4-coumarate--CoA ligase-like 9
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63380 |
| fragaria_vesca | FvH4_4g24170 FvH4_5g07750 FvH4_5g07750 FvH4_5g07750 |
| malus_domestica | MD06G1147300.v1.1 MD06G1147500.v1.1 MD13G1113700.v1.1 MD14G1161200.v1.1 MD14G1161300.v1.1 MD16G1112900.v1.1 MD16G1113000.v1.1 |
| prunus_persica | Prupe.1G232500_v2.0.a1 Prupe.5G154000_v2.0.a1 Prupe.5G154100_v2.0.a1 |
| pyrus_communis | pycom06g13680 pycom06g13690 pycom13g09900 pycom14g13410 pycom16g09570 pycom16g09580 |
| rosa_chinensis | RchiOBHm_Chr4g0430951 RchiOBHm_Chr7g0190671 RchiOBHm_Chr7g0190681 |
| rosa_laevigata | RLG00000004504 RLG00000006935 |
| rosa_multiflora | Rmu_co8020444.1_g000001 Rmu_sc0006263.1_g000015 Rmu_sc0006709.1_g000003 Rmu_sc0013571.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00264410 Rroxscaffold_5G00372640 |
| rosa_rugosa | Rorug04G0247400 Rorug06G0506300 Rorug06G0506400 |
| rosa_samantha | Rh4AG303200 Rh4AG304100 Rh4BG311400 Rh4CG327700 Rh4DG307500 Rh7AG112900 Rh7BG115400 Rh7CG117900 Rh7DG116800 |
| rosa_wichuraiana | Rw4G026360 Rw7G009850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1381 |
| AccB1I | GGYRCC | 2 cut(s) | 620, 1381 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 27 |
| AccBSI | CCGCTC | 4 cut(s) | 45, 278, 464, 829 |
| AccII | CGCG | 3 cut(s) | 167, 702, 980 |
| AclWI | GGATC | 3 cut(s) | 29, 38, 553 |
| AcoI | YGGCCR | 3 cut(s) | 232, 628, 1189 |
| AcuI | CTGAAG | 1 cut(s) | 1116 |
| AcvI | CACGTG | 2 cut(s) | 295, 766 |
| AcyI | GRCGYC | 2 cut(s) | 192, 363 |
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 4 cut(s) | 218, 869, 1367, 1383 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 27, 44, 88, 569, 864, 1065, 1169 |
| AflII | CTTAAG | 1 cut(s) | 1624 |
| AflIII | ACRYGT | 2 cut(s) | 765, 1576 |
| AgsI | TTSAA | 2 cut(s) | 1291, 1412 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 89 |
| AjiI | CACGTC | 2 cut(s) | 328, 1577 |
| AjnI | CCWGG | 3 cut(s) | 414, 504, 1186 |
| AluBI | AGCT | 7 cut(s) | 472, 487, 879, 928, 951, 1391, 1636 |
| AluI | AGCT | 7 cut(s) | 472, 487, 879, 928, 951, 1391, 1636 |
| Alw21I | GWGCWC | 3 cut(s) | 339, 489, 1638 |
| Alw26I | GTCTC | 4 cut(s) | 742, 803, 897, 1259 |
| AlwI | GGATC | 3 cut(s) | 29, 38, 553 |
| Ama87I | CYCGRG | 1 cut(s) | 515 |
| ApeKI | GCWGC | 5 cut(s) | 694, 751, 1070, 1210, 1523 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 717, 749, 802, 834 |
| AscI | GGCGCGCC | 1 cut(s) | 978 |
| Asp718I | GGTACC | 1 cut(s) | 1381 |
| AspLEI | GCGC | 4 cut(s) | 169, 702, 980, 982 |
| AspS9I | GGNCC | 7 cut(s) | 91, 264, 393, 418, 855, 1123, 1217 |
| AsuC2I | CCSGG | 2 cut(s) | 682, 1282 |
