Rorug06G0506300

4-coumarate--CoA ligase-like 9

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
62165170 .. 62166609
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0506300.1

Sequence Viewer

Length: 1440 bp
ATGGCTGCCACATCTGTGATCTGTCCTTGGACTTTCTTGGATGAAGGGGCCTCAACAAAGAGATCCTACGCATCTGTGGTTCGCCCGTCTTCCATTCCCATTGTGGATTTACCAGCGCCGGTTGTACAGGATGGGAAGACTACTGTTATGATATCTGAGGAAGCCTATCAGTCTGGGCTGGATAAGTGTAAGCACATGTTGCTTGGTCGCCTGCAATTAGCCTTCGGGGATAAGCCGTATTCTCCACCCGATCTGCAGCGTAAGCTTGGGGTTATTTGGAGTGGTCTAGGTAGTTGGACGATCATCCCAATGGAGAAGGGATATTACTCGTTCAATTTTGCCTCTGCAGATTCACTGGCTAGGGTTTGGGCACAAGGTGCTATCGCTCTCAAGACTGGTACGTTGAGGTTTATGAAATGGGTTCCGAATTTCTCCCCGGCGAGTCAAAAGAACACGAATGCGCAGGTGTGGGTTAGATTTTGGAATCTAGGGCTGGAATTCTGGGAAGCACGGACGTTATCTGAGATTGCTAGTGGTATTGGCGCTCCCGTGAAAATTGACCCCAACACTTTGGAACGCAAATATGGTCTGTTTGCTAGGGTTCTTGTGGACGTTGATCTCTCTGCTGACCTTCCTTTGGAGGTTGTGATCAAGCGTAAGAATGGAGAAATTTTTGTGCAAGCGGTGGATTATGAGAAGCTTCCTGACCTTTGTTCCCATTGTGGTAATGTGGGACATCGTATCACAGATTGCAAATTTGTACTAAATCCCTCTGCCAATGAATCTAATGATTCAAGGTATGTTCGCGGACGGTCTCGAAGGCGTGGAGCTAAACAGTCCCGAAAGAGGGTTGTTTCCCAGGTGTATGTTCTGAAGCAGCGCCCCAGTAAGGAGATTATTGTTCAGGCCACTCCTACTCCGATTATGGACGATGGTGAAGGCCCTTCTTTTGTGCAGAAGTCGCCAATTGTTCAGGAAAATCATGATACGGATGGCGTGGATAAGTCGTTGTGTGATGAGATTTTAGCACAACCTAATGAGGTTAGGTCAGCTGTGAACTCACTTTTGCAGCTTCCTCTTGAGCAAGAGGACGCACTGATTTCCGCTCCCGAAGGTTGCATGAGAGATGAGGCTAGTGGGATGGAGCTGGTTGTTAGTACTGTGAGTGTACCTATTGAGGGTGCAACACTGCAGGTGGTGGATAATGTGGTTCCCCAGGTTGGTGATCTTCAGGAAACCAGAGGTTTTTCTCCGCAAAGAGGAGCCACGGGAGGGGGAACTCTACTTGATAGTTGGTTTGATGAAATTGAACGGGATGTTCAGGAGGGTGAGTTTACAGTGGTTCAGTCTAAAGCTCAAAAGAAAAACCAGAAGAGACAAGCGGCTTTGGCTTCCAACAGAGAAGCTTATCTTCATCGTTCTAAAAGTGTTCCTCAATGA

Protein Analysis

479

Amino Acids

52.86

Weight (kDa)

