pycom16g09580

AMP-binding enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
6394304 .. 6395530
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09580.1

Sequence Viewer

Length: 1227 bp
ATGGCGACTCAAGAGAAGGGCAGCAGCATTGATCCAAAGAGTGGGTTTTGCTCAAAGACCAAGACCTTTCACAGCCTGAGACCCAGATCCCAACCCCCTCCTCAAACCACGCCTCTTTCCCTCACCCACTACCTCCTCTCCCGCCTCCACCACTCCCCTCCCCTGCCTTCCACTCCCGCCCTCCTCGACGCCGCCAACGGCCATCATATTCTCTACCCCGAGTTCAATTTTCGAGTCCGAACCCTCGCCGCCTCGCTTCAATCCCAGCTCGGCCTCTCCCACGGCCAATGCGCCTTCGTTCTCTCCCCCAACTCCCTCCACCTCCCCATCCTCCACCTCTCTCTCCTCTCCCTCGGCGTTATCGTCTCCCCTTCCAACCCCGCCAGCTCCAATTCCGAAATCTCCCACCAAATCAGCATATGCAGACCCACCGTCGCATTCGCCACCACTGCCACCGCTCACAAAATCCCTAACTCCCTCCGCCTTGGGACCATCCTCCTCGACTCGGCCGAGTTCGAGTCCATGATGATGACCTGTCCAAGTTCGGCCGAATCGCTTCGAATTGAAGTGAGCCAATCGGACACCGCTACGATTCTCTACTCATCGGGGACCACCGGGAGGGTCAAGGGCGTGGAGTTTACTCACCGGCACTGGATATGGATGATGGCGGGCATCCACGCGGTTCGAAACGCGTCCGCTCCACACGCTGTGTGTCTCTGTACGGTGCCGTTTTTCCACTCGTACGGGTTCGCGTACTGCTTCATAGTTTTGTTGACGGGGGACACGCTGGCGTTCATGGGAAGGTTCGATTTGAAGGTGATGATGAGATCCATCGAGCGGTTCCGAATCACCGACGTGGCCTGTGCCCCGCCTGTGGTCGTGGCCTTGTTGAAGCACGGGGACATAAACGTGATGGACGGCTACGATTTGAGCTCCCTGCAAGTGATCGGCTGCGGCGGTGCTCCGCTGGCGAAGAGTGTGATCGAGAAGCTGAGGAAGTGGCTGCCCCACGTACAAGTCCCACAGGTTGGTGCAATGATGTGTAATTTTCAGATGGGTTTAACGACGTTTAATGTGTTGTCGTTTTTGTTCAACAAAAATTATGTGTTATCGTTTTGTCCAACTTTGGGCCGTGTGGTGGGTTGCGCAGGGATATGGGATGACGGAGATGACGGGCCGAGTATGTGGCCCGGTGGGCCCGGAAGAAACCCGAGTGGAAGGAGCTAA

Protein Analysis

409

Amino Acids

44.27

Weight (kDa)

