Rorug01G0340400

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001926
Physical Location & Seq
Reverse (-)
45833048 .. 45835936
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0340400.1

Sequence Viewer

Length: 849 bp
ATGCGGACCGTACCGTTGGGAATCTCAGTGTCCCCAACCTCCATTAACACCACTCTCAACCTTAAACGACCAAACAACTTCCCTCTTTCCACTTCCACTTCCACTCCTAGGGTTTCTGCATCCTCCACTGACAATTTCTCTCTCCTCTCCTTCTCCAAATCTGGAGTCTGCAGAGCCAGTCAAGTGGCTGATCTATTTTCAACTGTGTCTCCTGAAATTGTTGTTCGTGAGGCGAGGTTAGAGGACTGTTGGGAGGTTGCCGAGACTCATTGCAGCTCTTTCTTCCCCGAATATGCTTTCCCTTTGGATTTTGTTCTTAGGGTTGACCGGCTGGTGGGAATGCTAGCTGGGTTTTCTTTGCCAAGTGGTTGCAAAAGGACTTGTCTGGTAGCGGTCATTGGAAACCCTGCTGATGAAACTTTCCTATTCGGAAGTGAAGATTTCAAGATTGCCGGTCTTGATGGGAAGATCAGTCTCAGTAAGAGGTATGTGGCTGGAATATTGACAGTGGATACTGTAGCTGATTTTCTTCCTAGAAAAGGTCCTCTCCGGCAGAGAAGGACTGGTATTGCATATGTATCAAACGTTGCTGTTCGGGAGAAATTTCGATGTAGAGGAATTGGTAAAAGGCTAATAGCGAAAGCAGAAGCTCAAGCAAGGAGCTGGGATTGTCGCGCCATCGCATTGCATTGTGATTTGAACAATCCGGGAGCCATAAAGCTGTACAAAGGTCAGGGTTTCAGATCTATTAAGGTGCCTGAAGGAGCAACTTGGCCTCAGCCCAAGACCGCGCCTGATGTTAGATTCAACTTCATGATGAAGCTTCTGAACAACACTACTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

282

Amino Acids

30.89

Weight (kDa)

