Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Forward (+)

18572747 .. 18574079

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGCCAAGATTGTCGACCCTGAAACAGGAGAGGCATTGCCTCCCGGCAAGAGGGGTGAGCTATGGCTGCGAGGTCCATCGGTCATGAAGGGTTATGTAGGAGATGACAAGGCAACTTCTGAGACCTTGGACAAAGACGGGTGGCTGAAGACCGGTGATCTTTGTTATTTCGATGACGAGGGGTTCCTCTACATTGTTGACAGGTTGAAGGAATTGATAAAGTACAAGGCATATCAGGTACCTCCAGCTGAGCTGGAACATATACTTCTATCCCATCCTGACATTGCCGATGCTGCTGTGATTCCGTATCCGGATGAAGATGCAGGGGAGATTCCCATGGCCTATGTGGTTAGAAAGCCCGGAAGCAACATCACCGAGGTTCTAGTTATGGATTTCGTTGCAAAACAAGTTTCACCGTACAAGAAGATACGGCGGGTAGCGTTTATCAACACCATTCCAAAATCTCCAGCAGGGAAGATCTTGAGGAGGGAGCTAGTCAATCATGCTTTATCTAGTAGTTCATCTAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

179

Amino Acids

19.79

Weight (kDa)

5.68

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	227, 243, 422
AfiI	CCNNNNNNNGG	2 cut(s)	29, 54
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	4 cut(s)	64, 251, 256, 496
AluI	AGCT	4 cut(s)	64, 251, 256, 496
Alw26I	GTCTC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	70, 296
AsiGI	ACCGGT	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	48, 363
AsuHPI	GGTGA	4 cut(s)	71, 170, 367, 408
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	57, 283
BccI	CCATC	2 cut(s)	88, 285
BceAI	ACGGC	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	2 cut(s)	48, 363
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	3 cut(s)	386, 497, 516
BfuI	GTATCC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	2 cut(s)	71, 297
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	2 cut(s)	72, 298
Bme1390I	CCNGG	2 cut(s)	48, 363
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	188, 243
BmrFI	CCNGG	2 cut(s)	48, 363
BmsI	GCATC	2 cut(s)	283, 313
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	2 cut(s)	231, 453
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	2 cut(s)	48, 363
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	129, 339, 378
BsaWI	WCCGGW	2 cut(s)	155, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 54
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	38, 285
BseAI	TCCGGA	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	129, 339, 378
BseGI	GGATG	2 cut(s)	277, 322
BseLI	CCNNNNNNNGG	2 cut(s)	29, 54
BseMI	GCAATG	2 cut(s)	38, 285
BseMII	CTCAG	2 cut(s)	114, 243
BseRI	GAGGAG	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	57, 283
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	241
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	48, 156, 314, 363
BslI	CCNNNNNNNGG	2 cut(s)	29, 54
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	160, 480
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	115, 244
BspEI	TCCGGA	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	188, 243
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	38, 285
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	129, 339, 378
BssMI	GATC	2 cut(s)	160, 480
BssT1I	CCWWGG	2 cut(s)	129, 339
Bst4CI	ACNGT	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	123, 252
BstDSI	CCRYGG	1 cut(s)	339
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	277, 322
BstKTI	GATC	2 cut(s)	163, 483
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	160, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 296
BstSCI	CCNGG	2 cut(s)	46, 361
BstV1I	GCAGC	2 cut(s)	57, 283
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	277, 322
CciI	TCATGA	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	226, 242, 421
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	3 cut(s)	88, 340, 506
CviJI	RGCY	9 cut(s)	8, 64, 70, 148, 251, 256, 344, 361, 496
CviKI_1	RGCY	9 cut(s)	8, 64, 70, 148, 251, 256, 344, 361, 496
CviQI	GTAC	3 cut(s)	226, 242, 421
DdeI	CTNAG	2 cut(s)	123, 252
DpnI	GATC	2 cut(s)	162, 482
DpnII	GATC	2 cut(s)	160, 480
Eco130I	CCWWGG	2 cut(s)	129, 339
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	129, 339
ErhI	CCWWGG	2 cut(s)	129, 339
FaeI	CATG	3 cut(s)	91, 343, 509
FatI	CATG	3 cut(s)	87, 339, 505
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	71, 297
FokI	GGATG	2 cut(s)	264, 329
Fsp4HI	GCNGC	2 cut(s)	71, 297
FspBI	CTAG	3 cut(s)	386, 497, 516
GluI	GCNGC	2 cut(s)	71, 297
GsuI	CTGGAG	2 cut(s)	231, 453
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	4 cut(s)	48, 156, 314, 363
Hin1II	CATG	3 cut(s)	91, 343, 509
HincII	GTYRAC	2 cut(s)	19, 202
HindII	GTYRAC	2 cut(s)	19, 202
HinfI	GANTC	2 cut(s)	304, 334
HpaII	CCGG	4 cut(s)	48, 156, 314, 363
HphI	GGTGA	4 cut(s)	71, 170, 367, 408
Hpy166II	GTNNAC	2 cut(s)	19, 202
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	88, 281, 314, 484
Hpy8I	GTNNAC	2 cut(s)	19, 202
HpyAV	CCTTC	2 cut(s)	85, 205
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	326, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 296
HpyF3I	CTNAG	2 cut(s)	123, 252
Hsp92II	CATG	3 cut(s)	91, 343, 509
Kpn2I	TCCGGA	1 cut(s)	313
KpnI	GGTACC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	160, 480
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	57, 283
LweI	GCATC	2 cut(s)	283, 313
MaeI	CTAG	3 cut(s)	386, 497, 516
MalI	GATC	2 cut(s)	162, 482
MboI	GATC	2 cut(s)	160, 480
MboII	GAAGA	4 cut(s)	163, 332, 439, 490
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	2 cut(s)	215, 530
MroI	TCCGGA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	4 cut(s)	48, 156, 314, 363
MspR9I	CCNGG	2 cut(s)	48, 363
MwoI	GCNNNNNNNGC	2 cut(s)	70, 296
NciI	CCSGG	2 cut(s)	48, 363
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	160, 480
NlaIII	CATG	3 cut(s)	91, 343, 509
NlaIV	GGNNCC	2 cut(s)	188, 243
PagI	TCATGA	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	304, 334
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	72, 298
PspN4I	GGNNCC	2 cut(s)	188, 243
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	227, 243, 422
RsaNI	GTAC	3 cut(s)	226, 242, 421
SalI	GTCGAC	1 cut(s)	17
SatI	GCNGC	2 cut(s)	71, 297
Sau3AI	GATC	2 cut(s)	160, 480
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	48, 363
SfaNI	GCATC	2 cut(s)	283, 313
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	2 cut(s)	215, 530
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	386, 497, 516
StyD4I	CCNGG	2 cut(s)	46, 361
StyI	CCWWGG	2 cut(s)	129, 339
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	18, 174
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	215, 530
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	304, 334
TseI	GCWGC	2 cut(s)	70, 296
TspDTI	ATGAA	3 cut(s)	104, 333, 513
TspGWI	ACGGA	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	386, 497, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.