8.83

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 56 - 340 7.4e-54 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1147
AccB1I GGYRCC 1 cut(s) 724
AccB7I CCANNNNNTGG 2 cut(s) 41, 1028
AccBSI CCGCTC 3 cut(s) 458, 698, 838
AccII CGCG 3 cut(s) 680, 692, 752
AclWI GGATC 3 cut(s) 26, 81, 822
AcoI YGGCCR 4 cut(s) 199, 283, 507, 546
AcyI GRCGYC 1 cut(s) 189
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 4 cut(s) 721, 743, 755, 1014
AfiI CCNNNNNNNGG 8 cut(s) 41, 505, 618, 837, 874, 1028, 1127, 1138
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 6 cut(s) 226, 260, 566, 814, 892, 1093
AhdI GACNNNNNGTC 1 cut(s) 431
AjiI CACGTC 1 cut(s) 856
AleI CACNNNNGTG 1 cut(s) 854
AluBI AGCT 5 cut(s) 268, 387, 933, 991, 1224
AluI AGCT 5 cut(s) 268, 387, 933, 991, 1224
Alw21I GWGCWC 2 cut(s) 935, 964
Alw26I GTCTC 3 cut(s) 73, 370, 719
AlwI GGATC 3 cut(s) 26, 81, 822
Ama87I CYCGRG 2 cut(s) 218, 1210
ApaI GGGCCC 1 cut(s) 1200
ApeKI GCWGC 4 cut(s) 21, 24, 951, 1003
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 2 cut(s) 293, 1148
AspS9I GGNCC 7 cut(s) 489, 609, 1129, 1175, 1188, 1196, 1197
AsuC2I CCSGG 3 cut(s) 616, 1191, 1200
AsuHPI GGTGA 4 cut(s) 115, 635, 829, 841
AsuII TTCGAA 2 cut(s) 559, 685
AvaI CYCGRG 2 cut(s) 218, 1210
AvaII GGWCC 2 cut(s) 489, 609
BaeGI GKGCMC 2 cut(s) 868, 1200
BanI GGYRCC 1 cut(s) 724
BanII GRGCYC 2 cut(s) 935, 1200
Bbv12I GWGCWC 2 cut(s) 935, 964
BbvCI CCTCAGC 1 cut(s) 992
BbvI GCAGC 4 cut(s) 33, 36, 938, 990
BccI CCATC 7 cut(s) 210, 335, 500, 658, 839, 907, 1048
BceAI ACGGC 5 cut(s) 214, 298, 712, 934, 1116
BcnI CCSGG 3 cut(s) 616, 1191, 1200
BcoDI GTCTC 3 cut(s) 73, 370, 719
BglI GCCNNNNNGGC 1 cut(s) 1195
BisI GCNGC 7 cut(s) 22, 25, 192, 249, 952, 955, 1004
BlsI GCNGC 7 cut(s) 23, 26, 193, 250, 953, 956, 1005
Bme1390I CCNGG 3 cut(s) 616, 1191, 1200
Bme18I GGWCC 2 cut(s) 489, 609
BmeRI GACNNNNNGTC 1 cut(s) 431
BmeT110I CYCGRG 2 cut(s) 218, 1210
BmgBI CACGTC 1 cut(s) 856
BmgT120I GGNCC 7 cut(s) 489, 609, 1129, 1175, 1188, 1196, 1197
BmiI GGNNCC 5 cut(s) 490, 610, 726, 842, 1198
BmrFI CCNGG 3 cut(s) 616, 1191, 1200
BmsI GCATC 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 992
Bpu14I TTCGAA 2 cut(s) 559, 685
BpuMI CCSGG 3 cut(s) 616, 1191, 1200
BsaAI YACGTR 1 cut(s) 1012
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 280, 352, 484
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 8 cut(s) 41, 505, 618, 837, 874, 1028, 1127, 1138
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 1 cut(s) 656
Bse3DI GCAATG 1 cut(s) 1041
BseDI CCNNGG 3 cut(s) 280, 352, 484
BseGI GGATG 5 cut(s) 327, 492, 666, 672, 1165
BseLI CCNNNNNNNGG 8 cut(s) 41, 505, 618, 837, 874, 1028, 1127, 1138
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 2 cut(s) 68, 983
