Rorug01G0340500

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001926
Physical Location & Seq
Reverse (-)
45836800 .. 45843298
6499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0340500.1

Sequence Viewer

Length: 2742 bp
ATGCGACGGAAGCCCCAGACTGGTTCCTCTTCAGCACAACCACAACCACAACCACAACCAGAACAAGAACCAACTCAAAACCCAAGTGTCACCACCCCATGGGTTGTTCAGAGGCCACAGCGATCACCCTTTGTCTGGCTCACCTTGTTCGCAGCCATCACATACTCGTGTTGGGGCGTTTATCATTACCAGTTCGAGTCCCTCCCCGCCCCTCTCACCCCTGACCAGGCCGGAAAGCGAGGCTTCTCCGAGTTCTCTGCTCGGAAACACGTCAAGGTTCTGACCCAGTTGGGCCCTCACCCTGTTGCCTCTGAAGCCATCACTCTTGCTCAGCAGTATGTGTTGGCAGAAGCAGAGGAGATTAAGAAAACGGCTCATTGGGAAGTTGATGTGGAGGTGGACTCGTTTGTTGCGAAAACAGGAGCGAATCAAATGAAGAGTGGATTGTTTAAGGGGAAAACACTTGTGTATTCGGATTTGAATCACATTGTTGTAAGAATCTCGCCCAAGTATTCACCTGTTTCTGTGGACAATGCTGTTCTGGTGTCTTCTCACATTGACACTGTCTTCTCAACAGGAGGGGCCGGAGATTGCAGTTCGTGTGTGGCTGTTATGTTGGAACTTGCTCGTGGAGTTTCGCAGTGGGCGCATGGATTTAAGCATGCTGTTATATTTTTGTTTAACACTGGGGAGGAGGAAGGTCTAAATGGTGCTCATAGCTTTATAACTCAGCATCCATGGAGCAGTACGATTCGTCTGGCTATTGATTTGGAGGCCATGGGTATTGGAGGGAAGTCTGGCATATTTCAGGCTGGTCCTCATCCTTGGGCTATTGAGAATTATGCTGCAGTAGCGAAATACCCATCTGGCCACATAATAGGACAGGATATATTTTCCTCTGGAGCCATCAAATCTGCAACAGATTTCCAAGTATACAAAGAGCTAGCTGGCCTTTCAGGCCTTGACTTTGCTTACTCAGATAACAGTGCAGTATACCACACGAAGAATGACAAATTCGAGCTTCTTCAATTGGGATCTCTTCAACATCTTGGAGAAAATATGCTTGCTTTTCTGCTCCGGGTTGCTGCATCCTCTCATCTTCCAAAAGCCAGTACAATGGAAGAAGAGGATAAAACAGGCCTGAGTTCTGCCATATATTTTGACATTTTGGGGATGTACATGATTGTCTACCGTCAACGCTTCGCCAGAATGCTTCATAATTCAGTGATAGCGCAATCACTTCTTATATGGACTACATCATTACTTATGGGTGGTTATCCAGCTGCAGTATCATTGGTCTTGTCATGTTTAAGTGTCATTCTTATGTGGACATTTGCATTAAGTTTCTCTGTTATTGTGGCCTTTATTATACCCCTAATATCGTCATCACCAGTGCCATATGTCGCAAACCCATGGCTTGTAGTTGGGTTATTCGCTGCACCTGCTCTGCTTGGAGCATTAACTGGTCAATATTTGGGTTATCTTGTTCTTCATACGTATTTGGCAAACGCTTACTCCAAGAAAAAACAGCTGTCACCTGCTATCCGAGCCGATTTGGTTAAATTAGAGGCTGAAAGATGGCTCTACAAAGCTGGATCAATTCAATGGCTCATTCTCCTCTGTTTGGGAACCTATTACAGAATTGGATCGTCTTATCTGGCTCTTGCTTGGTTGGTTCCACCAGCATTCGCATATGGCTTTCTTGAAGCAACTCTAAGCCCAGTCCGATTACCTAAGCCACTGAAACTTGCAACTCTGCTGATAGGATTAGCTGTACCGATAGTACTGTCTGCTGGCGTATTCATTAGGGTGGCTGGCACAATAATCGGGACCATGGTTCGTTTTGATAGGAATCCTGGTGGCACTCCTTATTGGCTGGGAAATGTTATACTTGCTGTTTTTGTTTCTGCTGTCATGTGCCTGACTTTGGTGTATCTTCTTTCATACATTCATCTTTCAGGTGCCAAGAGATTGATTGTTCTCTCAACTTGCGCCTTGTTTTGCCTCTCGCTTGCTCTTGTATTATCTGGTACTGTACCAGCATTTACCAAAGACGCATCAAGAGCTGTAAATGTTGTGCATGTTGTAGATACTACAAGAAGCATTGAAGATCCTAGATCCTATGTGTCTCTGTTTTCTTCAACTCCTGGAAAATTGACAAAGGAGGTTGAGCTAATTAATGAAGGTTTCAGATGTGGTCGAGATCAGGTCTTTGATTTTGTAACTTTTACAGTGAAATACGGCTGTTGGACTGAGGATGACAGTGACAGTGGGTGGAGTGAAGCAGACATTCCCATAATGCATGTTCAGAGTGATACTCAAGATATTGAAAGAACAACACAAGTTTTAATTGATACGAAGGGTTCATTACGGTGGTCTCTTGCAATAAACATGGATGAAATACGGGATTTTGCATTCACAGATGCTGGAAACTCTGAGGAATTGGTTTCAGTTGGTGACAAGAGCGCTGTAGATGGTTGGCATGTTATTCAGTTTGCCGGGGGAAACAATTCACCAACGAAGTTTGGTCTGACTCTCTTCTGGACCAAAAACTCTACCCTTAAGGCGGACGGGAAGAGAGATGAGCAAGCTCCCCTTCTCAAGTTAAGAACTGATATGGACATTGTAACACCGAAAGTCGAAAGAGTTCTTTCAAAGCTTCCTACTTGGTGTTCACTGTTTGGCAAGTCCACGTCTCCCTACACCTTTGCATTCTTAAGTAGTCTTCCTGTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

913

Amino Acids

100.04

Weight (kDa)

6.88

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 163 - 357 5.6e-45 Peptidase family M28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
AarI CACCTGC 2 cut(s) 1450, 1546
Acc36I ACCTGC 2 cut(s) 1450, 1546
AccB1I GGYRCC 1 cut(s) 1961
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 3 cut(s) 933, 993, 1188
AciI CCGC 2 cut(s) 207, 2567
AclWI GGATC 5 cut(s) 1042, 1603, 1654, 2105, 2112
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 1 cut(s) 1013
AcuI CTGAAG 2 cut(s) 15, 333
AfaI GTAC 7 cut(s) 748, 1114, 1178, 1776, 1785, 2032, 2037
AfeI AGCGCT 1 cut(s) 2467
AfiI CCNNNNNNNGG 7 cut(s) 20, 99, 135, 226, 1624, 1927, 2566
AflII CTTAAG 2 cut(s) 2561, 2716
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 9 cut(s) 481, 1028, 1043, 1604, 1706, 2108, 2142, 2330, 2655
AjiI CACGTC 2 cut(s) 271, 2694
AjnI CCWGG 3 cut(s) 225, 1855, 2146
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 3 cut(s) 2133, 2382, 2700
AlwI GGATC 5 cut(s) 1042, 1603, 1654, 2105, 2112
AlwNI CAGNNNCTG 1 cut(s) 2426
Aor51HI AGCGCT 1 cut(s) 2467
ApaI GGGCCC 1 cut(s) 296
ApeKI GCWGC 5 cut(s) 152, 845, 1085, 1283, 1436
ApoI RAATTY 1 cut(s) 1013
AseI ATTAAT 1 cut(s) 2178
Asp700I GAANNNNTTC 2 cut(s) 2509, 2646
AspLEI GCGC 4 cut(s) 649, 1234, 1994, 2468
AspS9I GGNCC 6 cut(s) 292, 293, 582, 815, 1830, 2544
AsuC2I CCSGG 2 cut(s) 1079, 2500
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 3 cut(s) 815, 1830, 2544
BaeGI GKGCMC 1 cut(s) 296
BalI TGGCCA 1 cut(s) 870
BanI GGYRCC 1 cut(s) 1961
BanII GRGCYC 1 cut(s) 296
BauI CACGAG 2 cut(s) 166, 627
BbsI GAAGAC 3 cut(s) 540, 559, 2717
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 5 cut(s) 164, 832, 1072, 1270, 1423
BccI CCATC 6 cut(s) 164, 326, 871, 914, 1572, 2468