6.57

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 61 - 147 2.2e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 454, 1183
Acc16I TGCGCA 1 cut(s) 462
Acc36I ACCTGC 2 cut(s) 454, 1183
AccBSI CCGCTC 1 cut(s) 1106
AccII CGCG 1 cut(s) 807
AciI CCGC 5 cut(s) 683, 807, 1104, 1253, 1382
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 4 cut(s) 427, 497, 669, 755
AcuI CTGAAG 2 cut(s) 893, 1214
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 5 cut(s) 126, 400, 762, 1159, 1170
AfiI CCNNNNNNNGG 8 cut(s) 637, 846, 847, 889, 1178, 1220, 1259, 1272
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 334, 795, 1310
AjnI CCWGG 2 cut(s) 858, 1215
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 8 cut(s) 265, 700, 830, 1052, 1072, 1147, 1355, 1406
AluI AGCT 8 cut(s) 265, 700, 830, 1052, 1072, 1147, 1355, 1406
Alw26I GTCTC 2 cut(s) 819, 1369
AlwI GGATC 1 cut(s) 57
AoxI GGCC 3 cut(s) 48, 906, 940
ApeKI GCWGC 4 cut(s) 5, 256, 877, 1069
ApoI RAATTY 4 cut(s) 427, 497, 669, 755
AspLEI GCGC 4 cut(s) 118, 463, 545, 882
AspS9I GGNCC 2 cut(s) 48, 941
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 947, 1235, 1340
BaeGI GKGCMC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
BbsI GAAGAC 2 cut(s) 81, 143
BbvI GCAGC 3 cut(s) 268, 889, 1081
BccI CCATC 4 cut(s) 125, 926, 986, 1135
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 860, 1217
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 819, 1369
BfaI CTAG 6 cut(s) 287, 360, 488, 531, 597, 1134
BfmI CTRYAG 3 cut(s) 254, 345, 1190
BfoI RGCGCY 3 cut(s) 119, 546, 883
BfuAI ACCTGC 2 cut(s) 454, 1183
BisI GCNGC 5 cut(s) 6, 257, 878, 1070, 1383
BlsI GCNGC 5 cut(s) 7, 258, 879, 1071, 1384
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 3 cut(s) 437, 860, 1217
BmgT120I GGNCC 2 cut(s) 48, 941
BmiI GGNNCC 4 cut(s) 49, 423, 1212, 1264
BmrFI CCNGG 3 cut(s) 437, 860, 1217
BmrI ACTGGG 1 cut(s) 879
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 879
BpiI GAAGAC 2 cut(s) 81, 143
BpuEI CTTGAG 2 cut(s) 374, 1100
BpuMI CCSGG 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 5 cut(s) 26, 435, 858, 1215, 1266
BsaXI ACNNNNNCTCC 4 cut(s) 901, 931, 1316, 1346
Bsc4I CCNNNNNNNGG 8 cut(s) 637, 846, 847, 889, 1178, 1220, 1259, 1272
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 3 cut(s) 360, 400, 885
BseBI CCWGG 2 cut(s) 860, 1217
BseDI CCNNGG 5 cut(s) 26, 435, 858, 1215, 1266
BseGI GGATG 6 cut(s) 46, 136, 303, 997, 1146, 1321
BseLI CCNNNNNNNGG 8 cut(s) 637, 846, 847, 889, 1178, 1220, 1259, 1272
BseMII CTCAG 2 cut(s) 147, 513
BseNI ACTGG 3 cut(s) 360, 400, 885
BseRI GAGGAG 1 cut(s) 1275
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 268, 889, 1081
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 3 cut(s) 50, 908, 942
BsiSI CCGG 2 cut(s) 119, 437
BslFI GGGAC 2 cut(s) 747, 823
BslI CCNNNNNNNGG 8 cut(s) 637, 846, 847, 889, 1178, 1220, 1259, 1272
BsmAI GTCTC 2 cut(s) 819, 1369
BsmFI GGGAC 2 cut(s) 747, 823
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 3 cut(s) 50, 908, 942
Bso31I GGTCTC 1 cut(s) 819
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
BspACI CCGC 5 cut(s) 683, 807, 1104, 1253, 1382
BspANI GGCC 3 cut(s) 50, 908, 942
BspCNI CTCAG 2 cut(s) 148, 514
BspFNI CGCG 1 cut(s) 807
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 4 cut(s) 49, 423, 1212, 1264
