCCTCCTCTAATGACTGGAGAGCTTTGGCTTAGGGGACCAATTATAATGAAAGGTTACATTGGTGATGAAGAAGCAAATGCTACAAGTATGGACACTGAAGGATGGTTTAAAACTGGAGACCTTTGCTATATCGACAAAGAAGGTTACCTATTTTTCGTTGATCGGATCAAGGAACTGATCAAGTACAAAGGCTACCAGGTTGCCCCGGCAGAGTTGGAGCATCTGCTTCAATCCCATCCCGATATTGTTGATGCAGCTGTGGTTCCGTATCCTGACGAGGAAGCAGGTCAAGTACCAATGGCCTTTGTGGTCAGGCGCCTAGGAAGTGTCGTCGATGAATCGCAGGTGAAGGATTTTATTGCCAAACAGGTTGCACCGTATAAGAAAATACGACGAGTAGCATTCATCAATGAAGTACCAAAGAGTGCACAAGGTAAATTAATGAGGAAGGAATTAGTCAAACTTGCATTATCCAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

548

Amino Acids

59.65

Weight (kDa)

8.92

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	55 - 407	3.6e-70	AMP-binding enzyme
AMP-binding_C	PF13193	459 - 534	4.4e-17	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1208
AarI	CACCTGC	1 cut(s)	1498
AasI	GACNNNNNNGTC	1 cut(s)	793
Acc36I	ACCTGC	3 cut(s)	931, 1439, 1498
AccB1I	GGYRCC	3 cut(s)	538, 727, 1479
AccBSI	CCGCTC	2 cut(s)	91, 455
AccII	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
AclWI	GGATC	3 cut(s)	23, 860, 1337
AcoI	YGGCCR	4 cut(s)	3, 280, 378, 1153
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	3 cut(s)	547, 1013, 1281
AcvI	CACGTG	2 cut(s)	742, 862
AcyI	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
AfaI	GTAC	6 cut(s)	492, 532, 746, 1349, 1458, 1581
AfiI	CCNNNNNNNGG	3 cut(s)	38, 880, 1151
AflIII	ACRYGT	3 cut(s)	527, 741, 861
AgsI	TTSAA	2 cut(s)	1127, 1394
AhdI	GACNNNNNGTC	1 cut(s)	1050
AjiI	CACGTC	1 cut(s)	528
AjnI	CCWGG	1 cut(s)	1359
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	9 cut(s)	265, 547, 710, 933, 991, 1100, 1111, 1186, 1421
AluI	AGCT	9 cut(s)	265, 547, 710, 933, 991, 1100, 1111, 1186, 1421
Alw21I	GWGCWC	3 cut(s)	935, 964, 1594
Alw26I	GTCTC	8 cut(s)	77, 367, 779, 818, 1037, 1076, 1142, 1275
Alw44I	GTGCAC	1 cut(s)	1590
AlwI	GGATC	3 cut(s)	23, 860, 1337
Ama87I	CYCGRG	2 cut(s)	392, 1086
AoxI	GGCC	9 cut(s)	3, 77, 280, 378, 612, 870, 1072, 1153, 1464
ApaI	GGGCCC	1 cut(s)	874
ApaLI	GTGCAC	1 cut(s)	1590
ApeKI	GCWGC	4 cut(s)	262, 692, 937, 1418
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AseI	ATTAAT	1 cut(s)	1604
AspA2I	CCTAGG	1 cut(s)	1483
AspLEI	GCGC	7 cut(s)	198, 228, 253, 541, 725, 903, 1482
AspS9I	GGNCC	8 cut(s)	556, 586, 603, 612, 870, 871, 1073, 1199
AsuC2I	CCSGG	5 cut(s)	173, 377, 506, 610, 1370
AsuHPI	GGTGA	3 cut(s)	907, 1238, 1522
AvaI	CYCGRG	2 cut(s)	392, 1086
AvaII	GGWCC	4 cut(s)	556, 586, 603, 1199
AvrII	CCTAGG	1 cut(s)	1483
BaeGI	GKGCMC	2 cut(s)	874, 1594