BceAI ACGGC 2 cut(s) 387, 2257
BcgI CGANNNNNNTGC 4 cut(s) 239, 273, 1807, 1841
BciT130I CCWGG 3 cut(s) 227, 1857, 2148
BcnI CCSGG 2 cut(s) 1079, 2500
BcoDI GTCTC 3 cut(s) 2133, 2382, 2700
BfaI CTAG 2 cut(s) 944, 2115
BfmI CTRYAG 3 cut(s) 846, 1284, 2469
BfoI RGCGCY 1 cut(s) 2469
BfrI CTTAAG 2 cut(s) 2561, 2716
BfuAI ACCTGC 2 cut(s) 1450, 1546
BglI GCCNNNNNGGC 1 cut(s) 957
BisI GCNGC 5 cut(s) 153, 846, 1086, 1284, 1437
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 5 cut(s) 154, 847, 1087, 1285, 1438
BmcAI AGTACT 1 cut(s) 1785
Bme1390I CCNGG 5 cut(s) 227, 1079, 1857, 2148, 2500
Bme18I GGWCC 3 cut(s) 815, 1830, 2544
BmgBI CACGTC 2 cut(s) 271, 2694
BmgT120I GGNCC 6 cut(s) 292, 293, 582, 815, 1830, 2544
BmiI GGNNCC 8 cut(s) 25, 294, 583, 904, 1630, 1677, 1831, 1963
BmrFI CCNGG 5 cut(s) 227, 1079, 1857, 2148, 2500
BmrI ACTGGG 3 cut(s) 280, 696, 1715
BmsI GCATC 4 cut(s) 742, 1097, 2066, 2413
BmtI GCTAGC 1 cut(s) 947
BmuI ACTGGG 3 cut(s) 280, 696, 1715
BpiI GAAGAC 3 cut(s) 540, 559, 2717
BplI GAGNNNNNCTC 4 cut(s) 386, 418, 2302, 2334
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 1734
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 2304, 2585
BpuMI CCSGG 2 cut(s) 1079, 2500
BsaAI YACGTR 1 cut(s) 1497
BsaBI GATNNNNATC 2 cut(s) 480, 1851
BsaI GGTCTC 1 cut(s) 2382
BsaJI CCNNGG 7 cut(s) 98, 737, 777, 824, 1412, 1833, 2499
BsaXI ACNNNNNCTCC 2 cut(s) 1499, 1529
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 99, 135, 226, 1624, 1927, 2566
Bse1I ACTGG 8 cut(s) 25, 190, 286, 691, 1110, 1391, 1468, 1721
Bse8I GATNNNNATC 2 cut(s) 480, 1851
BseBI CCWGG 3 cut(s) 227, 1857, 2148
BseDI CCNNGG 7 cut(s) 98, 737, 777, 824, 1412, 1833, 2499
BseGI GGATG 6 cut(s) 733, 820, 1088, 1179, 2263, 2401
BseJI GATNNNNATC 2 cut(s) 480, 1851
BseLI CCNNNNNNNGG 7 cut(s) 20, 99, 135, 226, 1624, 1927, 2566
BseMII CTCAG 6 cut(s) 344, 743, 990, 1133, 2244, 2427
BseNI ACTGG 8 cut(s) 25, 190, 286, 691, 1110, 1391, 1468, 1721
BseRI GAGGAG 3 cut(s) 371, 707, 1607
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 5 cut(s) 164, 832, 1072, 1270, 1423
BseYI CCCAGC 1 cut(s) 1876
BsgI GTGCAG 2 cut(s) 1008, 1422
BshNI GGYRCC 1 cut(s) 1961
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 4 cut(s) 231, 585, 1078, 2499
BslFI GGGAC 2 cut(s) 184, 1843
BslI CCNNNNNNNGG 7 cut(s) 20, 99, 135, 226, 1624, 1927, 2566
BsmAI GTCTC 3 cut(s) 2133, 2382, 2700
BsmBI CGTCTC 1 cut(s) 2700
BsmFI GGGAC 2 cut(s) 184, 1843
