Rorug06G0506400

4-coumarate--CoA ligase-like 9

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
62166942 .. 62168467
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0506400.1

Sequence Viewer

Length: 1470 bp
ATGGAGGATCAGCGTCGTCTCTGGATTGATATTGCTTCTATTAAGGATAACTTTGTTTCTGGACCTTGGATTGTATTTGGTGATTTCAATGCAATTCTTGGGGCTCATGAGAAAAAGGGTGGTGCGCCAATTTTTCAGCGATCTTGTGAGGAGTTCCAAGCTATGTCTGATATCTGTGAACTTATTCATATTGACTCTAAAGGGGCTGAATTTACTTGGGTTCGTCGGAGAGGTGTTAGGGGGAATGTAGAGGTAAGACTTGATTGTTGTCTAGCAAATCTCGCTTGGATGGATAGCTGGGATACGTTTGATTGCTGCACCTTACCACAGATATGCTCTGATCATAATCCATTACTTATGTCTTTTTCTAATGTTTTTGGGGCACATCAAAGTCTATTTCGGTTTCGGAGAATGTGGTTAGAGCATGGTAGCTTTAATGGGTTTGTCAAGCAATGTTGGGATGCAATTACTATGCACGGATGCCCTCTTACAATTTTGCAACATAAATTGAGAGTTTTGCGTCGAGCACTTCGGTCTTGGAATTGGGAAGTTTTTGGTAATGTTCACAGGCGTGTTGATTCGGACCTTGCAGATCTAGGTGCTCTTCAAGAACATATTTCTATTACTGGGGGTTCTGATGCAGATTTTACCAAGGAATGTGAGCTTCAGGCAAACTTGACTGAGTCCATGCGTTTACAAGAGATGTTTTGGAAGGAGAAATCTCGGTTGCGTTGGCTATCAGAGGGCGATCATAACTCATCTTTCTTCCATGCTATGTGTCGGGATCCACTTGCTATTCAGAATCATATTGTAGATTTTTATTCGAACCTCTTTGCTAATCATGCAGATTGTTATGATTCGGGTCTCATTAGCCGTGGCATTCCTTCTTTAGTAACTGTTGAGGAAAATGAGGCGCTAACAGCTATTCCATCACCAGAGGAAATCTTCTTGGCAATGAAGAATATGGACCCAGACAGTGCACCTGGACCTGACGGTTTTAATGGACATTTCTTTGTTTCTTGTTGGGAGATCGTGGGTGCATGTGTAATTGAGGCAGTTCAGTCTTTTTTCGAGCATGGTTCATTGCCACCTTCTTTTAATTCAAGCTTGATTATTCTTATTCCCAAGATGGATCATGCAGACTCTATTAAGCAATTTCGGCCTATTGCATTGGCCAATTTTGTATTCAAGATTATCCCAAAGATTATCTCTATCCGGCTAGCTTCCATTGCTTCACGGATTATTTCTCCTCAACAACATGCTTTCGTTCCAGGGCGGAACATAGCGGCCTGCATTATTACTACTTCAGAGGGTATTAATCTATTGGACTCCAAATGTCATGGTGGAAATGTTGCAATTAAAATGGATATTGCCAAAGCCTTTGATACTCTTTCCTGGGATTTCATTTTGAAGGTTTTGGAGGCCTTTGGCTTTCACCCTATTTTGTGCATTGGGTTAAGGTTTTATTGA

Protein Analysis

489

Amino Acids

55.26

Weight (kDa)

