pycom06g13680

4-coumarate--CoA ligase-like 9

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
18571382 .. 18572663
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13680.2

Sequence Viewer

Length: 1050 bp
ATGGCGGACGAATCCACACCAAATCCCAAGAGCGGCTACTGCGTACAAACCAAGACCTTCCACACTCTCCGGCCTCCGGTCCCACTCCCACCACTCTCCCAACCCCTCTCCCTCACCCAGTTCACCCTCTCCCTCCTCCAATCCTCTACCGCCGCGCCCACCACCTCCGTCCTCATCGACGCCGCCTCCGACCGCCATGTCTCCTACCAAACTTTCCTCGGCCAAATCCATTCCCTCACTCTCTCCCTCCAATCCCTTGCCCCCTCTCTATCCAAAGGTCACGTGGCCTTCATTCTCTCCCCTCCTTCCCTCCACGTCCCCGTCCTCTATTTCTCTCTCCTCGCCTTAGGCGTCGTCGTTTCGCCTGCTAATCCAGTCGGGTCCGAGTCCGAGATCGCCTACCAGGTCCGGCTAACCCGACCAGTCATTGCCTTCGCCACGTCAGCAACAGCTCAGAAGCTCCCCAAGGGTAACGACAAAATCCGCAACGTTATACTCCTCGACTCGCCCGAATTCCTCTCCATGCTCGACCGGGTCGGTTCATCCGAAACACGACCCGACCTCCGGTTTGCAGTCAACCAGACCGACCCGGCTACGATTCTCTTCTCCTCCGGCACCACCGGCCGAGTTAAAGGCGTTCTCTTATCTCACCGCAACTTCATCGCCGTCATAGCTGGGCTCCACGCCCTTCACGAACCCGACACGGACCTACCCAACGGCCAAGAGGTGTCGCTGTTCACGCTACCTCTGTTCCACTTGTTCGGGTTCGTCATGGTGGTTCGGGCGGTGGCAATGGGCGGGACCTTGGTTTTGATGGAGAGGTTCGATTTCGAATCAATGCTGAGGGCCGTGGAGAGGCACAAAATCTCGTACATGCCGGTATCGCCGCCGCTGGTCGTTGCAATGGCGAAGTCGGAGCTGGTTAAGAAATACGATCGATCAGCTCGCTTCGGCATCTCGGCTGTGGCGGTGCGCCGCTGGGAAAGGACGTTGTTGACAGATTCCGTGAGAAATTTCCCACTGTTGAAATTGCACAGGGATATGGTTTGA

Protein Analysis

350

Amino Acids

38.19

Weight (kDa)