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 5 cut(s) 90, 125, 173, 335, 488
BseSI GKGCMC 2 cut(s) 868, 1200
BseX3I CGGCCG 2 cut(s) 507, 546
BseXI GCAGC 4 cut(s) 33, 36, 938, 990
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 3 cut(s) 680, 692, 752
Bsh1285I CGRYCG 2 cut(s) 510, 549
BshNI GGYRCC 1 cut(s) 724
BsiEI CGRYCG 2 cut(s) 510, 549
BsiHKAI GWGCWC 2 cut(s) 935, 964
BsiHKCI CYCGRG 2 cut(s) 218, 1210
BsiSI CCGG 4 cut(s) 615, 646, 1191, 1200
BsiWI CGTACG 1 cut(s) 741
BslFI GGGAC 5 cut(s) 502, 622, 794, 914, 1004
BslI CCNNNNNNNGG 8 cut(s) 41, 505, 618, 837, 874, 1028, 1127, 1138
BsmAI GTCTC 3 cut(s) 73, 370, 719
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 5 cut(s) 502, 622, 794, 914, 1004
BsmI GAATGC 1 cut(s) 437
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 2 cut(s) 218, 1210
Bsp119I TTCGAA 2 cut(s) 559, 685
Bsp120I GGGCCC 1 cut(s) 1196
Bsp1286I GDGCHC 4 cut(s) 868, 935, 964, 1200
Bsp143I GATC 5 cut(s) 31, 86, 827, 945, 981
BspCNI CTCAG 2 cut(s) 69, 984
BspFNI CGCG 3 cut(s) 680, 692, 752
BspLI GGNNCC 5 cut(s) 490, 610, 726, 842, 1198
BspPI GGATC 3 cut(s) 26, 81, 822
BspT104I TTCGAA 2 cut(s) 559, 685
BspT107I GGYRCC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 73
BsrBI CCGCTC 3 cut(s) 458, 698, 838
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 1 cut(s) 645
BsrI ACTGG 1 cut(s) 656
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 3 cut(s) 280, 352, 484
BssMI GATC 5 cut(s) 31, 86, 827, 945, 981
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 484
Bst4CI ACNGT 2 cut(s) 433, 724
Bst6I CTCTTC 1 cut(s) 968
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 1012
BstBI TTCGAA 2 cut(s) 559, 685
BstC8I GCNNGC 4 cut(s) 385, 670, 789, 969
BstDEI CTNAG 2 cut(s) 77, 992
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 5 cut(s) 327, 492, 666, 672, 1165
BstFNI CGCG 3 cut(s) 680, 692, 752
BstHHI GCGC 2 cut(s) 293, 1148
BstKTI GATC 5 cut(s) 34, 89, 830, 948, 984
BstMAI GTCTC 3 cut(s) 73, 370, 719
BstMBI GATC 5 cut(s) 31, 86, 827, 945, 981
BstMCI CGRYCG 2 cut(s) 510, 549
BstMWI GCNNNNNNNGC 4 cut(s) 449, 704, 968, 1195
BstSCI CCNGG 3 cut(s) 614, 1189, 1198
BstSLI GKGCMC 2 cut(s) 868, 1200
BstUI CGCG 3 cut(s) 680, 692, 752
BstV1I GCAGC 4 cut(s) 33, 36, 938, 990
BstX2I RGATCY 2 cut(s) 86, 827
BstYI RGATCY 2 cut(s) 86, 827
BstZI CGGCCG 2 cut(s) 507, 546
BtgI CCRYGG 1 cut(s) 280
BtrI CACGTC 1 cut(s) 856
BtsCI GGATG 5 cut(s) 327, 492, 666, 672, 1165
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 447, 649
Cac8I GCNNGC 4 cut(s) 385, 670, 789, 969
CfoI GCGC 2 cut(s) 293, 1148
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 7 cut(s) 489, 609, 1129, 1175, 1188, 1196, 1197
CseI GACGC 2 cut(s) 197, 681
Csp6I GTAC 4 cut(s) 720, 742, 754, 1013
CviAII CATG 2 cut(s) 523, 796