BsmI GAATGC 4 cut(s) 1215, 1685, 2414, 2711
Bso31I GGTCTC 1 cut(s) 2382
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 296, 715
Bsp1407I TGTACA 1 cut(s) 1176
Bsp143I GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 5 cut(s) 98, 737, 777, 1412, 1833
BspACI CCGC 2 cut(s) 207, 2567
BspCNI CTCAG 6 cut(s) 343, 742, 989, 1134, 2245, 2428
BspLI GGNNCC 8 cut(s) 25, 294, 583, 904, 1630, 1677, 1831, 1963
BspMAI CTGCAG 2 cut(s) 850, 1288
BspMI ACCTGC 2 cut(s) 1450, 1546
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 5 cut(s) 1042, 1603, 1654, 2105, 2112
BspT107I GGYRCC 1 cut(s) 1961
BspTI CTTAAG 2 cut(s) 2561, 2716
BspTNI GGTCTC 1 cut(s) 2382
BsrGI TGTACA 1 cut(s) 1176
BsrI ACTGG 8 cut(s) 25, 190, 286, 691, 1110, 1391, 1468, 1721
BssECI CCNNGG 7 cut(s) 98, 737, 777, 824, 1412, 1833, 2499
BssMI GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
BssNAI GTATAC 2 cut(s) 934, 994
BssSI CACGAG 2 cut(s) 166, 627
BssT1I CCWWGG 6 cut(s) 98, 737, 777, 824, 1412, 1833
Bst1107I GTATAC 2 cut(s) 934, 994
Bst2BI CACGAG 2 cut(s) 166, 627
Bst2UI CCWGG 3 cut(s) 227, 1857, 2148
Bst6I CTCTTC 6 cut(s) 34, 431, 1044, 1119, 2543, 2570
BstAFI CTTAAG 2 cut(s) 2561, 2716
BstAUI TGTACA 1 cut(s) 1176
BstBAI YACGTR 1 cut(s) 1497
BstC8I GCNNGC 8 cut(s) 663, 945, 949, 1065, 1795, 1816, 2013, 2589
BstDEI CTNAG 8 cut(s) 330, 729, 976, 1142, 1715, 1734, 2253, 2436
BstDSI CCRYGG 5 cut(s) 98, 737, 777, 1412, 1833
BstF5I GGATG 6 cut(s) 733, 820, 1088, 1179, 2263, 2401
BstH2I RGCGCY 1 cut(s) 2469
BstHHI GCGC 4 cut(s) 649, 1234, 1994, 2468
BstKTI GATC 7 cut(s) 125, 1037, 1598, 1649, 2113, 2120, 2206
BstMAI GTCTC 3 cut(s) 2133, 2382, 2700
BstMBI GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
BstMWI GCNNNNNNNGC 8 cut(s) 10, 314, 646, 851, 957, 1442, 1547, 2063
BstNI CCWGG 3 cut(s) 227, 1857, 2148
BstNSI RCATGY 4 cut(s) 665, 2084, 2306, 2486
BstSCI CCNGG 5 cut(s) 225, 1077, 1855, 2146, 2498
BstSFI CTRYAG 3 cut(s) 846, 1284, 2469
BstSLI GKGCMC 1 cut(s) 296
BstSNI TACGTA 1 cut(s) 1497
BstV1I GCAGC 5 cut(s) 164, 832, 1072, 1270, 1423
BstV2I GAAGAC 3 cut(s) 540, 559, 2717
BstX2I RGATCY 3 cut(s) 1034, 2110, 2117
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 3 cut(s) 1034, 2110, 2117
BstZ17I GTATAC 2 cut(s) 934, 994
BtgI CCRYGG 5 cut(s) 98, 737, 777, 1412, 1833
BtrI CACGTC 2 cut(s) 271, 2694
BtsCI GGATG 6 cut(s) 733, 820, 1088, 1179, 2263, 2401
BtsI GCAGTG 1 cut(s) 647
