Rorug01G0340800

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001926
Physical Location & Seq
Forward (+)
45907916 .. 45912594
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0340800.1

Sequence Viewer

Length: 327 bp
ATGTATGGCACCGATTACCACTATTTTCTTCTTCTTTCTTACCCAAATTCGTTTTCTGTTGACCCTGGCTTGGTCACCCACATTCCACAATCTCAGACGACATGGAAATCCACTTCGCCCCTCTCCCTTGGTTTCTGGTTTTGTATACCCTCATCATGCAAGCCTTATGTAGTGTTTGGCACTCCATCTATGCTATCTCAAAGTTCCGCATGGTTAGAGATTGATGAAGCTCATGACGCTTTGATCACTTTTGAAGCAGCTCAGTTGTATTCGATCTGCATTTGTCATTTGTATTTGAGCACTGGTTCGACATGGAGTTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

4.9

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 145
AciI CCGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 230, 260
AluI AGCT 2 cut(s) 230, 260
Alw21I GWGCWC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 243
BfaI CTAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 64, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 64, 127
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 107, 275
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 243, 273, 321
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 106, 274
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 64, 127
BssMI GATC 3 cut(s) 243, 273, 321
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 93, 261
BstEII GGTNACC 1 cut(s) 73
BstKTI GATC 3 cut(s) 246, 276, 324
BstMBI GATC 3 cut(s) 243, 273, 321
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BstZ17I GTATAC 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 232
CseI GACGC 1 cut(s) 245
CviAII CATG 5 cut(s) 102, 156, 210, 233, 312
CviJI RGCY 4 cut(s) 69, 163, 230, 260
CviKI_1 RGCY 4 cut(s) 69, 163, 230, 260
DdeI CTNAG 2 cut(s) 93, 261
DpnI GATC 3 cut(s) 245, 275, 323
DpnII GATC 3 cut(s) 243, 273, 321
Eco130I CCWWGG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 5 cut(s) 105, 159, 213, 236, 315
FaiI YATR 9 cut(s) 6, 103, 146, 157, 168, 191, 211, 234, 313
FatI CATG 5 cut(s) 101, 155, 209, 232, 311
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 325
GluI GCNGC 1 cut(s) 258
HgaI GACGC 1 cut(s) 245
Hin1II CATG 5 cut(s) 105, 159, 213, 236, 315
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 61, 146
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 61, 146
HpyCH4V TGCA 2 cut(s) 159, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 93, 261
Hsp92II CATG 5 cut(s) 105, 159, 213, 236, 315
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 3 cut(s) 243, 273, 321
LpnPI CCDG 4 cut(s) 51, 78, 121, 288
Lsp1109I GCAGC 1 cut(s) 269
MaeI CTAG 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 245, 275, 323
MboI GATC 3 cut(s) 243, 273, 321
MboII GAAGA 2 cut(s) 20, 23
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 2 cut(s) 131, 160
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 3 cut(s) 243, 273, 321
NlaIII CATG 5 cut(s) 105, 159, 213, 236, 315
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 73
PagI TCATGA 1 cut(s) 232
PkrI GCNGC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 321
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 243, 273, 321
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 302
SetI ASST 2 cut(s) 232, 262
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 127
TaqI TCGA 2 cut(s) 272, 308
TasI AATT 1 cut(s) 46
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.