5.87

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 374 - 481 1.8e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 1276, 1286
AclWI GGATC 4 cut(s) 15, 779, 792, 1140
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 650, 1290
AgsI TTSAA 5 cut(s) 88, 608, 1104, 1189, 1411
AjnI CCWGG 3 cut(s) 982, 1270, 1394
AjuI GAANNNNNNNTTGG 2 cut(s) 1169, 1201
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 7 cut(s) 161, 297, 432, 664, 923, 1107, 1223
AluI AGCT 7 cut(s) 161, 297, 432, 664, 923, 1107, 1223
Alw21I GWGCWC 3 cut(s) 529, 604, 982
Alw26I GTCTC 2 cut(s) 23, 869
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 4 cut(s) 15, 779, 792, 1140
AoxI GGCC 4 cut(s) 1160, 1173, 1287, 1422
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 209
AseI ATTAAT 1 cut(s) 1317
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 127, 916
AspS9I GGNCC 4 cut(s) 62, 583, 967, 986
AsuHPI GGTGA 3 cut(s) 92, 924, 1427
AsuII TTCGAA 1 cut(s) 824
AsuNHI GCTAGC 1 cut(s) 1219
AvaII GGWCC 4 cut(s) 62, 583, 967, 986
BaeGI GKGCMC 2 cut(s) 385, 982
BalI TGGCCA 1 cut(s) 1175
BamHI GGATCC 1 cut(s) 784
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 3 cut(s) 529, 604, 982
BbvI GCAGC 1 cut(s) 302
BccI CCATC 3 cut(s) 283, 937, 1123
BceAI ACGGC 1 cut(s) 858
BciT130I CCWGG 3 cut(s) 984, 1272, 1396
BciVI GTATCC 1 cut(s) 295
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 23, 869
BfaI CTAG 3 cut(s) 272, 596, 1220
BfoI RGCGCY 1 cut(s) 917
BfuI GTATCC 1 cut(s) 295
BglII AGATCT 1 cut(s) 592
BisI GCNGC 2 cut(s) 316, 1287
BlsI GCNGC 2 cut(s) 317, 1288
Bme1390I CCNGG 3 cut(s) 984, 1272, 1396
Bme18I GGWCC 4 cut(s) 62, 583, 967, 986
BmgT120I GGNCC 4 cut(s) 62, 583, 967, 986
BmiI GGNNCC 2 cut(s) 786, 969
BmrFI CCNGG 3 cut(s) 984, 1272, 1396
BmrI ACTGGG 1 cut(s) 636
BmsI GCATC 3 cut(s) 451, 470, 628
BmtI GCTAGC 1 cut(s) 1223
BmuI ACTGGG 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 824
BsaBI GATNNNNATC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 5 cut(s) 65, 651, 874, 1271, 1395
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 4 cut(s) 458, 960, 1082, 1227
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 3 cut(s) 984, 1272, 1396
BseDI CCNNGG 5 cut(s) 65, 651, 874, 1271, 1395
BseGI GGATG 3 cut(s) 294, 466, 485
BseJI GATNNNNATC 1 cut(s) 345
BseMI GCAATG 4 cut(s) 458, 960, 1082, 1227
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 2 cut(s) 164, 1239
BseSI GKGCMC 2 cut(s) 385, 982
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 301
BshFI GGCC 4 cut(s) 1162, 1175, 1289, 1424
BsiHKAI GWGCWC 3 cut(s) 529, 604, 982
BsiSI CCGG 1 cut(s) 1216
BsmAI GTCTC 2 cut(s) 23, 869
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 879
BsnI GGCC 4 cut(s) 1162, 1175, 1289, 1424
Bso31I GGTCTC 1 cut(s) 869
Bsp119I TTCGAA 1 cut(s) 824
Bsp1286I GDGCHC 5 cut(s) 106, 385, 529, 604, 982
Bsp143I GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
BspACI CCGC 2 cut(s) 1276, 1286
BspANI GGCC 4 cut(s) 1162, 1175, 1289, 1424
BspCNI CTCAG 1 cut(s) 673
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 786, 969
BspOI GCTAGC 1 cut(s) 1223
BspPI GGATC 4 cut(s) 15, 779, 792, 1140
BspQI GCTCTTC 1 cut(s) 609