9.6

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 155
AclI AACGTT 1 cut(s) 489
AcoI YGGCCR 3 cut(s) 220, 622, 718
AcsI RAATTY 2 cut(s) 512, 1012
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 2 cut(s) 180, 351
AfaI GTAC 2 cut(s) 45, 872
AfiI CCNNNNNNNGG 4 cut(s) 32, 76, 564, 855
AgsI TTSAA 1 cut(s) 1027
AjiI CACGTC 2 cut(s) 316, 441
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 5 cut(s) 452, 460, 674, 919, 944
AluI AGCT 5 cut(s) 452, 460, 674, 919, 944
Alw26I GTCTC 1 cut(s) 205
AoxI GGCC 6 cut(s) 71, 220, 285, 622, 718, 846
ApoI RAATTY 2 cut(s) 512, 1012
ArsI GACNNNNNNTTYG 4 cut(s) 551, 583, 793, 825
AspLEI GCGC 2 cut(s) 157, 975
AspS9I GGNCC 6 cut(s) 79, 381, 406, 706, 801, 846
AsuC2I CCSGG 2 cut(s) 533, 590
AsuHPI GGTGA 3 cut(s) 106, 115, 641
AsuII TTCGAA 1 cut(s) 831
AvaII GGWCC 5 cut(s) 79, 381, 406, 706, 801
AxyI CCTNAGG 1 cut(s) 346
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 681
BbrPI CACGTG 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 842
BccI CCATC 1 cut(s) 808
BceAI ACGGC 3 cut(s) 650, 733, 833
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 2 cut(s) 533, 590
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 6 cut(s) 34, 153, 183, 887, 890, 976
BlsI GCNGC 6 cut(s) 35, 154, 184, 888, 891, 977
Bme1390I CCNGG 3 cut(s) 404, 533, 590
Bme18I GGWCC 5 cut(s) 79, 381, 406, 706, 801
BmgBI CACGTC 2 cut(s) 316, 441
BmgT120I GGNCC 6 cut(s) 79, 381, 406, 706, 801, 846
BmiI GGNNCC 5 cut(s) 81, 382, 616, 680, 802
BmrFI CCNGG 3 cut(s) 404, 533, 590
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 963
BmuI ACTGGG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 533, 590
Bsa29I ATCGAT 1 cut(s) 937
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 2 cut(s) 180, 351
BsaJI CCNNGG 4 cut(s) 217, 465, 804, 849
BsaWI WCCGGW 2 cut(s) 76, 564
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 546, 576
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 76, 564, 855
Bse118I RCCGGY 2 cut(s) 620, 877
Bse1I ACTGG 3 cut(s) 118, 374, 422
Bse21I CCTNAGG 1 cut(s) 346
Bse3DI GCAATG 3 cut(s) 426, 798, 909
BseBI CCWGG 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 4 cut(s) 217, 465, 804, 849
BseGI GGATG 1 cut(s) 542
BseLI CCNNNNNNNGG 4 cut(s) 32, 76, 564, 855
BseMI GCAATG 3 cut(s) 426, 798, 909
BseMII CTCAG 2 cut(s) 467, 833
BseNI ACTGG 3 cut(s) 118, 374, 422
BseRI GAGGAG 4 cut(s) 125, 329, 488, 598
BseX3I CGGCCG 1 cut(s) 622
BseYI CCCAGC 2 cut(s) 674, 978
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 4 cut(s) 193, 532, 625, 937
BshFI GGCC 6 cut(s) 73, 222, 287, 624, 720, 848
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 937
BsiEI CGRYCG 4 cut(s) 193, 532, 625, 937
BsiSI CCGG 9 cut(s) 70, 77, 409, 532, 565, 590, 612, 621, 878
BslFI GGGAC 3 cut(s) 65, 302, 814
BslI CCNNNNNNNGG 4 cut(s) 32, 76, 564, 855
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 3 cut(s) 65, 302, 814
BsnI GGCC 6 cut(s) 73, 222, 287, 624, 720, 848
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 3 cut(s) 393, 934, 938
BspANI GGCC 6 cut(s) 73, 222, 287, 624, 720, 848
BspCNI CTCAG 2 cut(s) 466, 834
BspDI ATCGAT 1 cut(s) 937
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 5 cut(s) 81, 382, 616, 680, 802
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 3 cut(s) 426, 798, 909
BsrFI RCCGGY 2 cut(s) 620, 877