| AsuHPI | GGTGA | 7 cut(s) | 118, 418, 504, 647, 818, 928, 1310 |
| AsuII | TTCGAA | 1 cut(s) | 840 |
| AvaI | CYCGRG | 1 cut(s) | 515 |
| AvaII | GGWCC | 5 cut(s) | 91, 264, 393, 418, 1217 |
| BanI | GGYRCC | 2 cut(s) | 620, 1381 |
| BanII | GRGCYC | 3 cut(s) | 489, 687, 1638 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 209, 241 |
| BbrPI | CACGTG | 2 cut(s) | 295, 766 |
| BbsI | GAAGAC | 1 cut(s) | 1298 |
| Bbv12I | GWGCWC | 3 cut(s) | 339, 489, 1638 |
| BbvCI | CCTCAGC | 1 cut(s) | 851 |
| BbvI | GCAGC | 5 cut(s) | 681, 738, 1082, 1197, 1510 |
| BccI | CCATC | 5 cut(s) | 131, 446, 796, 817, 1425 |
| BceAI | ACGGC | 4 cut(s) | 9, 842, 883, 1644 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 649, 683 |
| BciT130I | CCWGG | 3 cut(s) | 416, 506, 1188 |
| BciVI | GTATCC | 2 cut(s) | 1040, 1461 |
| BclI | TGATCA | 1 cut(s) | 1359 |
| BcnI | CCSGG | 2 cut(s) | 682, 1282 |
| BcoDI | GTCTC | 4 cut(s) | 742, 803, 897, 1259 |
| BfaI | CTAG | 2 cut(s) | 677, 1656 |
| BfmI | CTRYAG | 1 cut(s) | 1524 |
| BfrI | CTTAAG | 1 cut(s) | 1624 |
| BfuI | GTATCC | 2 cut(s) | 1040, 1461 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1197 |
| BglII | AGATCT | 1 cut(s) | 1620 |
| BlpI | GCTNAGC | 1 cut(s) | 1129 |
| Bme1390I | CCNGG | 5 cut(s) | 416, 506, 682, 1188, 1282 |
| Bme18I | GGWCC | 5 cut(s) | 91, 264, 393, 418, 1217 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 89 |
| BmeT110I | CYCGRG | 1 cut(s) | 515 |
| BmgBI | CACGTC | 2 cut(s) | 328, 1577 |
| BmgT120I | GGNCC | 7 cut(s) | 91, 264, 393, 418, 855, 1123, 1217 |
| BmiI | GGNNCC | 7 cut(s) | 93, 266, 394, 622, 686, 1383, 1401 |
| BmrFI | CCNGG | 5 cut(s) | 416, 506, 682, 1188, 1282 |
| BmrI | ACTGGG | 1 cut(s) | 1074 |
| BmsI | GCATC | 2 cut(s) | 837, 1423 |
| BmuI | ACTGGG | 1 cut(s) | 1074 |
| BpiI | GAAGAC | 1 cut(s) | 1298 |
| BpmI | CTGGAG | 1 cut(s) | 1593 |
| Bpu10I | CCTNAGC | 1 cut(s) | 851 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1129 |
| Bpu14I | TTCGAA | 1 cut(s) | 840 |
| BpuMI | CCSGG | 2 cut(s) | 682, 1282 |
| Bsa29I | ATCGAT | 1 cut(s) | 33 |
| BsaAI | YACGTR | 3 cut(s) | 295, 766, 1240 |
| BsaHI | GRCGYC | 2 cut(s) | 192, 363 |
| BsaI | GGTCTC | 2 cut(s) | 803, 1259 |
| BsaJI | CCNNGG | 5 cut(s) | 477, 813, 858, 1269, 1479 |
| BsaWI | WCCGGW | 3 cut(s) | 88, 261, 1169 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 27, 44, 88, 569, 864, 1065, 1169 |
| Bse118I | RCCGGY | 2 cut(s) | 626, 886 |
| Bse1I | ACTGG | 1 cut(s) | 1069 |
| Bse3DI | GCAATG | 1 cut(s) | 1425 |
| BseBI | CCWGG | 3 cut(s) | 416, 506, 1188 |
| BseCI | ATCGAT | 1 cut(s) | 33 |
| BseDI | CCNNGG | 5 cut(s) | 477, 813, 858, 1269, 1479 |