BspT104I TTCGAA 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 869
BsrDI GCAATG 4 cut(s) 458, 960, 1082, 1227
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 5 cut(s) 65, 651, 874, 1271, 1395
BssMI GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
BssT1I CCWWGG 2 cut(s) 65, 651
Bst2UI CCWGG 3 cut(s) 984, 1272, 1396
Bst4CI ACNGT 3 cut(s) 898, 977, 995
Bst6I CTCTTC 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 824
BstC8I GCNNGC 2 cut(s) 1221, 1291
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 874
BstF5I GGATG 3 cut(s) 294, 466, 485
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 2 cut(s) 127, 916
BstKTI GATC 8 cut(s) 10, 143, 343, 595, 751, 787, 1032, 1135
BstMAI GTCTC 2 cut(s) 23, 869
BstMBI GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 281, 842, 920, 1159, 1229
BstNI CCWGG 3 cut(s) 984, 1272, 1396
BstNSI RCATGY 2 cut(s) 1044, 1262
BstSCI CCNGG 3 cut(s) 982, 1270, 1394
BstSLI GKGCMC 2 cut(s) 385, 982
BstV1I GCAGC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 592, 784
BstYI RGATCY 2 cut(s) 592, 784
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 4 cut(s) 1162, 1175, 1289, 1424
BtgI CCRYGG 1 cut(s) 874
BtsCI GGATG 3 cut(s) 294, 466, 485
BtsIMutI CAGTG 1 cut(s) 982
Cac8I GCNNGC 2 cut(s) 1221, 1291
CciI TCATGA 1 cut(s) 106
CfoI GCGC 2 cut(s) 127, 916
Cfr13I GGNCC 4 cut(s) 62, 583, 967, 986
CseI GACGC 2 cut(s) 2, 509
DdeI CTNAG 1 cut(s) 681
DpnI GATC 8 cut(s) 9, 142, 342, 594, 750, 786, 1031, 1134
DpnII GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
EciI GGCGGA 1 cut(s) 1291
Eco130I CCWWGG 2 cut(s) 65, 651
Eco147I AGGCCT 1 cut(s) 1424
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 869
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 4 cut(s) 62, 583, 967, 986
Eco57I CTGAAG 2 cut(s) 650, 1290
EcoRII CCWGG 3 cut(s) 982, 1270, 1394
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 65, 651
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 2 cut(s) 65, 651
Esp3I CGTCTC 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 316, 1287
FokI GGATG 3 cut(s) 301, 473, 492
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 316, 1287
FspBI CTAG 3 cut(s) 272, 596, 1220
GlaI GCGC 2 cut(s) 126, 915
GluI GCNGC 2 cut(s) 316, 1287
GsaI CCCAGC 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 4 cut(s) 1162, 1175, 1289, 1424
HapII CCGG 1 cut(s) 1216
HgaI GACGC 2 cut(s) 2, 509
HhaI GCGC 2 cut(s) 127, 916
Hin6I GCGC 2 cut(s) 125, 914
HinP1I GCGC 2 cut(s) 125, 914
HindIII AAGCTT 1 cut(s) 1105
HinfI GANTC 7 cut(s) 194, 578, 683, 802, 857, 1142, 1328
HpaII CCGG 1 cut(s) 1216
HphI GGTGA 3 cut(s) 92, 924, 1427
Hpy166II GTNNAC 4 cut(s) 179, 565, 695, 980
Hpy188I TCNGA 9 cut(s) 169, 228, 340, 408, 583, 637, 742, 801, 1309
Hpy188III TCNNGA 6 cut(s) 22, 60, 107, 608, 782, 1189
Hpy8I GTNNAC 4 cut(s) 179, 565, 695, 980
Hpy99I CGWCG 3 cut(s) 18, 228, 525
HpyAV CCTTC 4 cut(s) 706, 894, 1101, 1405
HpyCH4III ACNGT 3 cut(s) 898, 977, 995
HpyCH4IV ACGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 842, 920, 1159, 1229
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 1 cut(s) 305
HspAI GCGC 2 cut(s) 125, 914
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
LguI GCTCTTC 1 cut(s) 609
