Rmu_sc0002709.1_g000049

Poly(A) RNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
Physical Location & Seq
Reverse (-)
177908 .. 181560
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002709.1_g000049.1.cds

Sequence Viewer

Length: 1605 bp
atggagaatactctcagggagataatacgtgtgcttgaacccttgcccacggatcgagaaacacgatgccaaattcttcgggagttacaaggagctgttgagtctgtagagagcttaagaggtgcaactgtggagccatttggatcatttgtctcagaactctttactcgctggggagacttggatgtttcaattgagttctcaaaaggcgcgtatatttcttcttatggaagaaagcacacacaagatgtgctaaaagatttaatgaaggctatgagaatgagaggtggatggaacaggtatcagttcatacctaatgcaagagttcccattctgatggtcaaaagtaatcttggaaacatctcctgtgatatttcagtcaataacctgaaagcccaaatgaaatcaaaactctttttatggatgaatgatatagatccacgctttcgtgatatggttttactggtgaaggaatgggcaaaagcacacaatatcaataattcaaaatctgggactttcaattcatactctctgagtttgcttgtgatcttccattttcagacatgtacacctgcaattctgcctcctcttcaagacatatatacagatactctcacggatgatcttaaaggcttgagggatgatgcagaaagacgtattgaaaaaagttgtgttgagaacatgagaagatttaaactaaacaaattgagagctcggaataaaagttctttgtctgagcttttcatttcattccttgggaagttctctgaccttggttcgaaggctgcggagttgggaatttgcacatattctggaaaatgggaaagaatagaaagcaatatgggatggttgcccaaaacctattgtatattggttgaagatccttttgatcggccagaaaattctgcaagaggtgtcggccaaaaagcattgaaaaggatctctggagtttttgagatgagtcgtgacaggctaatcgcagttagttacaatgcctccttagccattgagagttcccttcttgccacactagtccgaccacatacgctacgtcttattagcaacccaggttacaatattaagcaccaccaaacaactcatccacaatatttcagggctgagagctcacattcacgaaccccaagacatcattataacggtcccccgaaaccaaatggtccttttgtacgagagttggtgcccccaagggaatataacggccccccaaaaccagatggtaaggtacgagagttggtgccccaaagggattataatggccctccgaaaccaagtggttcttatggacgagagttggcagactcgtccccacaaggacatggacatcaacaactacgaaagatggtgcactcatcctcacaagtacagccacaaatactgaagctggtgcactcaccgtcacaagtacagccacaaatacagaagctggtgcactcaccgtcacaagtacaaccgcatatacgaaagtctgtgccctcaacctcacgagtacaatcaccacttcagaaagtgaagccagagatggcaccaatgctacaggcgtatcagaaatggacaccaaagaaaccaggaatgcagaccatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

60.73

Weight (kDa)