| BseGI | GGATG | 6 cut(s) | 487, 548, 614, 974, 1089, 1417 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 27, 44, 88, 569, 864, 1065, 1169 |
| BseMI | GCAATG | 1 cut(s) | 1425 |
| BseMII | CTCAG | 9 cut(s) | 842, 947, 961, 993, 1005, 1254, 1290, 1383, 1509 |
| BseNI | ACTGG | 1 cut(s) | 1069 |
| BsePI | GCGCGC | 1 cut(s) | 978 |
| BseRI | GAGGAG | 2 cut(s) | 137, 341 |
| BseX3I | CGGCCG | 1 cut(s) | 628 |
| BseXI | GCAGC | 5 cut(s) | 681, 738, 1082, 1197, 1510 |
| BseYI | CCCAGC | 2 cut(s) | 20, 1387 |
| BsgI | GTGCAG | 1 cut(s) | 1061 |
| Bsh1236I | CGCG | 3 cut(s) | 167, 702, 980 |
| Bsh1285I | CGRYCG | 2 cut(s) | 165, 631 |
| BshNI | GGYRCC | 2 cut(s) | 620, 1381 |
| BshVI | ATCGAT | 1 cut(s) | 33 |
| BsiEI | CGRYCG | 2 cut(s) | 165, 631 |
| BsiHKAI | GWGCWC | 3 cut(s) | 339, 489, 1638 |
| BsiHKCI | CYCGRG | 1 cut(s) | 515 |
| BsiSI | CCGG | 9 cut(s) | 89, 262, 618, 627, 681, 887, 1170, 1192, 1281 |
| BsiWI | CGTACG | 1 cut(s) | 216 |
| BslFI | GGGAC | 3 cut(s) | 77, 250, 314 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 27, 44, 88, 569, 864, 1065, 1169 |
| BsmAI | GTCTC | 4 cut(s) | 742, 803, 897, 1259 |
| BsmBI | CGTCTC | 1 cut(s) | 742 |
| BsmFI | GGGAC | 3 cut(s) | 77, 250, 314 |
| Bso31I | GGTCTC | 2 cut(s) | 803, 1259 |
| BsoBI | CYCGRG | 1 cut(s) | 515 |
| Bsp119I | TTCGAA | 1 cut(s) | 840 |
| Bsp1286I | GDGCHC | 4 cut(s) | 339, 489, 687, 1638 |
| Bsp143I | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1129 |
| Bsp19I | CCATGG | 1 cut(s) | 1479 |
| BspCNI | CTCAG | 9 cut(s) | 843, 946, 960, 994, 1006, 1255, 1289, 1384, 1510 |
| BspDI | ATCGAT | 1 cut(s) | 33 |
| BspFNI | CGCG | 3 cut(s) | 167, 702, 980 |
| BspHI | TCATGA | 1 cut(s) | 1227 |
| BspLI | GGNNCC | 7 cut(s) | 93, 266, 394, 622, 686, 1383, 1401 |
| BspMAI | CTGCAG | 1 cut(s) | 1528 |
| BspPI | GGATC | 3 cut(s) | 29, 38, 553 |
| BspQI | GCTCTTC | 1 cut(s) | 720 |
| BspT104I | TTCGAA | 1 cut(s) | 840 |
| BspT107I | GGYRCC | 2 cut(s) | 620, 1381 |
| BspTI | CTTAAG | 1 cut(s) | 1624 |
| BspTNI | GGTCTC | 2 cut(s) | 803, 1259 |
| BsrBI | CCGCTC | 4 cut(s) | 45, 278, 464, 829 |
| BsrDI | GCAATG | 1 cut(s) | 1425 |
| BsrFI | RCCGGY | 2 cut(s) | 626, 886 |
| BsrI | ACTGG | 1 cut(s) | 1069 |
| BssAI | RCCGGY | 2 cut(s) | 626, 886 |
| BssECI | CCNNGG | 5 cut(s) | 477, 813, 858, 1269, 1479 |
| BssHII | GCGCGC | 1 cut(s) | 978 |
| BssMI | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| BssNI | GRCGYC | 2 cut(s) | 192, 363 |
| BssT1I | CCWWGG | 4 cut(s) | 477, 813, 1269, 1479 |
| Bst2UI | CCWGG | 3 cut(s) | 416, 506, 1188 |
| Bst4CI | ACNGT | 5 cut(s) | 53, 181, 1052, 1110, 1225 |
| Bst6I | CTCTTC | 3 cut(s) | 614, 720, 1092 |
| BstACI | GRCGYC | 2 cut(s) | 192, 363 |