BveI ACCTGC 2 cut(s) 1450, 1546
Cac8I GCNNGC 8 cut(s) 663, 945, 949, 1065, 1795, 1816, 2013, 2589
CaiI CAGNNNCTG 1 cut(s) 2426
CfoI GCGC 4 cut(s) 649, 1234, 1994, 2468
Cfr13I GGNCC 6 cut(s) 292, 293, 582, 815, 1830, 2544
CseI GACGC 1 cut(s) 2063
Csp6I GTAC 7 cut(s) 747, 1113, 1177, 1775, 1784, 2031, 2036
CviQI GTAC 7 cut(s) 747, 1113, 1177, 1775, 1784, 2031, 2036
DdeI CTNAG 8 cut(s) 330, 729, 976, 1142, 1715, 1734, 2253, 2436
DpnI GATC 7 cut(s) 124, 1036, 1597, 1648, 2112, 2119, 2205
DpnII GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 6 cut(s) 34, 431, 1044, 1119, 2543, 2570
EarI CTCTTC 6 cut(s) 34, 431, 1044, 1119, 2543, 2570
EciI GGCGGA 1 cut(s) 2582
Eco105I TACGTA 1 cut(s) 1497
Eco130I CCWWGG 6 cut(s) 98, 737, 777, 824, 1412, 1833
Eco147I AGGCCT 2 cut(s) 960, 1140
Eco24I GRGCYC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 2382
Eco47I GGWCC 3 cut(s) 815, 1830, 2544
Eco47III AGCGCT 1 cut(s) 2467
Eco57I CTGAAG 2 cut(s) 15, 333
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 3 cut(s) 225, 1855, 2146
EcoT14I CCWWGG 6 cut(s) 98, 737, 777, 824, 1412, 1833
EcoT22I ATGCAT 1 cut(s) 2304
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 6 cut(s) 98, 737, 777, 824, 1412, 1833
Esp3I CGTCTC 1 cut(s) 2700
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 2580, 2612
FaqI GGGAC 2 cut(s) 184, 1843
FauI CCCGC 1 cut(s) 214
FauNDI CATATG 2 cut(s) 1399, 1693
FblI GTMKAC 3 cut(s) 933, 993, 1188
Fnu4HI GCNGC 5 cut(s) 153, 846, 1086, 1284, 1437
FokI GGATG 6 cut(s) 720, 807, 1075, 1186, 2270, 2408
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 5 cut(s) 153, 846, 1086, 1284, 1437
FspBI CTAG 2 cut(s) 944, 2115
GlaI GCGC 4 cut(s) 648, 1233, 1993, 2467
GluI GCNGC 5 cut(s) 153, 846, 1086, 1284, 1437
GsaI CCCAGC 1 cut(s) 1880
GsuI CTGGAG 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 2469
HapII CCGG 4 cut(s) 231, 585, 1078, 2499
HgaI GACGC 1 cut(s) 2063
HhaI GCGC 4 cut(s) 649, 1234, 1994, 2468
Hin6I GCGC 4 cut(s) 647, 1232, 1992, 2466
HinP1I GCGC 4 cut(s) 647, 1232, 1992, 2466
HincII GTYRAC 1 cut(s) 1196
HindII GTYRAC 1 cut(s) 1196
HindIII AAGCTT 1 cut(s) 2657
HinfI GANTC 8 cut(s) 197, 401, 427, 481, 498, 751, 1852, 2533
HpaII CCGG 4 cut(s) 231, 585, 1078, 2499
Hpy166II GTNNAC 9 cut(s) 400, 529, 934, 994, 1189, 1196, 1329, 2675, 2691
Hpy188III TCNNGA 7 cut(s) 900, 1703, 1828, 2061, 2201, 2321, 2542
Hpy8I GTNNAC 9 cut(s) 400, 529, 934, 994, 1189, 1196, 1329, 2675, 2691
