Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001926

Physical Location & Seq

Genomic Coordinates Forward (+)

25993236 .. 25998727

Gene Structure 5492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G239800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTTAATCAGTAGTGAAATGAGTGCGCAAAGTACATTGGAGAACACTCTCAAGGAAATACTACGTGTTGTCAAACCCTTGCGTGAGGATTGGACAACACGGTTGCAAATCATTGATGAGTTACGAGGAGCTGTTGAATCTGTGGAAAGTTTAAGAGGTGCAACTGTGGAACCATTTGGGTCATTTGTGTCTGATCTCTTTACAAGGTGGGGAGACTTGGATGTTTCAATTGAGTTTTCCAATGGTTCATTTGTTTCACCTTATGGGAAAAAGCAGAAACAACGTTTACTAGGAGATGTTATGAGAGCTATGAGACAGAAAGGTGGATGGAGGAGGTACCAATTAATCCCCAATGCAAGAGTTCCCATTTTAAAGGTTGAAAGTAATCTCCAAAATGTATCTTGCGATATTTCAATCGATAATCTGAAATGCCAAATGAAGTCTAGACTCTTGTTCTGGATCAGTGAGATAGATACACGCTTCCGCGATATGGTTTTACTGATTAAGGAATGGGCAAAAGCACACAACATAAATAATCCAAAATTTGGGACTTTCAATTCGTACTCTCTCACTTTGCTTGTGGTCTTCCATTTTCAGACATGTGCACCTGCAATTTTTCCACCCCTTAAAGATATATATCCAGGAAATCTCATTGATGATCTTAAAGGCTTGAGGGCTGATACAGAGAGACGTATTGAAGAGACATGTGCTGCTAATATAAGAAGGTTTCAATCATACAATTTGAGGGCAGAAAACAGAAGTTCTTTGTCTGAGCTTTTCATTTCATTCCTTGGGAAGTTTTCTGACATCAGTTTGAAGGCTTCGGAATTAGGAATTTGCACTTATACTGGACAGTGGCAAGCCATAAAAAGCAATATGAGATGGTTGCCCCAAACTTATGCCCTATTTATTGAAGATCCTTTTGAGCAGCCTGAAAATTCTGCGAGGGCTGTTAGCAAGAGGGAATTGACAAGGATATCAGAAACATTTGAGATGAGCCACCACATGCTCATCTCACCCAATCACAGTTCGCTTCTTGCCACACTAGTCCGACCTCAAATGTTAAGCCTCATGGTAAGAACACCGGACTGGCGCCGCCAACCAACTCATCCACAACGTTTCAGGGCTGAGGGTTCACATTCACCAACCCCAAGCAACAACAATGGCCCCCGACAACCAACTCGTCCTCAGGTGCACAGGGTGGTGCGCTCACCCTCACAAGTGCAACCTCAATATCAGACGGTGAAGCCAAAAGGCCCCTCAGAAGTGCAACCTCAATATCAGACGGTGAAGCCAAAAGGCCCCTCACAAGTGCAACCTCAATTTCAGACTATGAACCCAAAAAGCCATCCCAACAGGGCAACCTTTAAAAAACCTCCTCTGCAGACATACGAAGATCAACGGCAGCAAATATGGAGACCAAGATCTGATAGACCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

481

Amino Acids

55.34

Weight (kDa)