| BstAFI | CTTAAG | 1 cut(s) | 1624 |
| BstBAI | YACGTR | 3 cut(s) | 295, 766, 1240 |
| BstBI | TTCGAA | 1 cut(s) | 840 |
| BstC8I | GCNNGC | 4 cut(s) | 378, 930, 953, 980 |
| BstDSI | CCRYGG | 2 cut(s) | 858, 1479 |
| BstF5I | GGATG | 6 cut(s) | 487, 548, 614, 974, 1089, 1417 |
| BstFNI | CGCG | 3 cut(s) | 167, 702, 980 |
| BstHHI | GCGC | 4 cut(s) | 169, 702, 980, 982 |
| BstKTI | GATC | 9 cut(s) | 33, 37, 408, 548, 906, 946, 1303, 1362, 1623 |
| BstMAI | GTCTC | 4 cut(s) | 742, 803, 897, 1259 |
| BstMBI | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| BstMCI | CGRYCG | 2 cut(s) | 165, 631 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 455, 627, 691, 1197, 1436 |
| BstNI | CCWGG | 3 cut(s) | 416, 506, 1188 |
| BstNSI | RCATGY | 1 cut(s) | 886 |
| BstSCI | CCNGG | 5 cut(s) | 414, 504, 680, 1186, 1280 |
| BstSFI | CTRYAG | 1 cut(s) | 1524 |
| BstSNI | TACGTA | 1 cut(s) | 1240 |
| BstUI | CGCG | 3 cut(s) | 167, 702, 980 |
| BstV1I | GCAGC | 5 cut(s) | 681, 738, 1082, 1197, 1510 |
| BstV2I | GAAGAC | 1 cut(s) | 1298 |
| BstX2I | RGATCY | 1 cut(s) | 1620 |
| BstYI | RGATCY | 1 cut(s) | 1620 |
| BstZI | CGGCCG | 1 cut(s) | 628 |
| Bsu15I | ATCGAT | 1 cut(s) | 33 |
| BsuI | GTATCC | 2 cut(s) | 1040, 1461 |
| BsuTUI | ATCGAT | 1 cut(s) | 33 |
| BtgI | CCRYGG | 2 cut(s) | 858, 1479 |
| BtgZI | GCGATG | 3 cut(s) | 424, 815, 860 |
| BtrI | CACGTC | 2 cut(s) | 328, 1577 |
| BtsCI | GGATG | 6 cut(s) | 487, 548, 614, 974, 1089, 1417 |
| BtsIMutI | CAGTG | 2 cut(s) | 1011, 1515 |
| Cac8I | GCNNGC | 4 cut(s) | 378, 930, 953, 980 |
| CciI | TCATGA | 1 cut(s) | 1227 |
| CfoI | GCGC | 4 cut(s) | 169, 702, 980, 982 |
| Cfr10I | RCCGGY | 2 cut(s) | 626, 886 |
| Cfr13I | GGNCC | 7 cut(s) | 91, 264, 393, 418, 855, 1123, 1217 |
| ClaI | ATCGAT | 1 cut(s) | 33 |
| CseI | GACGC | 2 cut(s) | 200, 352 |
| CsiI | ACCWGGT | 1 cut(s) | 414 |
| Csp6I | GTAC | 4 cut(s) | 217, 868, 1366, 1382 |
| CviAII | CATG | 7 cut(s) | 209, 529, 781, 883, 1228, 1480, 1646 |
| CviQI | GTAC | 4 cut(s) | 217, 868, 1366, 1382 |
| DpnI | GATC | 9 cut(s) | 32, 36, 407, 547, 905, 945, 1302, 1361, 1622 |
| DpnII | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| DriI | GACNNNNNGTC | 1 cut(s) | 89 |
| EaeI | YGGCCR | 3 cut(s) | 232, 628, 1189 |
| EagI | CGGCCG | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 3 cut(s) | 614, 720, 1092 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 89 |
| EarI | CTCTTC | 3 cut(s) | 614, 720, 1092 |
| EciI | GGCGGA | 3 cut(s) | 20, 90, 885 |
| Ecl136II | GAGCTC | 2 cut(s) | 487, 1636 |
| EclXI | CGGCCG | 1 cut(s) | 628 |
| Eco105I | TACGTA | 1 cut(s) | 1240 |
| Eco130I | CCWWGG | 4 cut(s) | 477, 813, 1269, 1479 |