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	3 cut(s)	538, 727, 1479
BanII	GRGCYC	2 cut(s)	874, 935
BbrPI	CACGTG	2 cut(s)	742, 862
Bbv12I	GWGCWC	3 cut(s)	935, 964, 1594
BbvCI	CCTCAGC	2 cut(s)	416, 830
BbvI	GCAGC	4 cut(s)	274, 679, 924, 1430
BccI	CCATC	3 cut(s)	332, 1260, 1407
BceAI	ACGGC	7 cut(s)	499, 599, 705, 715, 763, 934, 1140
BciT130I	CCWGG	1 cut(s)	1361
BciVI	GTATCC	1 cut(s)	1443
BclI	TGATCA	1 cut(s)	1341
BcnI	CCSGG	5 cut(s)	173, 377, 506, 610, 1370
BcoDI	GTCTC	8 cut(s)	77, 367, 779, 818, 1037, 1076, 1142, 1275
BfaI	CTAG	2 cut(s)	254, 1484
BfmI	CTRYAG	1 cut(s)	938
BfoI	RGCGCY	2 cut(s)	542, 1483
BfuAI	ACCTGC	3 cut(s)	931, 1439, 1498
BfuI	GTATCC	1 cut(s)	1443
BlnI	CCTAGG	1 cut(s)	1483
Bme1390I	CCNGG	6 cut(s)	173, 377, 506, 610, 1361, 1370
Bme18I	GGWCC	4 cut(s)	556, 586, 603, 1199
BmeRI	GACNNNNNGTC	1 cut(s)	1050
BmeT110I	CYCGRG	2 cut(s)	392, 1086
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	8 cut(s)	556, 586, 603, 612, 870, 871, 1073, 1199
BmrFI	CCNGG	6 cut(s)	173, 377, 506, 610, 1361, 1370
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	2 cut(s)	1393, 1405
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	1200, 1299
Bpu10I	CCTNAGC	5 cut(s)	241, 416, 543, 830, 1193
BpuMI	CCSGG	5 cut(s)	173, 377, 506, 610, 1370
Bsa29I	ATCGAT	1 cut(s)	984
BsaAI	YACGTR	2 cut(s)	742, 862
BsaHI	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
BsaI	GGTCTC	3 cut(s)	1076, 1142, 1275
BsaJI	CCNNGG	7 cut(s)	171, 504, 551, 582, 609, 1368, 1483
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 349, 379, 517, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 880, 1151
Bse118I	RCCGGY	2 cut(s)	877, 1151
Bse1I	ACTGG	6 cut(s)	217, 514, 650, 1108, 1183, 1282
BseBI	CCWGG	1 cut(s)	1361
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	7 cut(s)	171, 504, 551, 582, 609, 1368, 1483
BseGI	GGATG	3 cut(s)	324, 1271, 1399
BseLI	CCNNNNNNNGG	3 cut(s)	38, 880, 1151
BseMII	CTCAG	6 cut(s)	88, 430, 534, 809, 821, 920
BseNI	ACTGG	6 cut(s)	217, 514, 650, 1108, 1183, 1282
BseRI	GAGGAG	5 cut(s)	147, 170, 485, 857, 1158
BseSI	GKGCMC	2 cut(s)	874, 1594
BseX3I	CGGCCG	1 cut(s)	1153
BseXI	GCAGC	4 cut(s)	274, 679, 924, 1430
Bsh1236I	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
Bsh1285I	CGRYCG	1 cut(s)	1156
BshFI	GGCC	9 cut(s)	5, 79, 282, 380, 614, 872, 1074, 1155, 1466
BshNI	GGYRCC	3 cut(s)	538, 727, 1479
BshVI	ATCGAT	1 cut(s)	984
BsiEI	CGRYCG	1 cut(s)	1156
BsiHKAI	GWGCWC	3 cut(s)	935, 964, 1594