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 4 cut(s) 692, 2177, 2353, 2606
HpyCH4IV ACGT 3 cut(s) 270, 1496, 2693
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 314, 646, 851, 957, 1442, 1547, 2063
HpyF3I CTNAG 8 cut(s) 330, 729, 976, 1142, 1715, 1734, 2253, 2436
HpySE526I ACGT 3 cut(s) 270, 1496, 2693
HspAI GCGC 4 cut(s) 647, 1232, 1992, 2466
Kzo9I GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
LmnI GCTCC 6 cut(s) 422, 741, 902, 1080, 1454, 2596
Lsp1109I GCAGC 5 cut(s) 164, 832, 1072, 1270, 1423
LweI GCATC 4 cut(s) 742, 1097, 2066, 2413
MaeI CTAG 2 cut(s) 944, 2115
MaeII ACGT 3 cut(s) 270, 1496, 2693
MaeIII GTNAC 6 cut(s) 88, 1533, 2221, 2264, 2456, 2626
MalI GATC 7 cut(s) 124, 1036, 1597, 1648, 2112, 2119, 2205
MboI GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
MfeI CAATTG 1 cut(s) 1028
MflI RGATCY 3 cut(s) 1034, 2110, 2117
MhlI GDGCHC 2 cut(s) 296, 715
MlsI TGGCCA 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 3 cut(s) 206, 395, 2527
MmeI TCCRAC 2 cut(s) 597, 2228
Mox20I TGGCCA 1 cut(s) 870
Mph1103I ATGCAT 1 cut(s) 2304
MroXI GAANNNNTTC 2 cut(s) 2509, 2646
MscI TGGCCA 1 cut(s) 870
MslI CAYNNNNRTG 4 cut(s) 166, 1322, 1808, 2371
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 2 cut(s) 1283, 1531
MspCI CTTAAG 2 cut(s) 2561, 2716
MspI CCGG 4 cut(s) 231, 585, 1078, 2499
MspR9I CCNGG 5 cut(s) 227, 1079, 1857, 2148, 2500
MunI CAATTG 1 cut(s) 1028
Mva1269I GAATGC 4 cut(s) 1215, 1685, 2414, 2711
MvaI CCWGG 3 cut(s) 227, 1857, 2148
MwoI GCNNNNNNNGC 8 cut(s) 10, 314, 646, 851, 957, 1442, 1547, 2063
NciI CCSGG 2 cut(s) 1079, 2500
NcoI CCATGG 5 cut(s) 98, 737, 777, 1412, 1833
NdeI CATATG 2 cut(s) 1399, 1693
NdeII GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
NheI GCTAGC 1 cut(s) 943
NlaIV GGNNCC 8 cut(s) 25, 294, 583, 904, 1630, 1677, 1831, 1963
NmuCI GTSAC 4 cut(s) 88, 1533, 2264, 2456
NsiI ATGCAT 1 cut(s) 2304
NspI RCATGY 4 cut(s) 665, 2084, 2306, 2486
PaeI GCATGC 1 cut(s) 665
PaqCI CACCTGC 2 cut(s) 1450, 1546
PceI AGGCCT 2 cut(s) 960, 1140
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PctI GAATGC 4 cut(s) 1215, 1685, 2414, 2711
PdmI GAANNNNTTC 2 cut(s) 2509, 2646
PfeI GAWTC 5 cut(s) 427, 481, 498, 751, 1852
PflFI GACNNNGTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 2146
PkrI GCNGC 5 cut(s) 154, 847, 1087, 1285, 1438
PleI GAGTC 3 cut(s) 205, 395, 2527
PpsI GAGTC 3 cut(s) 205, 395, 2527
