Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8020444.1

Orthogroup ID

OG0001900

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 355

Gene Structure 355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8020444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgtcaaactttgaagccaagattgttgacccagagaccggcagtgccttgcctcctctaatgactggagagctttggcttaggggaccaattataatgaaaggttacattggtgatgaagaagcaaatgctataactatggacactgaaggatggtttaaaactggagacctttgctatatcgacaaagaaggttacctatttttcgttgatcggatcaaggaactgatcaagtacaaaggctaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

4.56

Isoelectric Point (pI)

10.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63380
fragaria_vesca	FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750
malus_domestica	MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1
prunus_persica	Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1
pyrus_communis	pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580
rosa_chinensis	RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681
rosa_laevigata	RLG00000004504 RLG00000006935
rosa_multiflora	Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264410 Rroxscaffold_5G00372640
rosa_rugosa	Rorug04G0247400 Rorug06G0506300 Rorug06G0506400
rosa_samantha	Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800
rosa_wichuraiana	Rw4G026360 Rw7G009850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AclWI	GGATC	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	29, 162
AlwI	GGATC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	86
BccI	CCATC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	29, 162
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	87, 186
Bpu10I	CCTNAGC	1 cut(s)	80
BsaI	GGTCTC	2 cut(s)	29, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	70, 169
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	70, 169
BseRI	GAGGAG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	29, 162
BsmFI	GGGAC	1 cut(s)	99
Bso31I	GGTCTC	2 cut(s)	29, 162
Bsp143I	GATC	3 cut(s)	211, 216, 228
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	2 cut(s)	29, 162
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	70, 169
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	3 cut(s)	211, 216, 228
BstDEI	CTNAG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	214, 219, 231
BstMAI	GTCTC	2 cut(s)	29, 162
BstMBI	GATC	3 cut(s)	211, 216, 228
BstPI	GGTNACC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 144
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	4 cut(s)	17, 73, 79, 243
CviKI_1	RGCY	4 cut(s)	17, 73, 79, 243
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	3 cut(s)	213, 218, 230
DpnII	GATC	3 cut(s)	211, 216, 228
DraI	TTTAAA	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	29, 162
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	194
FaiI	YATR	4 cut(s)	95, 134, 140, 180
FaqI	GGGAC	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	228
FokI	GGATG	1 cut(s)	165
GsuI	CTGGAG	2 cut(s)	87, 186
HapII	CCGG	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	143, 185
HpyF3I	CTNAG	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	211, 216, 228
LpnPI	CCDG	4 cut(s)	45, 51, 52, 150
MaeIII	GTNAC	2 cut(s)	104, 194
MalI	GATC	3 cut(s)	213, 218, 230
MboI	GATC	3 cut(s)	211, 216, 228
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	2 cut(s)	63, 66
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	211, 216, 228
NlaIV	GGNNCC	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	95
PspEI	GGTNACC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	211, 216, 228
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	5 cut(s)	75, 106, 174, 196, 201
SgeI	CNNG	8 cut(s)	31, 44, 51, 61, 78, 177, 232, 244
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	49, 151
TspDTI	ATGAA	2 cut(s)	113, 132
TspRI	CASTG	2 cut(s)	49, 151
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.