BsiHKCI	CYCGRG	2 cut(s)	392, 1086
BsiSI	CCGG	8 cut(s)	173, 377, 506, 536, 609, 878, 1152, 1370
BslFI	GGGAC	2 cut(s)	616, 1212
BslI	CCNNNNNNNGG	3 cut(s)	38, 880, 1151
BsmAI	GTCTC	8 cut(s)	77, 367, 779, 818, 1037, 1076, 1142, 1275
BsmBI	CGTCTC	3 cut(s)	367, 779, 818
BsmFI	GGGAC	2 cut(s)	616, 1212
BsmI	GAATGC	1 cut(s)	1565
BsnI	GGCC	9 cut(s)	5, 79, 282, 380, 614, 872, 1074, 1155, 1466
Bso31I	GGTCTC	3 cut(s)	1076, 1142, 1275
BsoBI	CYCGRG	2 cut(s)	392, 1086
Bsp120I	GGGCCC	1 cut(s)	870
Bsp1286I	GDGCHC	4 cut(s)	874, 935, 964, 1594
BspANI	GGCC	9 cut(s)	5, 79, 282, 380, 614, 872, 1074, 1155, 1466
BspCNI	CTCAG	6 cut(s)	87, 429, 535, 810, 822, 921
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
BspMAI	CTGCAG	1 cut(s)	942
BspMI	ACCTGC	3 cut(s)	931, 1439, 1498
BspPI	GGATC	3 cut(s)	23, 860, 1337
BspT107I	GGYRCC	3 cut(s)	538, 727, 1479
BspTNI	GGTCTC	3 cut(s)	1076, 1142, 1275
BsrBI	CCGCTC	2 cut(s)	91, 455
BsrFI	RCCGGY	2 cut(s)	877, 1151
BsrI	ACTGG	6 cut(s)	217, 514, 650, 1108, 1183, 1282
BssAI	RCCGGY	2 cut(s)	877, 1151
BssECI	CCNNGG	7 cut(s)	171, 504, 551, 582, 609, 1368, 1483
BssNI	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
BssT1I	CCWWGG	1 cut(s)	1483
Bst2UI	CCWGG	1 cut(s)	1361
Bst4CI	ACNGT	4 cut(s)	361, 641, 1069, 1542
Bst6I	CTCTTC	1 cut(s)	968
BstACI	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
BstBAI	YACGTR	2 cut(s)	742, 862
BstC8I	GCNNGC	8 cut(s)	382, 660, 708, 764, 792, 935, 952, 969
BstDEI	CTNAG	8 cut(s)	74, 241, 416, 543, 818, 830, 929, 1193
BstDSI	CCRYGG	2 cut(s)	551, 582
BstEII	GGTNACC	1 cut(s)	1307
BstF5I	GGATG	3 cut(s)	324, 1271, 1399
BstFNI	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
BstH2I	RGCGCY	2 cut(s)	542, 1483
BstHHI	GCGC	7 cut(s)	198, 228, 253, 541, 725, 903, 1482
BstMAI	GTCTC	8 cut(s)	77, 367, 779, 818, 1037, 1076, 1142, 1275
BstMCI	CGRYCG	1 cut(s)	1156
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 259, 446, 698, 707, 968, 1071
BstNI	CCWGG	1 cut(s)	1361
BstNSI	RCATGY	1 cut(s)	766
BstPI	GGTNACC	1 cut(s)	1307
BstSCI	CCNGG	6 cut(s)	171, 375, 504, 608, 1359, 1368
BstSFI	CTRYAG	1 cut(s)	938
BstSLI	GKGCMC	2 cut(s)	874, 1594
BstUI	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
BstV1I	GCAGC	4 cut(s)	274, 679, 924, 1430
BstZI	CGGCCG	1 cut(s)	1153
Bsu15I	ATCGAT	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	1443
BsuRI	GGCC	9 cut(s)	5, 79, 282, 380, 614, 872, 1074, 1155, 1466
BsuTUI	ATCGAT	1 cut(s)	984
BtgI	CCRYGG	2 cut(s)	551, 582
BtgZI	GCGATG	1 cut(s)	415
