Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006263.1

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

80248 .. 81676

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006263.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtcaaactttgaagccaagattgttgacccagagaccggcagtgccttgcctcctctaatgactggagagctttggcttaggggaccaattataatgaaaggttacattggtgatgaagaagcaaatgctataactatggacactgaaggatggtttaaaactggagacctttgctatatcgacaaagaaggttacctatttttcgttgatcggatcaaggaactgatcaagtacaaaggctaccaggttgccccggcagagttggagcatctgcttcaatcccatcccgatattgctgattcagctgtggttccgtatcctgatgaggaagcaggtcaagtaccaatggcctttgtggtcaggcgcctaggaagtgtcgtcgatgaatcgcaggtgaaggattttattgccaaacaggtcgcaccatataagaaattacgacgagtagcattcatcaatgaagtaccaaagagtgcacaaggtaaattaatgaggaaggaattagtcaaacttgcattatccaagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

177

Amino Acids

19.86

Weight (kDa)

5.52

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	2 cut(s)	326, 385
AccB1I	GGYRCC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	3 cut(s)	236, 345, 468
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	14, 281
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	73, 308
AluI	AGCT	2 cut(s)	73, 308
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	2 cut(s)	29, 162
Alw44I	GTGCAC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	351
ApaLI	GTGCAC	1 cut(s)	477
AseI	ATTAAT	1 cut(s)	491
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	125, 409
AvaII	GGWCC	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	481
BccI	CCATC	2 cut(s)	147, 294
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	330
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	29, 162
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	370
BfuAI	ACCTGC	2 cut(s)	326, 385
BfuI	GTATCC	1 cut(s)	330
BlnI	CCTAGG	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	248, 257
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	87, 315, 368
BmrFI	CCNGG	2 cut(s)	248, 257
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	2 cut(s)	87, 186
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	367
BsaI	GGTCTC	2 cut(s)	29, 162
BsaJI	CCNNGG	2 cut(s)	255, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	70, 169
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	255, 370
BseGI	GGATG	2 cut(s)	158, 286
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	70, 169
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	39, 257
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	29, 162
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	2 cut(s)	29, 162
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	211, 216, 228
BspANI	GGCC	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	87, 315, 368
BspMI	ACCTGC	2 cut(s)	326, 385
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	366
BspTNI	GGTCTC	2 cut(s)	29, 162
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	70, 169
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	255, 370
BssMI	GATC	3 cut(s)	211, 216, 228
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	158, 286
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	214, 219, 231
BstMAI	GTCTC	2 cut(s)	29, 162
BstMBI	GATC	3 cut(s)	211, 216, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	246, 255
BstSLI	GKGCMC	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	158, 286
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 144
BveI	ACCTGC	2 cut(s)	326, 385
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	3 cut(s)	235, 344, 467
CviJI	RGCY	6 cut(s)	17, 73, 79, 243, 308, 353
CviKI_1	RGCY	6 cut(s)	17, 73, 79, 243, 308, 353
CviQI	GTAC	3 cut(s)	235, 344, 467
DdeI	CTNAG	1 cut(s)	80
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	3 cut(s)	213, 218, 230
DpnII	GATC	3 cut(s)	211, 216, 228
DraI	TTTAAA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	370
Eco31I	GGTCTC	2 cut(s)	29, 162
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	370
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	370
FaiI	YATR	7 cut(s)	95, 134, 140, 180, 430, 432, 532
FaqI	GGGAC	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	228
FokI	GGATG	2 cut(s)	165, 273
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	87, 186
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	39, 257
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	302, 389
HpaII	CCGG	2 cut(s)	39, 257
HphI	GGTGA	2 cut(s)	125, 409
Hpy166II	GTNNAC	2 cut(s)	28, 479
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	290, 323
Hpy8I	GTNNAC	2 cut(s)	28, 479
Hpy99I	CGWCG	2 cut(s)	386, 447
HpyAV	CCTTC	4 cut(s)	143, 185, 394, 493
HpyCH4V	TGCA	2 cut(s)	479, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	367
HspAI	GCGC	1 cut(s)	367
KasI	GGCGCC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	211, 216, 228
LmnI	GCTCC	1 cut(s)	268
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	104, 194
MalI	GATC	3 cut(s)	213, 218, 230
MboI	GATC	3 cut(s)	211, 216, 228
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	4 cut(s)	90, 437, 488, 503
Mly113I	GGCGCC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	63, 66, 322, 489
MseI	TTAA	2 cut(s)	159, 491
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	39, 257
MspR9I	CCNGG	2 cut(s)	248, 257
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	305
NarI	GGCGCC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	3 cut(s)	211, 216, 228
NlaIV	GGNNCC	3 cut(s)	87, 315, 368
PaqCI	CACCTGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	302, 389
PluTI	GGCGCC	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	87, 315, 368
PspPI	GGNCC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	236, 345, 468
RsaNI	GTAC	3 cut(s)	235, 344, 467
SaqAI	TTAA	2 cut(s)	159, 491
Sau3AI	GATC	3 cut(s)	211, 216, 228
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	248, 257
SduI	GDGCHC	1 cut(s)	481
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	90, 437, 488, 503
SspDI	GGCGCC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	246, 255
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	2 cut(s)	183, 384
TasI	AATT	4 cut(s)	90, 437, 488, 503
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	302, 389
Tru1I	TTAA	2 cut(s)	159, 491
Tru9I	TTAA	2 cut(s)	159, 491
TscAI	CASTG	2 cut(s)	49, 151
TspDTI	ATGAA	5 cut(s)	113, 132, 402, 445, 477
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	49, 151
VneI	GTGCAC	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	491
XmaJI	CCTAGG	1 cut(s)	370
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.