CviQI GTAC 4 cut(s) 720, 742, 754, 1013
DdeI CTNAG 2 cut(s) 77, 992
DpnI GATC 5 cut(s) 33, 88, 829, 947, 983
DpnII GATC 5 cut(s) 31, 86, 827, 945, 981
DraIII CACNNNGTG 1 cut(s) 709
DriI GACNNNNNGTC 1 cut(s) 431
EaeI YGGCCR 4 cut(s) 199, 283, 507, 546
EagI CGGCCG 2 cut(s) 507, 546
Eam1104I CTCTTC 1 cut(s) 968
Eam1105I GACNNNNNGTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 968
EciI GGCGGA 1 cut(s) 470
Ecl136II GAGCTC 1 cut(s) 933
EclXI CGGCCG 2 cut(s) 507, 546
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 935, 1200
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 489, 609
Eco52I CGGCCG 2 cut(s) 507, 546
Eco53kI GAGCTC 1 cut(s) 933
Eco88I CYCGRG 2 cut(s) 218, 1210
EcoICRI GAGCTC 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 2 cut(s) 935, 1200
ErhI CCWWGG 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 2 cut(s) 526, 799
FaqI GGGAC 5 cut(s) 502, 622, 794, 914, 1004
FatI CATG 2 cut(s) 522, 795
FauI CCCGC 5 cut(s) 149, 184, 388, 661, 876
FauNDI CATATG 1 cut(s) 419
Fnu4HI GCNGC 7 cut(s) 22, 25, 192, 249, 952, 955, 1004
FokI GGATG 5 cut(s) 314, 479, 659, 673, 1172
FriOI GRGCYC 2 cut(s) 935, 1200
Fsp4HI GCNGC 7 cut(s) 22, 25, 192, 249, 952, 955, 1004
FspI TGCGCA 1 cut(s) 1147
GlaI GCGC 2 cut(s) 292, 1147
GluI GCNGC 7 cut(s) 22, 25, 192, 249, 952, 955, 1004
GsaI CCCAGC 1 cut(s) 268
HapII CCGG 4 cut(s) 615, 646, 1191, 1200
HgaI GACGC 2 cut(s) 197, 681
HhaI GCGC 2 cut(s) 293, 1148
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 526, 799
Hin6I GCGC 2 cut(s) 291, 1146
HinP1I GCGC 2 cut(s) 291, 1146
HincII GTYRAC 1 cut(s) 774
HindII GTYRAC 1 cut(s) 774
HinfI GANTC 7 cut(s) 7, 234, 503, 518, 551, 592, 846
HpaII CCGG 4 cut(s) 615, 646, 1191, 1200
HphI GGTGA 4 cut(s) 115, 635, 829, 841
Hpy166II GTNNAC 2 cut(s) 639, 774
Hpy188I TCNGA 5 cut(s) 239, 397, 580, 845, 1053
Hpy188III TCNNGA 2 cut(s) 11, 985
Hpy8I GTNNAC 2 cut(s) 639, 774
Hpy99I CGWCG 4 cut(s) 191, 437, 857, 1069
HpyAV CCTTC 7 cut(s) 10, 177, 304, 381, 795, 808, 1212
HpyCH4III ACNGT 2 cut(s) 433, 724
HpyCH4IV ACGT 4 cut(s) 855, 909, 1011, 1067
HpyCH4V TGCA 3 cut(s) 423, 940, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 704, 968, 1195
HpyF3I CTNAG 2 cut(s) 77, 992
HpySE526I ACGT 4 cut(s) 855, 909, 1011, 1067
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 526, 799
HspAI GCGC 2 cut(s) 291, 1146
Kzo9I GATC 5 cut(s) 31, 86, 827, 945, 981
LmnI GCTCC 5 cut(s) 392, 703, 938, 967, 1221
Lsp1109I GCAGC 4 cut(s) 33, 36, 938, 990
LweI GCATC 1 cut(s) 681
MaeII ACGT 4 cut(s) 855, 909, 1011, 1067
MalI GATC 5 cut(s) 33, 88, 829, 947, 983
MbiI CCGCTC 3 cut(s) 458, 698, 838
MboI GATC 5 cut(s) 31, 86, 827, 945, 981
MboII GAAGA 2 cut(s) 985, 1215
MflI RGATCY 2 cut(s) 86, 827
MhlI GDGCHC 4 cut(s) 868, 935, 964, 1200