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	324, 1271, 1399
BtsIMutI	CAGTG	1 cut(s)	1257
BveI	ACCTGC	3 cut(s)	931, 1439, 1498
Cac8I	GCNNGC	8 cut(s)	382, 660, 708, 764, 792, 935, 952, 969
CfoI	GCGC	7 cut(s)	198, 228, 253, 541, 725, 903, 1482
Cfr10I	RCCGGY	2 cut(s)	877, 1151
Cfr13I	GGNCC	8 cut(s)	556, 586, 603, 612, 870, 871, 1073, 1199
Cfr42I	CCGCGG	1 cut(s)	585
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	8 cut(s)	115, 220, 475, 651, 745, 783, 796, 835
CsiI	ACCWGGT	1 cut(s)	1359
Csp6I	GTAC	6 cut(s)	491, 531, 745, 1348, 1457, 1580
CviAII	CATG	3 cut(s)	520, 715, 763
CviQI	GTAC	6 cut(s)	491, 531, 745, 1348, 1457, 1580
DdeI	CTNAG	8 cut(s)	74, 241, 416, 543, 818, 830, 929, 1193
DinI	GGCGCC	2 cut(s)	540, 1481
DraI	TTTAAA	1 cut(s)	1273
DrdI	GACNNNNNNGTC	1 cut(s)	793
DriI	GACNNNNNGTC	1 cut(s)	1050
DseDI	GACNNNNNNGTC	1 cut(s)	793
EaeI	YGGCCR	4 cut(s)	3, 280, 378, 1153
EagI	CGGCCG	1 cut(s)	1153
Eam1104I	CTCTTC	1 cut(s)	968
Eam1105I	GACNNNNNGTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	968
EciI	GGCGGA	3 cut(s)	150, 436, 693
Ecl136II	GAGCTC	1 cut(s)	933
EclXI	CGGCCG	1 cut(s)	1153
Eco130I	CCWWGG	1 cut(s)	1483
Eco24I	GRGCYC	2 cut(s)	874, 935
Eco31I	GGTCTC	3 cut(s)	1076, 1142, 1275
Eco47I	GGWCC	4 cut(s)	556, 586, 603, 1199
Eco52I	CGGCCG	1 cut(s)	1153
Eco53kI	GAGCTC	1 cut(s)	933
Eco57I	CTGAAG	3 cut(s)	547, 1013, 1281
Eco72I	CACGTG	2 cut(s)	742, 862
Eco88I	CYCGRG	2 cut(s)	392, 1086
Eco91I	GGTNACC	1 cut(s)	1307
EcoICRI	GAGCTC	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	871
EcoO65I	GGTNACC	1 cut(s)	1307
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	1359
EcoT14I	CCWWGG	1 cut(s)	1483
EcoT38I	GRGCYC	2 cut(s)	874, 935
EgeI	GGCGCC	2 cut(s)	540, 1481
EheI	GGCGCC	2 cut(s)	540, 1481
ErhI	CCWWGG	1 cut(s)	1483
Esp3I	CGTCTC	3 cut(s)	367, 779, 818
FaeI	CATG	3 cut(s)	523, 718, 766
FaiI	YATR	9 cut(s)	521, 716, 764, 1032, 1208, 1253, 1293, 1545, 1645
FaqI	GGGAC	2 cut(s)	616, 1212
FatI	CATG	3 cut(s)	519, 714, 762
FauI	CCCGC	6 cut(s)	96, 196, 410, 759, 882, 896
FbaI	TGATCA	1 cut(s)	1341
FokI	GGATG	3 cut(s)	311, 1278, 1386
FriOI	GRGCYC	2 cut(s)	874, 935
FspBI	CTAG	2 cut(s)	254, 1484
GlaI	GCGC	7 cut(s)	197, 227, 252, 540, 724, 902, 1481
GsuI	CTGGAG	2 cut(s)	1200, 1299
HaeII	RGCGCY	2 cut(s)	542, 1483
HaeIII	GGCC	9 cut(s)	5, 79, 282, 380, 614, 872, 1074, 1155, 1466
HapII	CCGG	8 cut(s)	173, 377, 506, 536, 609, 878, 1152, 1370
HgaI	GACGC	8 cut(s)	115, 220, 475, 651, 745, 783, 796, 835