Ppu21I YACGTR 1 cut(s) 1497
PshBI ATTAAT 1 cut(s) 2178
PsiI TTATAA 1 cut(s) 725
Psp6I CCWGG 3 cut(s) 225, 1855, 2146
PspFI CCCAGC 1 cut(s) 1876
PspGI CCWGG 3 cut(s) 225, 1855, 2146
PspN4I GGNNCC 8 cut(s) 25, 294, 583, 904, 1630, 1677, 1831, 1963
PspOMI GGGCCC 1 cut(s) 292
PspPI GGNCC 6 cut(s) 292, 293, 582, 815, 1830, 2544
PstI CTGCAG 2 cut(s) 850, 1288
PstNI CAGNNNCTG 1 cut(s) 2426
PsuI RGATCY 3 cut(s) 1034, 2110, 2117
PsyI GACNNNGTC 1 cut(s) 563
PvuII CAGCTG 2 cut(s) 1283, 1531
RsaI GTAC 7 cut(s) 748, 1114, 1178, 1776, 1785, 2032, 2037
RsaNI GTAC 7 cut(s) 747, 1113, 1177, 1775, 1784, 2031, 2036
RseI CAYNNNNRTG 4 cut(s) 166, 1322, 1808, 2371
SatI GCNGC 5 cut(s) 153, 846, 1086, 1284, 1437
Sau3AI GATC 7 cut(s) 122, 1034, 1595, 1646, 2110, 2117, 2203
Sau96I GGNCC 6 cut(s) 292, 293, 582, 815, 1830, 2544
ScaI AGTACT 1 cut(s) 1785
SchI GAGTC 3 cut(s) 206, 395, 2527
ScrFI CCNGG 5 cut(s) 227, 1079, 1857, 2148, 2500
SduI GDGCHC 2 cut(s) 296, 715
SfaNI GCATC 4 cut(s) 742, 1097, 2066, 2413
SfcI CTRYAG 3 cut(s) 846, 1284, 2469
SfiI GGCCNNNNNGGCC 1 cut(s) 957
SinI GGWCC 3 cut(s) 815, 1830, 2544
SmiMI CAYNNNNRTG 4 cut(s) 166, 1322, 1808, 2371
SmlI CTYRAG 4 cut(s) 2319, 2561, 2600, 2716
SmoI CTYRAG 4 cut(s) 2319, 2561, 2600, 2716
SnaBI TACGTA 1 cut(s) 1497
SphI GCATGC 1 cut(s) 665
SseBI AGGCCT 2 cut(s) 960, 1140
SsiI CCGC 2 cut(s) 207, 2567
SspI AATATT 1 cut(s) 1472
SspMI CTAG 2 cut(s) 944, 2115
StuI AGGCCT 2 cut(s) 960, 1140
StyD4I CCNGG 5 cut(s) 225, 1077, 1855, 2146, 2498
StyI CCWWGG 6 cut(s) 98, 737, 777, 824, 1412, 1833
TaiI ACGT 3 cut(s) 273, 1499, 2696
TaqI TCGA 4 cut(s) 195, 1017, 2200, 2640
TatI WGTACW 3 cut(s) 1112, 1176, 1783
TfiI GAWTC 5 cut(s) 427, 481, 498, 751, 1852
TseFI GTSAC 4 cut(s) 88, 1533, 2264, 2456
TseI GCWGC 5 cut(s) 152, 845, 1085, 1283, 1436
Tsp45I GTSAC 4 cut(s) 88, 1533, 2264, 2456
TspDTI ATGAA 9 cut(s) 449, 1205, 1481, 1792, 1932, 1940, 2196, 2355, 2412
TspGWI ACGGA 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 563
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 2 cut(s) 2561, 2716
VpaK11BI GGWCC 3 cut(s) 815, 1830, 2544
VspI ATTAAT 1 cut(s) 2178
XapI RAATTY 1 cut(s) 1013
XceI RCATGY 4 cut(s) 665, 2084, 2306, 2486
XmiI GTMKAC 3 cut(s) 933, 993, 1188
XmnI GAANNNNTTC 2 cut(s) 2509, 2646
XspI CTAG 2 cut(s) 944, 2115
ZrmI AGTACT 1 cut(s) 1785
Zsp2I ATGCAT 1 cut(s) 2304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.