9.84

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39740 AT2G39740 AT2G39740
fragaria_vesca	FvH4_7g23070 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071
malus_domestica	MD01G1139300.v1.1
prunus_persica	Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1
pyrus_communis	pycom01g15990
rosa_chinensis	RchiOBHm_Chr1g0368311 RchiOBHm_Chr1g0368321
rosa_laevigata	RLG00000027220 RLG00000027221
rosa_multiflora	Rmu_sc0002709.1_g000049 Rmu_sc0009391.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288650 Rroxscaffold_4G00288660
rosa_rugosa	Rorug01G0340200 Rorug01G0340300 Rorug01G0340400 Rorug01G0340500 Rorug01G0340600 Rorug01G0340700 Rorug01G0340800 Rorug01G0340900 Rorug01G0341000 Rorug01G0341100
rosa_samantha	Rh1AG347600 Rh1AG347700 Rh1BG310600 Rh1BG310700 Rh1CG326000 Rh1CG326100 Rh1DG342400 Rh1DG342500
rosa_wichuraiana	Rw1G030940 Rw1G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
Acc16I	TGCGCA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	2 cut(s)	336, 1092
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccII	CGCG	1 cut(s)	486
AciI	CCGC	2 cut(s)	484, 1096
AclI	AACGTT	2 cut(s)	283, 1117
AclWI	GGATC	2 cut(s)	467, 911
AcsI	RAATTY	3 cut(s)	542, 834, 937
AcyI	GRCGYC	1 cut(s)	1093
AdeI	CACNNNGTG	1 cut(s)	1201
AfaI	GTAC	3 cut(s)	34, 338, 563
AfiI	CCNNNNNNNGG	2 cut(s)	490, 545
AflIII	ACRYGT	3 cut(s)	64, 599, 704
AgsI	TTSAA	9 cut(s)	137, 228, 380, 414, 556, 698, 731, 817, 914
AhlI	ACTAGT	1 cut(s)	1045
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	3 cut(s)	131, 308, 775
AluI	AGCT	3 cut(s)	131, 308, 775
Alw21I	GWGCWC	2 cut(s)	607, 1197
Alw26I	GTCTC	5 cut(s)	207, 307, 682, 695, 1411
Alw44I	GTGCAC	2 cut(s)	603, 1193
AlwI	GGATC	2 cut(s)	467, 911
AoxI	GGCC	3 cut(s)	1165, 1255, 1300
ApaLI	GTGCAC	2 cut(s)	603, 1193
ApeKI	GCWGC	3 cut(s)	710, 928, 1405
ApoI	RAATTY	3 cut(s)	542, 834, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AseI	ATTAAT	1 cut(s)	344
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	28, 1095, 1209
AspS9I	GGNCC	3 cut(s)	1166, 1256, 1301
AsuHPI	GGTGA	6 cut(s)	249, 1008, 1134, 1203, 1255, 1300
AxyI	CCTNAGG	1 cut(s)	1188
BaeGI	GKGCMC	2 cut(s)	607, 1197
BanI	GGYRCC	2 cut(s)	336, 1092
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	607, 1197
BbvCI	CCTCAGC	1 cut(s)	1128
BbvI	GCAGC	3 cut(s)	697, 940, 1417
BccI	CCATC	3 cut(s)	321, 876, 1356
BceAI	ACGGC	1 cut(s)	1418
BciT130I	CCWGG	1 cut(s)	642
BcoDI	GTCTC	5 cut(s)	207, 307, 682, 695, 1411
BcuI	ACTAGT	1 cut(s)	1045
BfaI	CTAG	3 cut(s)	290, 444, 1046
BfmI	CTRYAG	1 cut(s)	1382
BfoI	RGCGCY	1 cut(s)	1096
BfuAI	ACCTGC	1 cut(s)	616
BglII	AGATCT	1 cut(s)	1424
BisI	GCNGC	4 cut(s)	711, 929, 1096, 1406
BlsI	GCNGC	4 cut(s)	712, 930, 1097, 1407
Bme1390I	CCNGG	1 cut(s)	642
BmgT120I	GGNCC	3 cut(s)	1166, 1256, 1301
BmiI	GGNNCC	6 cut(s)	171, 338, 1094, 1168, 1258, 1303
BmrFI	CCNGG	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	35, 691
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	1093
BsaI	GGTCTC	1 cut(s)	1411
BsaJI	CCNNGG	1 cut(s)	790
BsaWI	WCCGGW	1 cut(s)	1084
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 545
Bse1I	ACTGG	3 cut(s)	853, 1094, 1436
Bse21I	CCTNAGG	1 cut(s)	1188
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	790
BseGI	GGATG	4 cut(s)	226, 332, 1108, 1348
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	490, 545
BseMII	CTCAG	4 cut(s)	762, 1119, 1202, 1275
BseNI	ACTGG	3 cut(s)	853, 1094, 1436
BseRI	GAGGAG	3 cut(s)	141, 346, 1368
BseSI	GKGCMC	2 cut(s)	607, 1197
BseXI	GCAGC	3 cut(s)	697, 940, 1417
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	1167, 1257, 1302