HhaI	GCGC	7 cut(s)	198, 228, 253, 541, 725, 903, 1482
Hin1I	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
Hin1II	CATG	3 cut(s)	523, 718, 766
Hin6I	GCGC	7 cut(s)	196, 226, 251, 539, 723, 901, 1480
HinP1I	GCGC	7 cut(s)	196, 226, 251, 539, 723, 901, 1480
HincII	GTYRAC	2 cut(s)	633, 1141
HindII	GTYRAC	2 cut(s)	633, 1141
HinfI	GANTC	5 cut(s)	70, 257, 500, 682, 1502
HpaII	CCGG	8 cut(s)	173, 377, 506, 536, 609, 878, 1152, 1370
HphI	GGTGA	3 cut(s)	907, 1238, 1522
Hpy166II	GTNNAC	6 cut(s)	222, 531, 633, 745, 1141, 1592
Hpy188I	TCNGA	6 cut(s)	100, 681, 687, 819, 930, 1329
Hpy188III	TCNNGA	6 cut(s)	67, 314, 392, 850, 1403, 1436
Hpy8I	GTNNAC	6 cut(s)	222, 531, 633, 745, 1141, 1592
HpyAV	CCTTC	8 cut(s)	301, 445, 1013, 1088, 1256, 1298, 1507, 1606
HpyCH4III	ACNGT	4 cut(s)	361, 641, 1069, 1542
HpyCH4IV	ACGT	5 cut(s)	204, 527, 741, 861, 1011
HpyCH4V	TGCA	7 cut(s)	762, 940, 1015, 1418, 1538, 1592, 1631
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 259, 446, 698, 707, 968, 1071
HpyF3I	CTNAG	8 cut(s)	74, 241, 416, 543, 818, 830, 929, 1193
HpySE526I	ACGT	5 cut(s)	204, 527, 741, 861, 1011
Hsp92I	GRCGYC	7 cut(s)	107, 486, 539, 662, 756, 794, 1480
Hsp92II	CATG	3 cut(s)	523, 718, 766
HspAI	GCGC	7 cut(s)	196, 226, 251, 539, 723, 901, 1480
KasI	GGCGCC	2 cut(s)	538, 1479
Ksp22I	TGATCA	1 cut(s)	1341
KspI	CCGCGG	1 cut(s)	585
LmnI	GCTCC	6 cut(s)	96, 706, 906, 967, 1097, 1381
Lsp1109I	GCAGC	4 cut(s)	274, 679, 924, 1430
LweI	GCATC	2 cut(s)	1393, 1405
MabI	ACCWGGT	1 cut(s)	1359
MaeI	CTAG	2 cut(s)	254, 1484
MaeII	ACGT	5 cut(s)	204, 527, 741, 861, 1011
MaeIII	GTNAC	4 cut(s)	355, 641, 1217, 1307
MbiI	CCGCTC	2 cut(s)	91, 455
MboII	GAAGA	4 cut(s)	727, 985, 1006, 1244
MhlI	GDGCHC	4 cut(s)	874, 935, 964, 1594
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	5 cut(s)	307, 509, 1203, 1601, 1616
MluNI	TGGCCA	1 cut(s)	282
Mly113I	GGCGCC	2 cut(s)	539, 1480
MlyI	GAGTC	2 cut(s)	79, 494
MmeI	TCCRAC	2 cut(s)	710, 1359
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	2 cut(s)	1272, 1604
MslI	CAYNNNNRTG	1 cut(s)	767
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	4 cut(s)	39, 584, 710, 1421
MspI	CCGG	8 cut(s)	173, 377, 506, 536, 609, 878, 1152, 1370
MspR9I	CCNGG	6 cut(s)	173, 377, 506, 610, 1361, 1370
Mva1269I	GAATGC	1 cut(s)	1565
MvaI	CCWGG	1 cut(s)	1361
MvnI	CGCG	8 cut(s)	196, 226, 231, 251, 584, 674, 725, 903
MwoI	GCNNNNNNNGC	7 cut(s)	45, 259, 446, 698, 707, 968, 1071
NarI	GGCGCC	2 cut(s)	539, 1480
NciI	CCSGG	5 cut(s)	173, 377, 506, 610, 1370