| Eco147I | AGGCCT | 2 cut(s) | 1178, 1373 |
| Eco24I | GRGCYC | 3 cut(s) | 489, 687, 1638 |
| Eco31I | GGTCTC | 2 cut(s) | 803, 1259 |
| Eco47I | GGWCC | 5 cut(s) | 91, 264, 393, 418, 1217 |
| Eco52I | CGGCCG | 1 cut(s) | 628 |
| Eco53kI | GAGCTC | 2 cut(s) | 487, 1636 |
| Eco57I | CTGAAG | 1 cut(s) | 1116 |
| Eco72I | CACGTG | 2 cut(s) | 295, 766 |
| Eco88I | CYCGRG | 1 cut(s) | 515 |
| EcoICRI | GAGCTC | 2 cut(s) | 487, 1636 |
| EcoRII | CCWGG | 3 cut(s) | 414, 504, 1186 |
| EcoT14I | CCWWGG | 4 cut(s) | 477, 813, 1269, 1479 |
| EcoT38I | GRGCYC | 3 cut(s) | 489, 687, 1638 |
| ErhI | CCWWGG | 4 cut(s) | 477, 813, 1269, 1479 |
| Esp3I | CGTCTC | 1 cut(s) | 742 |
| FaeI | CATG | 7 cut(s) | 212, 532, 784, 886, 1231, 1483, 1649 |
| FaqI | GGGAC | 3 cut(s) | 77, 250, 314 |
| FatI | CATG | 7 cut(s) | 208, 528, 780, 882, 1227, 1479, 1645 |
| FauI | CCCGC | 3 cut(s) | 283, 385, 442 |
| FbaI | TGATCA | 1 cut(s) | 1359 |
| FokI | GGATG | 6 cut(s) | 494, 535, 601, 981, 1096, 1404 |
| FriOI | GRGCYC | 3 cut(s) | 489, 687, 1638 |
| FspBI | CTAG | 2 cut(s) | 677, 1656 |
| GlaI | GCGC | 4 cut(s) | 168, 701, 979, 981 |
| GsaI | CCCAGC | 2 cut(s) | 24, 1391 |
| GsuI | CTGGAG | 1 cut(s) | 1593 |
| HapII | CCGG | 9 cut(s) | 89, 262, 618, 627, 681, 887, 1170, 1192, 1281 |
| HgaI | GACGC | 2 cut(s) | 200, 352 |
| HhaI | GCGC | 4 cut(s) | 169, 702, 980, 982 |
| Hin1I | GRCGYC | 2 cut(s) | 192, 363 |
| Hin1II | CATG | 7 cut(s) | 212, 532, 784, 886, 1231, 1483, 1649 |
| Hin6I | GCGC | 4 cut(s) | 167, 700, 978, 980 |
| HinP1I | GCGC | 4 cut(s) | 167, 700, 978, 980 |
| HincII | GTYRAC | 2 cut(s) | 1159, 1342 |
| HindII | GTYRAC | 2 cut(s) | 1159, 1342 |
| HpaII | CCGG | 9 cut(s) | 89, 262, 618, 627, 681, 887, 1170, 1192, 1281 |
| HphI | GGTGA | 7 cut(s) | 118, 418, 504, 647, 818, 928, 1310 |
| Hpy166II | GTNNAC | 5 cut(s) | 56, 241, 747, 1159, 1342 |
| Hpy188III | TCNNGA | 4 cut(s) | 649, 1228, 1421, 1454 |
| Hpy8I | GTNNAC | 5 cut(s) | 56, 241, 747, 1159, 1342 |
| Hpy99I | CGWCG | 3 cut(s) | 368, 371, 1578 |
| HpyAV | CCTTC | 3 cut(s) | 79, 985, 1225 |
| HpyCH4III | ACNGT | 5 cut(s) | 53, 181, 1052, 1110, 1225 |
| HpyCH4IV | ACGT | 5 cut(s) | 294, 327, 765, 1239, 1576 |
| HpyCH4V | TGCA | 4 cut(s) | 1042, 1526, 1544, 1556 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 455, 627, 691, 1197, 1436 |
| HpySE526I | ACGT | 5 cut(s) | 294, 327, 765, 1239, 1576 |
| Hsp92I | GRCGYC | 2 cut(s) | 192, 363 |
| Hsp92II | CATG | 7 cut(s) | 212, 532, 784, 886, 1231, 1483, 1649 |
| HspAI | GCGC | 4 cut(s) | 167, 700, 978, 980 |
| KpnI | GGTACC | 1 cut(s) | 1385 |
| Ksp22I | TGATCA | 1 cut(s) | 1359 |
| Kzo9I | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| LguI | GCTCTTC | 1 cut(s) | 720 |