9.79

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1155, 1272
AarI CACCTGC 1 cut(s) 580
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 3 cut(s) 1198, 1255, 1543
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 788, 1472
AclWI GGATC 5 cut(s) 60, 151, 431, 875, 947
AcoI YGGCCR 2 cut(s) 893, 919
AcsI RAATTY 3 cut(s) 72, 798, 901
AcuI CTGAAG 2 cut(s) 1418, 1505
AfaI GTAC 7 cut(s) 568, 1188, 1245, 1383, 1425, 1467, 1509
AflII CTTAAG 1 cut(s) 115
AflIII ACRYGT 2 cut(s) 28, 563
AgsI TTSAA 8 cut(s) 38, 192, 504, 520, 593, 662, 878, 934
AhlI ACTAGT 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 1066, 1585
AloI GAACNNNNNNTCC 2 cut(s) 709, 741
AluBI AGCT 7 cut(s) 95, 114, 713, 739, 1125, 1402, 1444
AluI AGCT 7 cut(s) 95, 114, 713, 739, 1125, 1402, 1444
Alw21I GWGCWC 5 cut(s) 715, 1127, 1368, 1410, 1452
Alw26I GTCTC 2 cut(s) 157, 171
Alw44I GTGCAC 3 cut(s) 1364, 1406, 1448
AlwI GGATC 5 cut(s) 60, 151, 431, 875, 947
AlwNI CAGNNNCTG 1 cut(s) 1444
AoxI GGCC 4 cut(s) 893, 919, 1219, 1276
ApaLI GTGCAC 3 cut(s) 1364, 1406, 1448
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 3 cut(s) 72, 798, 901
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
AsuHPI GGTGA 4 cut(s) 478, 1404, 1446, 1506
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 2 cut(s) 1160, 1178
BaeGI GKGCMC 6 cut(s) 1203, 1260, 1368, 1410, 1452, 1494
BaeI ACNNNNGTAYC 4 cut(s) 1235, 1268, 1544, 1577
BanI GGYRCC 3 cut(s) 1198, 1255, 1543
BanII GRGCYC 2 cut(s) 715, 1127
BauI CACGAG 1 cut(s) 1503
Bbv12I GWGCWC 5 cut(s) 715, 1127, 1368, 1410, 1452
BbvI GCAGC 1 cut(s) 772
BccI CCATC 6 cut(s) 285, 331, 840, 1229, 1354, 1534
BceAI ACGGC 1 cut(s) 1234
BciT130I CCWGG 2 cut(s) 1068, 1587
BcoDI GTCTC 2 cut(s) 157, 171
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 1 cut(s) 1031
BfmI CTRYAG 2 cut(s) 105, 1553
BfrI CTTAAG 1 cut(s) 115
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 1068, 1587
Bme18I GGWCC 2 cut(s) 1160, 1178
BmgT120I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
BmiI GGNNCC 6 cut(s) 135, 1162, 1200, 1222, 1257, 1545
BmrFI CCNGG 2 cut(s) 1068, 1587
BmsI GCATC 2 cut(s) 56, 634
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 1000
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 48, 754, 772, 1066, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 1068, 1587
BseDI CCNNGG 5 cut(s) 48, 754, 772, 1066, 1205
BseGI GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BseJI GATNNNNATC 1 cut(s) 435
BseMII CTCAG 5 cut(s) 28, 168, 524, 726, 1110
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 6 cut(s) 1203, 1260, 1368, 1410, 1452, 1494
BseXI GCAGC 1 cut(s) 772
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 4 cut(s) 895, 921, 1221, 1278
BshNI GGYRCC 3 cut(s) 1198, 1255, 1543
BsiHKAI GWGCWC 5 cut(s) 715, 1127, 1368, 1410, 1452
BslFI GGGAC 3 cut(s) 526, 1146, 1309
BsmAI GTCTC 2 cut(s) 157, 171
BsmFI GGGAC 3 cut(s) 526, 1146, 1309
BsmI GAATGC 1 cut(s) 1596
BsnI GGCC 4 cut(s) 895, 921, 1221, 1278
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 8 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452, 1494
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BspACI CCGC 2 cut(s) 788, 1472
BspANI GGCC 4 cut(s) 895, 921, 1221, 1278
BspCNI CTCAG 5 cut(s) 27, 167, 525, 727, 1111
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 6 cut(s) 135, 1162, 1200, 1222, 1257, 1545
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 5 cut(s) 60, 151, 431, 875, 947