BsrI ACTGG 3 cut(s) 118, 374, 422
BssAI RCCGGY 2 cut(s) 620, 877
BssECI CCNNGG 4 cut(s) 217, 465, 804, 849
BssMI GATC 3 cut(s) 393, 934, 938
BssNI GRCGYC 2 cut(s) 180, 351
BssT1I CCWWGG 2 cut(s) 465, 804
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 1023
Bst6I CTCTTC 1 cut(s) 608
BstACI GRCGYC 2 cut(s) 180, 351
BstBAI YACGTR 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 831
BstC8I GCNNGC 2 cut(s) 366, 946
BstDEI CTNAG 3 cut(s) 346, 453, 842
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 1 cut(s) 542
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 2 cut(s) 157, 975
BstKTI GATC 3 cut(s) 396, 937, 941
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 3 cut(s) 393, 934, 938
BstMCI CGRYCG 4 cut(s) 193, 532, 625, 937
BstMWI GCNNNNNNNGC 6 cut(s) 39, 443, 621, 671, 739, 883
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 877
BstSCI CCNGG 3 cut(s) 402, 531, 588
BstUI CGCG 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 346
BsuRI GGCC 6 cut(s) 73, 222, 287, 624, 720, 848
BsuTUI ATCGAT 1 cut(s) 937
BtgI CCRYGG 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 646
BtrI CACGTC 2 cut(s) 316, 441
BtsCI GGATG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 1019
Cac8I GCNNGC 2 cut(s) 366, 946
CfoI GCGC 2 cut(s) 157, 975
Cfr10I RCCGGY 2 cut(s) 620, 877
Cfr13I GGNCC 6 cut(s) 79, 381, 406, 706, 801, 846
ClaI ATCGAT 1 cut(s) 937
CseI GACGC 2 cut(s) 188, 340
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 2 cut(s) 44, 871
CviAII CATG 4 cut(s) 197, 523, 772, 874
CviQI GTAC 2 cut(s) 44, 871
DdeI CTNAG 3 cut(s) 346, 453, 842
DpnI GATC 3 cut(s) 395, 936, 940
DpnII GATC 3 cut(s) 393, 934, 938
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 3 cut(s) 220, 622, 718
EagI CGGCCG 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 622
Eco130I CCWWGG 2 cut(s) 465, 804
Eco24I GRGCYC 1 cut(s) 681
Eco47I GGWCC 5 cut(s) 79, 381, 406, 706, 801
Eco52I CGGCCG 1 cut(s) 622
Eco72I CACGTG 1 cut(s) 283
Eco81I CCTNAGG 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 801
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 2 cut(s) 465, 804
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 2 cut(s) 465, 804
FaeI CATG 4 cut(s) 200, 526, 775, 877
FaiI YATR 7 cut(s) 198, 494, 524, 671, 773, 875, 1043
FaqI GGGAC 3 cut(s) 65, 302, 814
FatI CATG 4 cut(s) 196, 522, 771, 873
FauI CCCGC 1 cut(s) 791
Fnu4HI GCNGC 6 cut(s) 34, 153, 183, 887, 890, 976
FokI GGATG 1 cut(s) 529
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 6 cut(s) 34, 153, 183, 887, 890, 976
GlaI GCGC 2 cut(s) 156, 974
GluI GCNGC 6 cut(s) 34, 153, 183, 887, 890, 976
GsaI CCCAGC 2 cut(s) 678, 982
HaeIII GGCC 6 cut(s) 73, 222, 287, 624, 720, 848
HapII CCGG 9 cut(s) 70, 77, 409, 532, 565, 590, 612, 621, 878
HgaI GACGC 2 cut(s) 188, 340
HhaI GCGC 2 cut(s) 157, 975
Hin1I GRCGYC 2 cut(s) 180, 351
Hin1II CATG 4 cut(s) 200, 526, 775, 877
Hin6I GCGC 2 cut(s) 155, 973
HinP1I GCGC 2 cut(s) 155, 973
HincII GTYRAC 2 cut(s) 577, 996
HindII GTYRAC 2 cut(s) 577, 996
HinfI GANTC 6 cut(s) 11, 386, 503, 598, 833, 1001
HpaII CCGG 9 cut(s) 70, 77, 409, 532, 565, 590, 612, 621, 878
HphI GGTGA 3 cut(s) 106, 115, 641
Hpy166II GTNNAC 4 cut(s) 123, 577, 738, 996
Hpy188I TCNGA 6 cut(s) 190, 385, 391, 456, 547, 916
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 4 cut(s) 123, 577, 738, 996