| LmnI | GCTCC | 5 cut(s) | 477, 492, 690, 826, 1633 |
| Lsp1109I | GCAGC | 5 cut(s) | 681, 738, 1082, 1197, 1510 |
| LweI | GCATC | 2 cut(s) | 837, 1423 |
| MabI | ACCWGGT | 1 cut(s) | 414 |
| MaeI | CTAG | 2 cut(s) | 677, 1656 |
| MaeII | ACGT | 5 cut(s) | 294, 327, 765, 1239, 1576 |
| MaeIII | GTNAC | 1 cut(s) | 1235 |
| MalI | GATC | 9 cut(s) | 32, 36, 407, 547, 905, 945, 1302, 1361, 1622 |
| MbiI | CCGCTC | 4 cut(s) | 45, 278, 464, 829 |
| MboI | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| MboII | GAAGA | 7 cut(s) | 601, 737, 769, 1109, 1303, 1472, 1579 |
| MflI | RGATCY | 1 cut(s) | 1620 |
| MhlI | GDGCHC | 4 cut(s) | 339, 489, 687, 1638 |
| MluCI | AATT | 2 cut(s) | 1355, 1670 |
| MlyI | GAGTC | 8 cut(s) | 392, 417, 503, 587, 646, 1085, 1109, 1268 |
| MmeI | TCCRAC | 9 cut(s) | 8, 106, 225, 420, 445, 523, 576, 1244, 1377 |
| MseI | TTAA | 2 cut(s) | 1349, 1625 |
| MslI | CAYNNNNRTG | 1 cut(s) | 887 |
| MspA1I | CMGCKG | 3 cut(s) | 1073, 1391, 1439 |
| MspCI | CTTAAG | 1 cut(s) | 1624 |
| MspI | CCGG | 9 cut(s) | 89, 262, 618, 627, 681, 887, 1170, 1192, 1281 |
| MspR9I | CCNGG | 5 cut(s) | 416, 506, 682, 1188, 1282 |
| MvaI | CCWGG | 3 cut(s) | 416, 506, 1188 |
| MvnI | CGCG | 3 cut(s) | 167, 702, 980 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 455, 627, 691, 1197, 1436 |
| NciI | CCSGG | 2 cut(s) | 682, 1282 |
| NcoI | CCATGG | 1 cut(s) | 1479 |
| NdeII | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| NlaIII | CATG | 7 cut(s) | 212, 532, 784, 886, 1231, 1483, 1649 |
| NlaIV | GGNNCC | 7 cut(s) | 93, 266, 394, 622, 686, 1383, 1401 |
| NmeAIII | GCCGAG | 2 cut(s) | 575, 656 |
| NspI | RCATGY | 1 cut(s) | 886 |
| NspV | TTCGAA | 1 cut(s) | 840 |
| PagI | TCATGA | 1 cut(s) | 1227 |
| PalAI | GGCGCGCC | 1 cut(s) | 978 |
| PauI | GCGCGC | 1 cut(s) | 978 |
| PceI | AGGCCT | 2 cut(s) | 1178, 1373 |
| PciSI | GCTCTTC | 1 cut(s) | 720 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 198, 360, 549, 1056 |
| PfeI | GAWTC | 6 cut(s) | 573, 604, 1008, 1444, 1474, 1570 |
| Pfl23II | CGTACG | 1 cut(s) | 216 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 27 |
| PfoI | TCCNGGA | 1 cut(s) | 504 |
| PleI | GAGTC | 8 cut(s) | 392, 417, 503, 587, 646, 1085, 1108, 1268 |
| PmaCI | CACGTG | 2 cut(s) | 295, 766 |
| PmlI | CACGTG | 2 cut(s) | 295, 766 |
| PpsI | GAGTC | 8 cut(s) | 392, 417, 503, 587, 646, 1085, 1108, 1268 |
| Ppu21I | YACGTR | 3 cut(s) | 295, 766, 1240 |
| Psp124BI | GAGCTC | 2 cut(s) | 489, 1638 |
| Psp6I | CCWGG | 3 cut(s) | 414, 504, 1186 |
| PspCI | CACGTG | 2 cut(s) | 295, 766 |
| PspFI | CCCAGC | 2 cut(s) | 20, 1387 |
| PspGI | CCWGG | 3 cut(s) | 414, 504, 1186 |