BspT104I TTCGAA 1 cut(s) 779
BspT107I GGYRCC 3 cut(s) 1198, 1255, 1543
BspTI CTTAAG 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 5 cut(s) 48, 754, 772, 1066, 1205
BssMI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BssSI CACGAG 1 cut(s) 1503
BssT1I CCWWGG 3 cut(s) 754, 772, 1205
Bst2BI CACGAG 1 cut(s) 1503
Bst2UI CCWGG 2 cut(s) 1068, 1587
Bst4CI ACNGT 4 cut(s) 130, 1160, 1416, 1458
Bst6I CTCTTC 1 cut(s) 594
BstAFI CTTAAG 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 779
BstDEI CTNAG 6 cut(s) 14, 154, 533, 735, 1000, 1119
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 8 cut(s) 55, 146, 439, 549, 625, 883, 892, 942
BstMAI GTCTC 2 cut(s) 157, 171
BstMBI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
BstMWI GCNNNNNNNGC 1 cut(s) 1001
BstNI CCWGG 2 cut(s) 1068, 1587
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 1066, 1585
BstSFI CTRYAG 2 cut(s) 105, 1553
BstSLI GKGCMC 6 cut(s) 1203, 1260, 1368, 1410, 1452, 1494
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 772
BstX2I RGATCY 3 cut(s) 436, 880, 939
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 3 cut(s) 436, 880, 939
BsuRI GGCC 4 cut(s) 895, 921, 1221, 1278
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 8 cut(s) 190, 296, 429, 625, 646, 851, 1099, 1370
BveI ACCTGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 1444
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
Csp6I GTAC 7 cut(s) 567, 1187, 1244, 1382, 1424, 1466, 1508
CviAII CATG 3 cut(s) 564, 682, 1337
CviQI GTAC 7 cut(s) 567, 1187, 1244, 1382, 1424, 1466, 1508
DdeI CTNAG 6 cut(s) 14, 154, 533, 735, 1000, 1119
DpnI GATC 8 cut(s) 54, 145, 438, 548, 624, 882, 891, 941
DpnII GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 2 cut(s) 893, 919
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 2 cut(s) 713, 1125
Eco130I CCWWGG 3 cut(s) 754, 772, 1205
Eco24I GRGCYC 2 cut(s) 715, 1127
Eco47I GGWCC 2 cut(s) 1160, 1178
Eco53kI GAGCTC 2 cut(s) 713, 1125
Eco57I CTGAAG 2 cut(s) 1418, 1505
EcoICRI GAGCTC 2 cut(s) 713, 1125
EcoRII CCWGG 2 cut(s) 1066, 1585
EcoT14I CCWWGG 3 cut(s) 754, 772, 1205
EcoT38I GRGCYC 2 cut(s) 715, 1127
ErhI CCWWGG 3 cut(s) 754, 772, 1205
FaeI CATG 3 cut(s) 567, 685, 1340
FalI AAGNNNNNCTT 2 cut(s) 1282, 1314
FaqI GGGAC 3 cut(s) 526, 1146, 1309
FatI CATG 3 cut(s) 563, 681, 1336
Fnu4HI GCNGC 1 cut(s) 786
FokI GGATG 8 cut(s) 197, 303, 436, 632, 653, 858, 1086, 1357
FriOI GRGCYC 2 cut(s) 715, 1127
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 1 cut(s) 1031
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 786
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 4 cut(s) 895, 921, 1221, 1278
HhaI GCGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 567, 685, 1340
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 3 cut(s) 101, 961, 1319
HphI GGTGA 4 cut(s) 478, 1404, 1446, 1506
Hpy166II GTNNAC 4 cut(s) 569, 1366, 1408, 1450
Hpy188III TCNNGA 9 cut(s) 56, 80, 449, 593, 813, 945, 965, 1134, 1503
Hpy8I GTNNAC 4 cut(s) 569, 1366, 1408, 1450
HpyAV CCTTC 4 cut(s) 262, 463, 775, 1028
HpyCH4III ACNGT 4 cut(s) 130, 1160, 1416, 1458
HpyCH4IV ACGT 3 cut(s) 28, 655, 1051
HpyF10VI GCNNNNNNNGC 1 cut(s) 1001
HpyF3I CTNAG 6 cut(s) 14, 154, 533, 735, 1000, 1119
HpySE526I ACGT 3 cut(s) 28, 655, 1051
Hsp92II CATG 3 cut(s) 567, 685, 1340
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
LmnI GCTCC 2 cut(s) 92, 133
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 2 cut(s) 56, 634