MluCI AATT 5 cut(s) 226, 391, 561, 1045, 1099
MluI ACGCGT 1 cut(s) 690
MlyI GAGTC 3 cut(s) 243, 497, 527
MmeI TCCRAC 2 cut(s) 399, 1145
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 1061, 1071
MslI CAYNNNNRTG 3 cut(s) 527, 854, 908
MspA1I CMGCKG 1 cut(s) 967
MspI CCGG 4 cut(s) 615, 646, 1191, 1200
MspR9I CCNGG 3 cut(s) 616, 1191, 1200
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 3 cut(s) 680, 692, 752
MwoI GCNNNNNNNGC 4 cut(s) 449, 704, 968, 1195
NciI CCSGG 3 cut(s) 616, 1191, 1200
NdeI CATATG 1 cut(s) 419
NdeII GATC 5 cut(s) 31, 86, 827, 945, 981
NlaIII CATG 2 cut(s) 526, 799
NlaIV GGNNCC 5 cut(s) 490, 610, 726, 842, 1198
NmeAIII GCCGAG 5 cut(s) 249, 333, 485, 535, 1203
NsbI TGCGCA 1 cut(s) 1147
NspV TTCGAA 2 cut(s) 559, 685
OliI CACNNNNGTG 1 cut(s) 854
PcsI WCGNNNNNNNCGW 2 cut(s) 360, 507
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 551, 592, 846
Pfl23II CGTACG 1 cut(s) 741
PflMI CCANNNNNTGG 2 cut(s) 41, 1028
PkrI GCNGC 7 cut(s) 23, 26, 193, 250, 953, 956, 1005
PleI GAGTC 3 cut(s) 242, 497, 526
PpsI GAGTC 3 cut(s) 242, 497, 526
Ppu21I YACGTR 1 cut(s) 1012
Psp124BI GAGCTC 1 cut(s) 935
PspFI CCCAGC 1 cut(s) 264
PspLI CGTACG 1 cut(s) 741
PspN4I GGNNCC 5 cut(s) 490, 610, 726, 842, 1198
PspOMI GGGCCC 1 cut(s) 1196
PspPI GGNCC 7 cut(s) 489, 609, 1129, 1175, 1188, 1196, 1197
PsuI RGATCY 2 cut(s) 86, 827
RsaI GTAC 4 cut(s) 721, 743, 755, 1014
RsaNI GTAC 4 cut(s) 720, 742, 754, 1013
RseI CAYNNNNRTG 3 cut(s) 527, 854, 908
SacI GAGCTC 1 cut(s) 935
SaqAI TTAA 2 cut(s) 1061, 1071
SatI GCNGC 7 cut(s) 22, 25, 192, 249, 952, 955, 1004
Sau3AI GATC 5 cut(s) 31, 86, 827, 945, 981
Sau96I GGNCC 7 cut(s) 489, 609, 1129, 1175, 1188, 1196, 1197
SchI GAGTC 3 cut(s) 243, 497, 527
ScrFI CCNGG 3 cut(s) 616, 1191, 1200
SduI GDGCHC 4 cut(s) 868, 935, 964, 1200
SfaNI GCATC 1 cut(s) 681
SfiI GGCCNNNNNGGCC 1 cut(s) 1195
SfuI TTCGAA 2 cut(s) 559, 685
SinI GGWCC 2 cut(s) 489, 609
SmiMI CAYNNNNRTG 3 cut(s) 527, 854, 908
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 5 cut(s) 226, 391, 561, 1045, 1099
SstI GAGCTC 1 cut(s) 935
StyD4I CCNGG 3 cut(s) 614, 1189, 1198
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 2 cut(s) 433, 724
TaiI ACGT 4 cut(s) 858, 912, 1014, 1070
TaqI TCGA 9 cut(s) 186, 232, 501, 516, 559, 685, 807, 834, 984
TasI AATT 5 cut(s) 226, 391, 561, 1045, 1099
TauI GCSGC 3 cut(s) 194, 251, 957
TfiI GAWTC 3 cut(s) 551, 592, 846
Tru1I TTAA 2 cut(s) 1061, 1071
Tru9I TTAA 2 cut(s) 1061, 1071
TscAI CASTG 2 cut(s) 454, 656
TseI GCWGC 4 cut(s) 21, 24, 951, 1003
TspDTI ATGAA 2 cut(s) 751, 784
TspGWI ACGGA 1 cut(s) 1179
TspRI CASTG 2 cut(s) 454, 656
Van91I CCANNNNNTGG 2 cut(s) 41, 1028
VpaK11BI GGWCC 2 cut(s) 489, 609
XmnI GAANNNNTTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.