| PspLI | CGTACG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 7 cut(s) | 93, 266, 394, 622, 686, 1383, 1401 |
| PspPI | GGNCC | 7 cut(s) | 91, 264, 393, 418, 855, 1123, 1217 |
| PstI | CTGCAG | 1 cut(s) | 1528 |
| PsuI | RGATCY | 1 cut(s) | 1620 |
| PteI | GCGCGC | 1 cut(s) | 978 |
| PvuII | CAGCTG | 1 cut(s) | 1391 |
| RsaI | GTAC | 4 cut(s) | 218, 869, 1367, 1383 |
| RsaNI | GTAC | 4 cut(s) | 217, 868, 1366, 1382 |
| RseI | CAYNNNNRTG | 1 cut(s) | 887 |
| SacI | GAGCTC | 2 cut(s) | 489, 1638 |
| SapI | GCTCTTC | 1 cut(s) | 720 |
| SaqAI | TTAA | 2 cut(s) | 1349, 1625 |
| Sau3AI | GATC | 9 cut(s) | 30, 34, 405, 545, 903, 943, 1300, 1359, 1620 |
| Sau96I | GGNCC | 7 cut(s) | 91, 264, 393, 418, 855, 1123, 1217 |
| SchI | GAGTC | 8 cut(s) | 392, 417, 503, 587, 646, 1085, 1109, 1268 |
| ScrFI | CCNGG | 5 cut(s) | 416, 506, 682, 1188, 1282 |
| SduI | GDGCHC | 4 cut(s) | 339, 489, 687, 1638 |
| SexAI | ACCWGGT | 1 cut(s) | 414 |
| SfaNI | GCATC | 2 cut(s) | 837, 1423 |
| SfcI | CTRYAG | 1 cut(s) | 1524 |
| SfuI | TTCGAA | 1 cut(s) | 840 |
| SgsI | GGCGCGCC | 1 cut(s) | 978 |
| SinI | GGWCC | 5 cut(s) | 91, 264, 393, 418, 1217 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 887 |
| SmlI | CTYRAG | 1 cut(s) | 1624 |
| SmoI | CTYRAG | 1 cut(s) | 1624 |
| SnaBI | TACGTA | 1 cut(s) | 1240 |
| Sse9I | AATT | 2 cut(s) | 1355, 1670 |
| SseBI | AGGCCT | 2 cut(s) | 1178, 1373 |
| SspMI | CTAG | 2 cut(s) | 677, 1656 |
| SstI | GAGCTC | 2 cut(s) | 489, 1638 |
| StuI | AGGCCT | 2 cut(s) | 1178, 1373 |
| StyD4I | CCNGG | 5 cut(s) | 414, 504, 680, 1186, 1280 |
| StyI | CCWWGG | 4 cut(s) | 477, 813, 1269, 1479 |
| TaaI | ACNGT | 5 cut(s) | 53, 181, 1052, 1110, 1225 |
| TaiI | ACGT | 5 cut(s) | 297, 330, 768, 1242, 1579 |
| TaqI | TCGA | 5 cut(s) | 33, 576, 834, 840, 1573 |
| TaqII | GACCGA | 1 cut(s) | 1073 |
| TasI | AATT | 2 cut(s) | 1355, 1670 |
| TatI | WGTACW | 1 cut(s) | 1365 |
| TauI | GCSGC | 8 cut(s) | 48, 197, 602, 700, 978, 1076, 1128, 1439 |
| TfiI | GAWTC | 6 cut(s) | 573, 604, 1008, 1444, 1474, 1570 |
| Tru1I | TTAA | 2 cut(s) | 1349, 1625 |
| Tru9I | TTAA | 2 cut(s) | 1349, 1625 |
| TscAI | CASTG | 2 cut(s) | 1018, 1522 |
| TseI | GCWGC | 5 cut(s) | 694, 751, 1070, 1210, 1523 |
| TspDTI | ATGAA | 7 cut(s) | 217, 292, 655, 769, 1244, 1473, 1653 |
| TspGWI | ACGGA | 1 cut(s) | 1437 |
| TspRI | CASTG | 2 cut(s) | 1018, 1522 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 27 |
| Vha464I | CTTAAG | 1 cut(s) | 1624 |
| VpaK11BI | GGWCC | 5 cut(s) | 91, 264, 393, 418, 1217 |
| XceI | RCATGY | 1 cut(s) | 886 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 292, 502 |
| XspI | CTAG | 2 cut(s) | 677, 1656 |