Hpy99I CGWCG 3 cut(s) 182, 356, 359
HpyAV CCTTC 5 cut(s) 67, 298, 315, 442, 698
HpyCH4III ACNGT 1 cut(s) 1023
HpyCH4IV ACGT 5 cut(s) 282, 315, 440, 489, 989
HpyCH4V TGCA 3 cut(s) 572, 902, 1033
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 443, 621, 671, 739, 883
HpyF3I CTNAG 3 cut(s) 346, 453, 842
HpySE526I ACGT 5 cut(s) 282, 315, 440, 489, 989
Hsp92I GRCGYC 2 cut(s) 180, 351
Hsp92II CATG 4 cut(s) 200, 526, 775, 877
HspAI GCGC 2 cut(s) 155, 973
Kzo9I GATC 3 cut(s) 393, 934, 938
LmnI GCTCC 3 cut(s) 465, 684, 916
LweI GCATC 1 cut(s) 963
MabI ACCWGGT 1 cut(s) 402
MaeII ACGT 5 cut(s) 282, 315, 440, 489, 989
MaeIII GTNAC 2 cut(s) 278, 470
MalI GATC 3 cut(s) 395, 936, 940
MbiI CCGCTC 1 cut(s) 33
MboI GATC 3 cut(s) 393, 934, 938
MboII GAAGA 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 3 cut(s) 512, 1012, 1028
MlyI GAGTC 2 cut(s) 395, 497
MmeI TCCRAC 2 cut(s) 213, 894
MseI TTAA 2 cut(s) 630, 924
MspA1I CMGCKG 2 cut(s) 892, 978
MspI CCGG 9 cut(s) 70, 77, 409, 532, 565, 590, 612, 621, 878
MspR9I CCNGG 3 cut(s) 404, 533, 590
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 6 cut(s) 39, 443, 621, 671, 739, 883
NciI CCSGG 2 cut(s) 533, 590
NdeII GATC 3 cut(s) 393, 934, 938
NlaIII CATG 4 cut(s) 200, 526, 775, 877
NlaIV GGNNCC 5 cut(s) 81, 382, 616, 680, 802
NmeAIII GCCGAG 3 cut(s) 198, 650, 938
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 877
NspV TTCGAA 1 cut(s) 831
PcsI WCGNNNNNNNCGW 5 cut(s) 186, 348, 507, 543, 690
PfeI GAWTC 4 cut(s) 11, 598, 833, 1001
PflFI GACNNNGTC 1 cut(s) 533
PkrI GCNGC 6 cut(s) 35, 154, 184, 888, 891, 977
Ple19I CGATCG 1 cut(s) 937
PleI GAGTC 2 cut(s) 394, 497
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
PpsI GAGTC 2 cut(s) 394, 497
Ppu21I YACGTR 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 801
Psp1406I AACGTT 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 402
PspCI CACGTG 1 cut(s) 283
PspFI CCCAGC 2 cut(s) 674, 978
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 5 cut(s) 81, 382, 616, 680, 802
PspPI GGNCC 6 cut(s) 79, 381, 406, 706, 801, 846
PspPPI RGGWCCY 1 cut(s) 801
PsyI GACNNNGTC 1 cut(s) 533
PvuI CGATCG 1 cut(s) 937
RsaI GTAC 2 cut(s) 45, 872
RsaNI GTAC 2 cut(s) 44, 871
SaqAI TTAA 2 cut(s) 630, 924
SatI GCNGC 6 cut(s) 34, 153, 183, 887, 890, 976
Sau3AI GATC 3 cut(s) 393, 934, 938
Sau96I GGNCC 6 cut(s) 79, 381, 406, 706, 801, 846
SchI GAGTC 2 cut(s) 395, 497
ScrFI CCNGG 3 cut(s) 404, 533, 590
SduI GDGCHC 1 cut(s) 681
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 1 cut(s) 963
SfuI TTCGAA 1 cut(s) 831
SinI GGWCC 5 cut(s) 79, 381, 406, 706, 801
Sse9I AATT 3 cut(s) 512, 1012, 1028
StyD4I CCNGG 3 cut(s) 402, 531, 588
StyI CCWWGG 2 cut(s) 465, 804
TaaI ACNGT 1 cut(s) 1023
TaiI ACGT 5 cut(s) 285, 318, 443, 492, 992
TaqI TCGA 6 cut(s) 177, 501, 528, 825, 831, 937
TaqII GACCGA 1 cut(s) 599
TasI AATT 3 cut(s) 512, 1012, 1028
TauI GCSGC 6 cut(s) 36, 155, 185, 889, 892, 978
TfiI GAWTC 4 cut(s) 11, 598, 833, 1001
Tru1I TTAA 2 cut(s) 630, 924
Tru9I TTAA 2 cut(s) 630, 924
TscAI CASTG 1 cut(s) 1026
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 280, 531, 649
TspGWI ACGGA 3 cut(s) 157, 719, 994
TspRI CASTG 1 cut(s) 1026
Tth111I GACNNNGTC 1 cut(s) 533
VpaK11BI GGWCC 5 cut(s) 79, 381, 406, 706, 801
XapI RAATTY 2 cut(s) 512, 1012
XceI RCATGY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.