NlaIII	CATG	3 cut(s)	523, 718, 766
NmeAIII	GCCGAG	1 cut(s)	330
NspI	RCATGY	1 cut(s)	766
PaeI	GCATGC	1 cut(s)	766
PaqCI	CACCTGC	1 cut(s)	1498
PcsI	WCGNNNNNNNCGW	6 cut(s)	113, 357, 495, 753, 794, 921
PctI	GAATGC	1 cut(s)	1565
PfeI	GAWTC	3 cut(s)	257, 682, 1502
PleI	GAGTC	2 cut(s)	78, 494
PluTI	GGCGCC	2 cut(s)	542, 1483
PmaCI	CACGTG	2 cut(s)	742, 862
PmlI	CACGTG	2 cut(s)	742, 862
PpsI	GAGTC	2 cut(s)	78, 494
Ppu21I	YACGTR	2 cut(s)	742, 862
PshBI	ATTAAT	1 cut(s)	1604
PsiI	TTATAA	1 cut(s)	1208
Psp124BI	GAGCTC	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	1359
PspCI	CACGTG	2 cut(s)	742, 862
PspEI	GGTNACC	1 cut(s)	1307
PspGI	CCWGG	1 cut(s)	1359
PspOMI	GGGCCC	1 cut(s)	870
PspPI	GGNCC	8 cut(s)	556, 586, 603, 612, 870, 871, 1073, 1199
PstI	CTGCAG	1 cut(s)	942
PvuII	CAGCTG	2 cut(s)	710, 1421
RsaI	GTAC	6 cut(s)	492, 532, 746, 1349, 1458, 1581
RsaNI	GTAC	6 cut(s)	491, 531, 745, 1348, 1457, 1580
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	935
SacII	CCGCGG	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	1272, 1604
Sau96I	GGNCC	8 cut(s)	556, 586, 603, 612, 870, 871, 1073, 1199
SchI	GAGTC	2 cut(s)	79, 494
ScrFI	CCNGG	6 cut(s)	173, 377, 506, 610, 1361, 1370
SduI	GDGCHC	4 cut(s)	874, 935, 964, 1594
SexAI	ACCWGGT	1 cut(s)	1359
SfaNI	GCATC	2 cut(s)	1393, 1405
SfcI	CTRYAG	1 cut(s)	938
SfoI	GGCGCC	2 cut(s)	540, 1481
Sfr303I	CCGCGG	1 cut(s)	585
SgrAI	CRCCGGYG	1 cut(s)	877
SgrBI	CCGCGG	1 cut(s)	585
SinI	GGWCC	4 cut(s)	556, 586, 603, 1199
SmiMI	CAYNNNNRTG	1 cut(s)	767
SphI	GCATGC	1 cut(s)	766
Sse9I	AATT	5 cut(s)	307, 509, 1203, 1601, 1616
SspDI	GGCGCC	2 cut(s)	538, 1479
SspMI	CTAG	2 cut(s)	254, 1484
SstI	GAGCTC	1 cut(s)	935
StyD4I	CCNGG	6 cut(s)	171, 375, 504, 608, 1359, 1368
StyI	CCWWGG	1 cut(s)	1483
TaaI	ACNGT	4 cut(s)	361, 641, 1069, 1542
TaiI	ACGT	5 cut(s)	207, 530, 744, 864, 1014
TasI	AATT	5 cut(s)	307, 509, 1203, 1601, 1616
TatI	WGTACW	2 cut(s)	530, 1347
TfiI	GAWTC	3 cut(s)	257, 682, 1502
Tru1I	TTAA	2 cut(s)	1272, 1604
Tru9I	TTAA	2 cut(s)	1272, 1604
TscAI	CASTG	1 cut(s)	1264
TseI	GCWGC	4 cut(s)	262, 692, 937, 1418
TspDTI	ATGAA	5 cut(s)	1226, 1245, 1515, 1558, 1590
TspGWI	ACGGA	3 cut(s)	357, 643, 1419
TspRI	CASTG	1 cut(s)	1264
VneI	GTGCAC	1 cut(s)	1590
VpaK11BI	GGWCC	4 cut(s)	556, 586, 603, 1199
VspI	ATTAAT	1 cut(s)	1604
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	766
XmaJI	CCTAGG	1 cut(s)	1483
XspI	CTAG	2 cut(s)	254, 1484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.