BshNI	GGYRCC	2 cut(s)	336, 1092
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	607, 1197
BsiSI	CCGG	1 cut(s)	1085
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	490, 545
BsmAI	GTCTC	5 cut(s)	207, 307, 682, 695, 1411
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	3 cut(s)	1167, 1257, 1302
Bso31I	GGTCTC	1 cut(s)	1411
Bsp1286I	GDGCHC	2 cut(s)	607, 1197
Bsp143I	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
BspACI	CCGC	2 cut(s)	484, 1096
BspANI	GGCC	3 cut(s)	1167, 1257, 1302
BspCNI	CTCAG	4 cut(s)	763, 1120, 1201, 1274
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	6 cut(s)	171, 338, 1094, 1168, 1258, 1303
BspMAI	CTGCAG	1 cut(s)	1386
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	467, 911
BspT107I	GGYRCC	2 cut(s)	336, 1092
BspTNI	GGTCTC	1 cut(s)	1411
BsrI	ACTGG	3 cut(s)	853, 1094, 1436
BssECI	CCNNGG	1 cut(s)	790
BssMI	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
BssNI	GRCGYC	1 cut(s)	1093
BssT1I	CCWWGG	1 cut(s)	790
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	6 cut(s)	102, 166, 855, 1028, 1243, 1288
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	1093
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	4 cut(s)	771, 1128, 1188, 1261
BstF5I	GGATG	4 cut(s)	226, 332, 1108, 1348
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	1096
BstHHI	GCGC	3 cut(s)	28, 1095, 1209
BstKTI	GATC	6 cut(s)	196, 462, 661, 919, 1399, 1427
BstMAI	GTCTC	5 cut(s)	207, 307, 682, 695, 1411
BstMBI	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	3 cut(s)	603, 708, 1009
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	1 cut(s)	1382
BstSLI	GKGCMC	2 cut(s)	607, 1197
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	697, 940, 1417
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	916, 1424
BstYI	RGATCY	2 cut(s)	916, 1424
Bsu15I	ATCGAT	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	1188
BsuRI	GGCC	3 cut(s)	1167, 1257, 1302
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	226, 332, 1108, 1348
BtsIMutI	CAGTG	3 cut(s)	469, 860, 1443
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	861
CfoI	GCGC	3 cut(s)	28, 1095, 1209
Cfr13I	GGNCC	3 cut(s)	1166, 1256, 1301
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	3 cut(s)	33, 337, 562
CviAII	CATG	4 cut(s)	600, 705, 1006, 1072
CviQI	GTAC	3 cut(s)	33, 337, 562
DdeI	CTNAG	4 cut(s)	771, 1128, 1188, 1261
DinI	GGCGCC	1 cut(s)	1094
DpnI	GATC	6 cut(s)	195, 461, 660, 918, 1398, 1426
DpnII	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
DraI	TTTAAA	2 cut(s)	372, 1369
DraIII	CACNNNGTG	1 cut(s)	1201
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	790
Eco31I	GGTCTC	1 cut(s)	1411
Eco32I	GATATC	1 cut(s)	978
Eco81I	CCTNAGG	1 cut(s)	1188
EcoO109I	RGGNCCY	2 cut(s)	1256, 1301
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	790
EgeI	GGCGCC	1 cut(s)	1094
EheI	GGCGCC	1 cut(s)	1094
ErhI	CCWWGG	1 cut(s)	790
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	4 cut(s)	603, 708, 1009, 1075
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	4 cut(s)	599, 704, 1005, 1071
Fnu4HI	GCNGC	4 cut(s)	711, 929, 1096, 1406
FokI	GGATG	4 cut(s)	233, 339, 1095, 1335
Fsp4HI	GCNGC	4 cut(s)	711, 929, 1096, 1406
FspBI	CTAG	3 cut(s)	290, 444, 1046
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	3 cut(s)	27, 1094, 1208
GluI	GCNGC	4 cut(s)	711, 929, 1096, 1406
HaeII	RGCGCY	1 cut(s)	1096
HaeIII	GGCC	3 cut(s)	1167, 1257, 1302
HapII	CCGG	1 cut(s)	1085
HhaI	GCGC	3 cut(s)	28, 1095, 1209
Hin1I	GRCGYC	1 cut(s)	1093
Hin1II	CATG	4 cut(s)	603, 708, 1009, 1075