BspMAI CTGCAG 3 cut(s) 258, 349, 1194
BspMI ACCTGC 2 cut(s) 454, 1183
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 819
BsrBI CCGCTC 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 3 cut(s) 360, 400, 885
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 5 cut(s) 26, 435, 858, 1215, 1266
BssMI GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 860, 1217
Bst4CI ACNGT 5 cut(s) 145, 813, 837, 1162, 1339
Bst6I CTCTTC 1 cut(s) 1367
BstAPI GCANNNNNTGC 2 cut(s) 199, 377
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 212, 681
BstDEI CTNAG 2 cut(s) 156, 522
BstDSI CCRYGG 1 cut(s) 1266
BstF5I GGATG 6 cut(s) 46, 136, 303, 997, 1146, 1321
BstFNI CGCG 1 cut(s) 807
BstH2I RGCGCY 3 cut(s) 119, 546, 883
BstHHI GCGC 4 cut(s) 118, 463, 545, 882
BstKTI GATC 7 cut(s) 21, 65, 253, 303, 619, 651, 1228
BstMAI GTCTC 2 cut(s) 819, 1369
BstMBI GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
BstMWI GCNNNNNNNGC 5 cut(s) 199, 262, 377, 961, 1388
BstNI CCWGG 2 cut(s) 860, 1217
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 435, 858, 1215
BstSFI CTRYAG 3 cut(s) 254, 345, 1190
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 3 cut(s) 268, 889, 1081
BstV2I GAAGAC 2 cut(s) 81, 143
BstX2I RGATCY 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 3 cut(s) 50, 908, 942
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 6 cut(s) 46, 136, 303, 997, 1146, 1321
BtsI GCAGTG 1 cut(s) 1187
BtsIMutI CAGTG 4 cut(s) 353, 1094, 1187, 1344
BveI ACCTGC 2 cut(s) 454, 1183
Cac8I GCNNGC 2 cut(s) 212, 681
CciI TCATGA 1 cut(s) 982
CfoI GCGC 4 cut(s) 118, 463, 545, 882
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 48, 941
CseI GACGC 1 cut(s) 1100
Csp6I GTAC 5 cut(s) 125, 399, 761, 1158, 1169
CviAII CATG 3 cut(s) 196, 983, 1120
CviQI GTAC 5 cut(s) 125, 399, 761, 1158, 1169
DdeI CTNAG 2 cut(s) 156, 522
DpnI GATC 7 cut(s) 20, 64, 252, 302, 618, 650, 1227
DpnII GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 1367
EarI CTCTTC 1 cut(s) 1367
Eco130I CCWWGG 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 893, 1214
EcoO109I RGGNCCY 2 cut(s) 48, 941
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 858, 1215
EcoRV GATATC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 199, 986, 1123
FalI AAGNNNNNCTT 2 cut(s) 1395, 1427
FaqI GGGAC 2 cut(s) 747, 823
FatI CATG 3 cut(s) 195, 982, 1119
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 6, 257, 878, 1070, 1383
FokI GGATG 6 cut(s) 53, 143, 290, 1004, 1153, 1328
Fsp4HI GCNGC 5 cut(s) 6, 257, 878, 1070, 1383
FspBI CTAG 6 cut(s) 287, 360, 488, 531, 597, 1134
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 4 cut(s) 117, 462, 544, 881
GluI GCNGC 5 cut(s) 6, 257, 878, 1070, 1383
HaeII RGCGCY 3 cut(s) 119, 546, 883
HaeIII GGCC 3 cut(s) 50, 908, 942
HapII CCGG 2 cut(s) 119, 437
HgaI GACGC 1 cut(s) 1100
HhaI GCGC 4 cut(s) 118, 463, 545, 882
Hin1II CATG 3 cut(s) 199, 986, 1123
Hin6I GCGC 4 cut(s) 116, 461, 543, 880
HinP1I GCGC 4 cut(s) 116, 461, 543, 880
HindIII AAGCTT 3 cut(s) 263, 698, 1404
HinfI GANTC 5 cut(s) 350, 442, 484, 782, 791
HpaII CCGG 2 cut(s) 119, 437
HphI GGTGA 3 cut(s) 947, 1235, 1340
Hpy166II GTNNAC 4 cut(s) 610, 1057, 1169, 1335
Hpy188I TCNGA 5 cut(s) 157, 426, 523, 873, 921
Hpy8I GTNNAC 4 cut(s) 610, 1057, 1169, 1335
HpyAV CCTTC 8 cut(s) 38, 232, 310, 641, 813, 932, 954, 1106