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 3 cut(s) 451, 470, 628
MaeI CTAG 3 cut(s) 272, 596, 1220
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 892
MalI GATC 8 cut(s) 9, 142, 342, 594, 750, 786, 1031, 1134
MboI GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
MboII GAAGA 4 cut(s) 596, 757, 937, 970
MflI RGATCY 2 cut(s) 592, 784
MhlI GDGCHC 5 cut(s) 106, 385, 529, 604, 982
MlsI TGGCCA 1 cut(s) 1175
MluNI TGGCCA 1 cut(s) 1175
MlyI GAGTC 4 cut(s) 188, 692, 1136, 1322
MmeI TCCRAC 1 cut(s) 206
Mox20I TGGCCA 1 cut(s) 1175
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 8 cut(s) 42, 435, 999, 1098, 1149, 1317, 1359, 1457
MslI CAYNNNNRTG 2 cut(s) 331, 570
Msp20I TGGCCA 1 cut(s) 1175
MspI CCGG 1 cut(s) 1216
MspR9I CCNGG 3 cut(s) 984, 1272, 1396
Mva1269I GAATGC 1 cut(s) 879
MvaI CCWGG 3 cut(s) 984, 1272, 1396
MwoI GCNNNNNNNGC 5 cut(s) 281, 842, 920, 1159, 1229
NdeII GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
NheI GCTAGC 1 cut(s) 1219
NlaIV GGNNCC 2 cut(s) 786, 969
NspI RCATGY 2 cut(s) 1044, 1262
NspV TTCGAA 1 cut(s) 824
OliI CACNNNNGTG 1 cut(s) 570
PagI TCATGA 1 cut(s) 106
PceI AGGCCT 1 cut(s) 1424
PciSI GCTCTTC 1 cut(s) 609
PctI GAATGC 1 cut(s) 879
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 578, 802, 857
PflFI GACNNNGTC 1 cut(s) 682
PkrI GCNGC 2 cut(s) 317, 1288
PleI GAGTC 4 cut(s) 188, 691, 1136, 1322
PpsI GAGTC 4 cut(s) 188, 691, 1136, 1322
PshBI ATTAAT 1 cut(s) 1317
Psp6I CCWGG 3 cut(s) 982, 1270, 1394
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 3 cut(s) 982, 1270, 1394
PspN4I GGNNCC 2 cut(s) 786, 969
PspPI GGNCC 4 cut(s) 62, 583, 967, 986
PsuI RGATCY 2 cut(s) 592, 784
PsyI GACNNNGTC 1 cut(s) 682
RseI CAYNNNNRTG 2 cut(s) 331, 570
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 8 cut(s) 42, 435, 999, 1098, 1149, 1317, 1359, 1457
SatI GCNGC 2 cut(s) 316, 1287
Sau3AI GATC 8 cut(s) 7, 140, 340, 592, 748, 784, 1029, 1132
Sau96I GGNCC 4 cut(s) 62, 583, 967, 986
SchI GAGTC 4 cut(s) 188, 692, 1136, 1322
ScrFI CCNGG 3 cut(s) 984, 1272, 1396
SduI GDGCHC 5 cut(s) 106, 385, 529, 604, 982
SfaNI GCATC 3 cut(s) 451, 470, 628
SfuI TTCGAA 1 cut(s) 824
SinI GGWCC 4 cut(s) 62, 583, 967, 986
SmiMI CAYNNNNRTG 2 cut(s) 331, 570
SseBI AGGCCT 1 cut(s) 1424
SsiI CCGC 2 cut(s) 1276, 1286
SspMI CTAG 3 cut(s) 272, 596, 1220
StuI AGGCCT 1 cut(s) 1424
StyD4I CCNGG 3 cut(s) 982, 1270, 1394
StyI CCWWGG 2 cut(s) 65, 651
TaaI ACNGT 3 cut(s) 898, 977, 995
TaiI ACGT 1 cut(s) 308
TaqI TCGA 3 cut(s) 523, 824, 1071
TaqII GACCGA 1 cut(s) 522
TauI GCSGC 1 cut(s) 1289
TfiI GAWTC 3 cut(s) 578, 802, 857
Tru1I TTAA 8 cut(s) 42, 435, 999, 1098, 1149, 1317, 1359, 1457
Tru9I TTAA 8 cut(s) 42, 435, 999, 1098, 1149, 1317, 1359, 1457
TscAI CASTG 1 cut(s) 982
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 176, 971, 1071, 1393
TspGWI ACGGA 2 cut(s) 492, 1252
TspRI CASTG 1 cut(s) 982
Tth111I GACNNNGTC 1 cut(s) 682
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 4 cut(s) 62, 583, 967, 986
VspI ATTAAT 1 cut(s) 1317
XapI RAATTY 1 cut(s) 209
XceI RCATGY 2 cut(s) 1044, 1262
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 3 cut(s) 272, 596, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.