Hin6I	GCGC	3 cut(s)	26, 1093, 1207
HinP1I	GCGC	3 cut(s)	26, 1093, 1207
HinfI	GANTC	2 cut(s)	137, 447
HpaII	CCGG	1 cut(s)	1085
HphI	GGTGA	6 cut(s)	249, 1008, 1134, 1203, 1255, 1300
Hpy166II	GTNNAC	4 cut(s)	287, 605, 1136, 1195
Hpy188III	TCNNGA	2 cut(s)	444, 457
Hpy8I	GTNNAC	4 cut(s)	287, 605, 1136, 1195
HpyAV	CCTTC	2 cut(s)	717, 811
HpyCH4III	ACNGT	6 cut(s)	102, 166, 855, 1028, 1243, 1288
HpyCH4IV	ACGT	4 cut(s)	64, 283, 691, 1117
HpyF3I	CTNAG	4 cut(s)	771, 1128, 1188, 1261
HpySE526I	ACGT	4 cut(s)	64, 283, 691, 1117
Hsp92I	GRCGYC	1 cut(s)	1093
Hsp92II	CATG	4 cut(s)	603, 708, 1009, 1075
HspAI	GCGC	3 cut(s)	26, 1093, 1207
KasI	GGCGCC	1 cut(s)	1092
KpnI	GGTACC	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	3 cut(s)	697, 940, 1417
MaeI	CTAG	3 cut(s)	290, 444, 1046
MaeII	ACGT	4 cut(s)	64, 283, 691, 1117
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	6 cut(s)	195, 461, 660, 918, 1398, 1426
MboI	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
MboII	GAAGA	4 cut(s)	577, 710, 926, 1406
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	2 cut(s)	916, 1424
MhlI	GDGCHC	2 cut(s)	607, 1197
Mly113I	GGCGCC	1 cut(s)	1093
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	1075
MseI	TTAA	9 cut(s)	5, 152, 344, 371, 504, 627, 663, 1064, 1368
MspI	CCGG	1 cut(s)	1085
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	486
NarI	GGCGCC	1 cut(s)	1093
NdeII	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
NlaIII	CATG	4 cut(s)	603, 708, 1009, 1075
NlaIV	GGNNCC	6 cut(s)	171, 338, 1094, 1168, 1258, 1303
NsbI	TGCGCA	1 cut(s)	27
NspI	RCATGY	3 cut(s)	603, 708, 1009
PaqCI	CACCTGC	1 cut(s)	616
PciI	ACATGT	2 cut(s)	599, 704
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	4 cut(s)	712, 930, 1097, 1407
PleI	GAGTC	1 cut(s)	441
PluTI	GGCGCC	1 cut(s)	1096
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	2 cut(s)	599, 704
PshBI	ATTAAT	1 cut(s)	344
Psp1406I	AACGTT	2 cut(s)	283, 1117
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	6 cut(s)	171, 338, 1094, 1168, 1258, 1303
PspPI	GGNCC	3 cut(s)	1166, 1256, 1301
PstI	CTGCAG	1 cut(s)	1386
PsuI	RGATCY	2 cut(s)	916, 1424
RsaI	GTAC	3 cut(s)	34, 338, 563
RsaNI	GTAC	3 cut(s)	33, 337, 562
SaqAI	TTAA	9 cut(s)	5, 152, 344, 371, 504, 627, 663, 1064, 1368
SatI	GCNGC	4 cut(s)	711, 929, 1096, 1406
Sau3AI	GATC	6 cut(s)	193, 459, 658, 916, 1396, 1424
Sau96I	GGNCC	3 cut(s)	1166, 1256, 1301
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	2 cut(s)	607, 1197
SfcI	CTRYAG	1 cut(s)	1382
SfoI	GGCGCC	1 cut(s)	1094
SmlI	CTYRAG	2 cut(s)	50, 670
SmoI	CTYRAG	2 cut(s)	50, 670
SpeI	ACTAGT	1 cut(s)	1045
SsiI	CCGC	2 cut(s)	484, 1096
SspDI	GGCGCC	1 cut(s)	1092
SspMI	CTAG	3 cut(s)	290, 444, 1046
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	6 cut(s)	102, 166, 855, 1028, 1243, 1288
TaiI	ACGT	4 cut(s)	67, 286, 694, 1120
TaqI	TCGA	1 cut(s)	417
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	1 cut(s)	1098
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	9 cut(s)	5, 152, 344, 371, 504, 627, 663, 1064, 1368
Tru9I	TTAA	9 cut(s)	5, 152, 344, 371, 504, 627, 663, 1064, 1368
TscAI	CASTG	3 cut(s)	469, 860, 1443
TseI	GCWGC	3 cut(s)	710, 928, 1405
TspDTI	ATGAA	5 cut(s)	237, 452, 769, 774, 1349
TspRI	CASTG	3 cut(s)	469, 860, 1443
Van91I	CCANNNNNTGG	1 cut(s)	545
VneI	GTGCAC	2 cut(s)	603, 1193
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	3 cut(s)	542, 834, 937
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	3 cut(s)	603, 708, 1009
XspI	CTAG	3 cut(s)	290, 444, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.