Rorug01G0340700

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001926
Physical Location & Seq
Forward (+)
45892791 .. 45894904
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0340700.1

Sequence Viewer

Length: 693 bp
ATGATGCCAGGCCTAAACCCTCTCATCCTCTTCGCAATGTTGTCGTCATTGTCTCTCCCCAATCCTCCGACCTCGCCGCCTACCTTTGACGCCTTCGTGATGCCATTGAAGAGCTCCAGAACCCGAAACACCATTCTTCGCCCGTATCATCCACCGCCATCACCAAATCGAATTTATGGTGATGAAGATCCTAACAAGAGAAACAAACTAGTTCAGGACTTGAATGATTTAACTGGAGAAGGAAACATTGAGAGTATGCTTGCAGTAGATTCAGTAGATTATTTACAGTCCTTTGTTTTTGGATTGCGAGGCAACTCTTATTATATTGCTATCAACTTCAGTCATCCACTGGCTGAGCAACAGATAAAAGCTGTGGACAGAGTTTTGTCAGAACTAGATGTGTCTTCGATACCAAGGTTGATGGTGTGGAACAAGGTTGATAAGGTGAGCGATCCTGACAGCATCAGAACAGAAGCAGAAAAGAGAGATGATGTTGTTTGCATATCTGCTCTGAGTAGCCAGGGCTTGAATGATTTCTGCAGTGCAATCCAGGAAAAATTGAAGGACTCTATGGTATGGGTGGAAGCCTTGATCCCATTTGAAAAAGGAGAGCTTCTTAGTACCATACATAAGGTTGGAATGGTGGAGAGAACAGTGCTACTCAAAACTCCATTTGAGTTGCACAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

230

Amino Acids

25.86

Weight (kDa)

5.43

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 155
AclWI GGATC 3 cut(s) 182, 446, 586
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 622, 689
AgsI TTSAA 5 cut(s) 109, 223, 529, 562, 602
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 3 cut(s) 7, 519, 549
AluBI AGCT 3 cut(s) 114, 371, 613
AluI AGCT 3 cut(s) 114, 371, 613
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 3 cut(s) 182, 446, 586
AoxI GGCC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 153, 191, 457
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 2 cut(s) 166, 415
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 3 cut(s) 9, 521, 551
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 2 cut(s) 209, 395
BfmI CTRYAG 1 cut(s) 538
BisI GCNGC 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 3 cut(s) 9, 521, 551
BmrFI CCNGG 3 cut(s) 9, 521, 551
BmsI GCATC 2 cut(s) 90, 471
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 2 cut(s) 100, 255
Bpu1102I GCTNAGC 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 413, 520
Bse1I ACTGG 2 cut(s) 238, 354
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 3 cut(s) 9, 521, 551
BseDI CCNNGG 2 cut(s) 413, 520
BseGI GGATG 3 cut(s) 24, 148, 343
BseJI GATNNNNATC 1 cut(s) 186
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 345, 503
BseNI ACTGG 2 cut(s) 238, 354
BshFI GGCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 187, 451, 591
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 2 cut(s) 77, 155
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 346, 504
BspMAI CTGCAG 1 cut(s) 542
BspPI GGATC 3 cut(s) 182, 446, 586
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 238, 354
BssECI CCNNGG 2 cut(s) 413, 520
BssMI GATC 3 cut(s) 187, 451, 591
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 3 cut(s) 9, 521, 551
Bst4CI ACNGT 2 cut(s) 288, 655
Bst6I CTCTTC 2 cut(s) 35, 104
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 354, 512, 617
BstF5I GGATG 3 cut(s) 24, 148, 343
BstKTI GATC 3 cut(s) 190, 454, 594
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 187, 451, 591
BstNI CCWGG 3 cut(s) 9, 521, 551
BstSCI CCNGG 3 cut(s) 7, 519, 549
BstSFI CTRYAG 1 cut(s) 538
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 24, 148, 343
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 3 cut(s) 347, 547, 660
Cac8I GCNNGC 1 cut(s) 261
CseI GACGC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 621, 688
CviJI RGCY 8 cut(s) 12, 114, 353, 371, 519, 525, 587, 613
CviKI_1 RGCY 8 cut(s) 12, 114, 353, 371, 519, 525, 587, 613
CviQI GTAC 2 cut(s) 621, 688
DdeI CTNAG 3 cut(s) 354, 512, 617
DpnI GATC 3 cut(s) 189, 453, 593
DpnII GATC 3 cut(s) 187, 451, 591
Eam1104I CTCTTC 2 cut(s) 35, 104
EarI CTCTTC 2 cut(s) 35, 104
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 413
Eco147I AGGCCT 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 7, 519, 549
EcoT14I CCWWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 413
FaiI YATR 8 cut(s) 177, 257, 324, 503, 572, 577, 626, 630
FalI AAGNNNNNCTT 2 cut(s) 597, 629
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 3 cut(s) 11, 135, 330
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 209, 395
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 100, 255
HaeIII GGCC 1 cut(s) 12
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
HinfI GANTC 2 cut(s) 269, 566
HphI GGTGA 3 cut(s) 153, 191, 457
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 4 cut(s) 69, 391, 467, 513
Hpy188III TCNNGA 4 cut(s) 97, 117, 215, 455
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 103, 233, 556
HpyCH4III ACNGT 2 cut(s) 288, 655
HpyCH4V TGCA 5 cut(s) 263, 501, 540, 545, 682
HpyF3I CTNAG 3 cut(s) 354, 512, 617
Hsp92I GRCGYC 1 cut(s) 90
Kzo9I GATC 3 cut(s) 187, 451, 591
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 119
LweI GCATC 2 cut(s) 90, 471
MaeI CTAG 2 cut(s) 209, 395
MalI GATC 3 cut(s) 189, 453, 593
MboI GATC 3 cut(s) 187, 451, 591
MboII GAAGA 5 cut(s) 22, 121, 128, 197, 396
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 2 cut(s) 171, 557
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 92, 616
MnlI CCTC 5 cut(s) 30, 38, 75, 82, 302
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 9, 521, 551
MvaI CCWGG 3 cut(s) 9, 521, 551
NdeII GATC 3 cut(s) 187, 451, 591
PceI AGGCCT 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 7, 519, 549
PspGI CCWGG 3 cut(s) 7, 519, 549
PstI CTGCAG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 622, 689
RsaNI GTAC 2 cut(s) 621, 688
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 187, 451, 591
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 3 cut(s) 9, 521, 551
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 2 cut(s) 90, 471
SfcI CTRYAG 1 cut(s) 538
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 2 cut(s) 171, 557
SseBI AGGCCT 1 cut(s) 12
SsiI CCGC 2 cut(s) 77, 155
SspMI CTAG 2 cut(s) 209, 395
SstI GAGCTC 1 cut(s) 116
StuI AGGCCT 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 7, 519, 549
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 2 cut(s) 288, 655
TaqI TCGA 2 cut(s) 169, 407
TasI AATT 2 cut(s) 171, 557
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 3 cut(s) 354, 547, 660
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 3 cut(s) 354, 547, 660
XapI RAATTY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 2 cut(s) 209, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.