HpyCH4III ACNGT 5 cut(s) 145, 813, 837, 1162, 1339
HpyCH4IV ACGT 3 cut(s) 401, 515, 612
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 262, 377, 961, 1388
HpyF3I CTNAG 2 cut(s) 156, 522
HpySE526I ACGT 3 cut(s) 401, 515, 612
Hsp92II CATG 3 cut(s) 199, 986, 1123
HspAI GCGC 4 cut(s) 116, 461, 543, 880
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
LmnI GCTCC 5 cut(s) 550, 827, 1111, 1144, 1262
Lsp1109I GCAGC 3 cut(s) 268, 889, 1081
LweI GCATC 1 cut(s) 80
MaeI CTAG 6 cut(s) 287, 360, 488, 531, 597, 1134
MaeII ACGT 3 cut(s) 401, 515, 612
MalI GATC 7 cut(s) 20, 64, 252, 302, 618, 650, 1227
MbiI CCGCTC 1 cut(s) 1106
MboI GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
MboII GAAGA 5 cut(s) 81, 148, 1220, 1384, 1403
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 9 cut(s) 215, 334, 427, 497, 555, 669, 755, 966, 1305
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 2 cut(s) 275, 1419
MslI CAYNNNNRTG 2 cut(s) 14, 308
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 2 cut(s) 119, 437
MspR9I CCNGG 3 cut(s) 437, 860, 1217
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 860, 1217
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 5 cut(s) 199, 262, 377, 961, 1388
NciI CCSGG 1 cut(s) 437
NdeII GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
NlaIII CATG 3 cut(s) 199, 986, 1123
NlaIV GGNNCC 4 cut(s) 49, 423, 1212, 1264
NsbI TGCGCA 1 cut(s) 462
NspI RCATGY 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 982
PaqCI CACCTGC 2 cut(s) 454, 1183
PciI ACATGT 1 cut(s) 195
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 4 cut(s) 350, 484, 782, 791
PkrI GCNGC 5 cut(s) 7, 258, 879, 1071, 1384
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 858, 1215
PspGI CCWGG 2 cut(s) 858, 1215
PspN4I GGNNCC 4 cut(s) 49, 423, 1212, 1264
PspPI GGNCC 2 cut(s) 48, 941
PstI CTGCAG 3 cut(s) 258, 349, 1194
PsuI RGATCY 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 5 cut(s) 126, 400, 762, 1159, 1170
RsaNI GTAC 5 cut(s) 125, 399, 761, 1158, 1169
RseI CAYNNNNRTG 2 cut(s) 14, 308
SatI GCNGC 5 cut(s) 6, 257, 878, 1070, 1383
Sau3AI GATC 7 cut(s) 18, 62, 250, 300, 616, 648, 1225
Sau96I GGNCC 2 cut(s) 48, 941
ScaI AGTACT 1 cut(s) 1159
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 3 cut(s) 437, 860, 1217
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 3 cut(s) 254, 345, 1190
SmiMI CAYNNNNRTG 2 cut(s) 14, 308
SmlI CTYRAG 2 cut(s) 389, 1079
SmoI CTYRAG 2 cut(s) 389, 1079
Sse9I AATT 9 cut(s) 215, 334, 427, 497, 555, 669, 755, 966, 1305
SsiI CCGC 5 cut(s) 683, 807, 1104, 1253, 1382
SspMI CTAG 6 cut(s) 287, 360, 488, 531, 597, 1134
StyD4I CCNGG 3 cut(s) 435, 858, 1215
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 5 cut(s) 145, 813, 837, 1162, 1339
TaiI ACGT 3 cut(s) 404, 518, 615
TaqI TCGA 1 cut(s) 817
TasI AATT 9 cut(s) 215, 334, 427, 497, 555, 669, 755, 966, 1305
TatI WGTACW 3 cut(s) 124, 760, 1157
TauI GCSGC 1 cut(s) 1385
TfiI GAWTC 4 cut(s) 350, 484, 782, 791
TscAI CASTG 4 cut(s) 360, 1101, 1194, 1344
TseI GCWGC 4 cut(s) 5, 256, 877, 1069
TspDTI ATGAA 5 cut(s) 57, 428, 795, 1317, 1403
TspGWI ACGGA 2 cut(s) 526, 1004
TspRI CASTG 4 cut(s) 360, 1101, 1194, 1344
XapI RAATTY 4 cut(s) 427, 497, 669, 755
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 6 cut(s) 287, 360, 488, 531, 597, 1134
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.