MaeI CTAG 1 cut(s) 1031
MaeII ACGT 3 cut(s) 28, 655, 1051
MaeIII GTNAC 6 cut(s) 84, 965, 986, 1070, 1416, 1458
MalI GATC 8 cut(s) 54, 145, 438, 548, 624, 882, 891, 941
MboI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
MboII GAAGA 7 cut(s) 68, 213, 243, 541, 581, 699, 890
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 3 cut(s) 436, 880, 939
MhlI GDGCHC 8 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452, 1494
MluCI AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
MlyI GAGTC 3 cut(s) 110, 970, 1313
MmeI TCCRAC 1 cut(s) 1060
MseI TTAA 5 cut(s) 116, 263, 627, 693, 1080
MslI CAYNNNNRTG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 1068, 1587
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 1596
MvaI CCWGG 2 cut(s) 1068, 1587
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 1001
NdeII GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
NlaIII CATG 3 cut(s) 567, 685, 1340
NlaIV GGNNCC 6 cut(s) 135, 1162, 1200, 1222, 1257, 1545
NmuCI GTSAC 3 cut(s) 965, 1416, 1458
NspI RCATGY 1 cut(s) 567
NspV TTCGAA 1 cut(s) 779
PaqCI CACCTGC 1 cut(s) 580
PciI ACATGT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PctI GAATGC 1 cut(s) 1596
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 3 cut(s) 109, 969, 1313
PpsI GAGTC 3 cut(s) 109, 969, 1313
Ppu21I YACGTR 1 cut(s) 29
PscI ACATGT 1 cut(s) 563
PsiI TTATAA 2 cut(s) 1155, 1272
Psp124BI GAGCTC 2 cut(s) 715, 1127
Psp6I CCWGG 2 cut(s) 1066, 1585
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 1066, 1585
PspN4I GGNNCC 6 cut(s) 135, 1162, 1200, 1222, 1257, 1545
PspPI GGNCC 4 cut(s) 1160, 1178, 1220, 1277
PstNI CAGNNNCTG 1 cut(s) 1444
PsuI RGATCY 3 cut(s) 436, 880, 939
RsaI GTAC 7 cut(s) 568, 1188, 1245, 1383, 1425, 1467, 1509
RsaNI GTAC 7 cut(s) 567, 1187, 1244, 1382, 1424, 1466, 1508
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 2 cut(s) 715, 1127
SaqAI TTAA 5 cut(s) 116, 263, 627, 693, 1080
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 8 cut(s) 52, 143, 436, 546, 622, 880, 889, 939
Sau96I GGNCC 4 cut(s) 1160, 1178, 1220, 1277
SchI GAGTC 3 cut(s) 110, 970, 1313
ScrFI CCNGG 2 cut(s) 1068, 1587
SduI GDGCHC 8 cut(s) 715, 1127, 1203, 1260, 1368, 1410, 1452, 1494
SfaNI GCATC 2 cut(s) 56, 634
SfcI CTRYAG 2 cut(s) 105, 1553
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 2 cut(s) 1160, 1178
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 115, 634
SmoI CTYRAG 2 cut(s) 115, 634
SpeI ACTAGT 1 cut(s) 1030
Sse9I AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
SsiI CCGC 2 cut(s) 788, 1472
SspI AATATT 2 cut(s) 1078, 1109
SspMI CTAG 1 cut(s) 1031
SstI GAGCTC 2 cut(s) 715, 1127
StyD4I CCNGG 2 cut(s) 1066, 1585
StyI CCWWGG 3 cut(s) 754, 772, 1205
TaaI ACNGT 4 cut(s) 130, 1160, 1416, 1458
TaiI ACGT 3 cut(s) 31, 658, 1054
TaqI TCGA 2 cut(s) 55, 779
TasI AATT 8 cut(s) 72, 192, 499, 520, 576, 704, 798, 901
TatI WGTACW 5 cut(s) 566, 1381, 1423, 1465, 1507
Tru1I TTAA 5 cut(s) 116, 263, 627, 693, 1080
Tru9I TTAA 5 cut(s) 116, 263, 627, 693, 1080
TseFI GTSAC 3 cut(s) 965, 1416, 1458
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 3 cut(s) 965, 1416, 1458
TspDTI ATGAA 7 cut(s) 281, 298, 416, 440, 513, 733, 738
TspGWI ACGGA 2 cut(s) 65, 632
Vha464I CTTAAG 1 cut(s) 115
VneI GTGCAC 3 cut(s) 1364, 1406, 1448
VpaK11BI GGWCC 2 cut(s) 1160, 1178
XapI RAATTY 3 cut(s) 72, 798, 901
XceI RCATGY 1 cut(s) 567
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.