9.61

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 182 - 247 2.2e-15 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 188 - 248 3.3e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 754
AccII CGCG 2 cut(s) 675, 791
AciI CCGC 3 cut(s) 4, 392, 789
AclI AACGTT 1 cut(s) 585
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 2 cut(s) 12, 725
AfiI CCNNNNNNNGG 3 cut(s) 108, 334, 539
AgsI TTSAA 4 cut(s) 201, 445, 700, 808
AluBI AGCT 7 cut(s) 276, 347, 521, 650, 663, 721, 823
AluI AGCT 7 cut(s) 276, 347, 521, 650, 663, 721, 823
Alw26I GTCTC 3 cut(s) 213, 257, 479
AoxI GGCC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 2 cut(s) 677, 793
AspS9I GGNCC 2 cut(s) 6, 542
AsuC2I CCSGG 1 cut(s) 708
AsuNHI GCTAGC 1 cut(s) 343
AvaII GGWCC 2 cut(s) 6, 542
AvrII CCTAGG 1 cut(s) 107
BanI GGYRCC 1 cut(s) 754
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 455, 686
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 3 cut(s) 213, 257, 479
BfaI CTAG 3 cut(s) 108, 344, 534
BfmI CTRYAG 2 cut(s) 169, 516
BfuI GTATCC 1 cut(s) 505
BglII AGATCT 1 cut(s) 743
BisI GCNGC 1 cut(s) 274
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 708
Bme18I GGWCC 2 cut(s) 6, 542
BmgT120I GGNCC 2 cut(s) 6, 542
BmiI GGNNCC 2 cut(s) 712, 756
BmrFI CCNGG 1 cut(s) 708
BmsI GCATC 1 cut(s) 128
BmtI GCTAGC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 193, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 334, 539
Bse118I RCCGGY 2 cut(s) 327, 452
Bse1I ACTGG 2 cut(s) 177, 568
Bse3DI GCAATG 2 cut(s) 268, 683
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 3 cut(s) 108, 334, 539
BseMI GCAATG 2 cut(s) 268, 683
BseMII CTCAG 3 cut(s) 39, 490, 791
BseNI ACTGG 2 cut(s) 177, 568
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 2 cut(s) 347, 663
Bsh1236I CGCG 2 cut(s) 675, 791
BshFI GGCC 1 cut(s) 775
BshNI GGYRCC 1 cut(s) 754
BsiSI CCGG 4 cut(s) 328, 453, 550, 707
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 108, 334, 539
BsmAI GTCTC 3 cut(s) 213, 257, 479
BsmFI GGGAC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 3 cut(s) 190, 468, 743
BspACI CCGC 3 cut(s) 4, 392, 789
BspANI GGCC 1 cut(s) 775
BspCNI CTCAG 3 cut(s) 38, 489, 790
BspFNI CGCG 2 cut(s) 675, 791
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 712, 756
BspMAI CTGCAG 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 268, 683
BsrFI RCCGGY 2 cut(s) 327, 452
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 2 cut(s) 177, 568
BssAI RCCGGY 2 cut(s) 327, 452
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 3 cut(s) 190, 468, 743
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 6 cut(s) 10, 15, 205, 248, 508, 517
BstAUI TGTACA 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 5 cut(s) 25, 317, 476, 777, 846
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 2 cut(s) 675, 791
BstHHI GCGC 2 cut(s) 677, 793
BstKTI GATC 3 cut(s) 193, 471, 746
BstMAI GTCTC 3 cut(s) 213, 257, 479
BstMBI GATC 3 cut(s) 190, 468, 743
BstSCI CCNGG 1 cut(s) 706
BstSFI CTRYAG 2 cut(s) 169, 516
BstUI CGCG 2 cut(s) 675, 791
BstV1I GCAGC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 743
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 1 cut(s) 743
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 775
BtgZI GCGATG 1 cut(s) 664
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 3 cut(s) 33, 126, 513
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 813
CfoI GCGC 2 cut(s) 677, 793
Cfr10I RCCGGY 2 cut(s) 327, 452
Cfr13I GGNCC 2 cut(s) 6, 542
CpoI CGGWCCG 1 cut(s) 6
Csp6I GTAC 2 cut(s) 11, 724
CspI CGGWCCG 1 cut(s) 6
CviAII CATG 1 cut(s) 814
CviQI GTAC 2 cut(s) 11, 724
DdeI CTNAG 5 cut(s) 25, 317, 476, 777, 846
DpnI GATC 3 cut(s) 192, 470, 745
DpnII GATC 3 cut(s) 190, 468, 743
Eco130I CCWWGG 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 6, 542
Eco57I CTGAAG 1 cut(s) 780
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 817
FaiI YATR 6 cut(s) 294, 489, 574, 576, 716, 815
FaqI GGGAC 1 cut(s) 16
FatI CATG 1 cut(s) 813
FauNDI CATATG 1 cut(s) 574
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 3 cut(s) 108, 344, 534
GlaI GCGC 2 cut(s) 676, 792
GluI GCNGC 1 cut(s) 274
GsaI CCCAGC 2 cut(s) 351, 667
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 775
HapII CCGG 4 cut(s) 328, 453, 550, 707
HhaI GCGC 2 cut(s) 677, 793
Hin1II CATG 1 cut(s) 817
Hin6I GCGC 2 cut(s) 675, 791
HinP1I GCGC 2 cut(s) 675, 791
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 4 cut(s) 21, 165, 265, 804
HpaII CCGG 4 cut(s) 328, 453, 550, 707
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 431, 743, 828
Hpy188III TCNNGA 7 cut(s) 162, 212, 227, 445, 458, 596, 814
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 160, 552, 755
HpyCH4III ACNGT 6 cut(s) 10, 15, 205, 248, 508, 517
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 7 cut(s) 119, 171, 273, 372, 572, 688, 842
HpyF3I CTNAG 5 cut(s) 25, 317, 476, 777, 846
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 1 cut(s) 817
HspAI GCGC 2 cut(s) 675, 791
Kzo9I GATC 3 cut(s) 190, 468, 743
LmnI GCTCC 3 cut(s) 660, 710, 764
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 128
MaeI CTAG 3 cut(s) 108, 344, 534
MaeII ACGT 1 cut(s) 585
MalI GATC 3 cut(s) 192, 470, 745
MboI GATC 3 cut(s) 190, 468, 743
MboII GAAGA 4 cut(s) 274, 449, 478, 521
MflI RGATCY 1 cut(s) 743
MluCI AATT 4 cut(s) 133, 216, 602, 618
MlyI GAGTC 2 cut(s) 174, 259
MseI TTAA 3 cut(s) 45, 63, 750
MspI CCGG 4 cut(s) 328, 453, 550, 707
MspR9I CCNGG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 345
MvnI CGCG 2 cut(s) 675, 791
NciI CCSGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 190, 468, 743
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 1 cut(s) 817
NlaIV GGNNCC 2 cut(s) 712, 756
NmeAIII GCCGAG 1 cut(s) 286
PagI TCATGA 1 cut(s) 813
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 21, 804
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 173, 259
PpsI GAGTC 2 cut(s) 173, 259
PpuMI RGGWCCY 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 542
PspFI CCCAGC 2 cut(s) 347, 663
PspN4I GGNNCC 2 cut(s) 712, 756
PspPI GGNCC 2 cut(s) 6, 542
PspPPI RGGWCCY 1 cut(s) 542
PstI CTGCAG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 743
RsaI GTAC 2 cut(s) 12, 725
RsaNI GTAC 2 cut(s) 11, 724
Rsr2I CGGWCCG 1 cut(s) 6
RsrII CGGWCCG 1 cut(s) 6
SaqAI TTAA 3 cut(s) 45, 63, 750
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 3 cut(s) 190, 468, 743
Sau96I GGNCC 2 cut(s) 6, 542
SchI GAGTC 2 cut(s) 174, 259
ScrFI CCNGG 1 cut(s) 708
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 2 cut(s) 169, 516
SinI GGWCC 2 cut(s) 6, 542
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 4 cut(s) 133, 216, 602, 618
SsiI CCGC 3 cut(s) 4, 392, 789
SspI AATATT 1 cut(s) 501
SspMI CTAG 3 cut(s) 108, 344, 534
StyD4I CCNGG 1 cut(s) 706
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 6 cut(s) 10, 15, 205, 248, 508, 517
TaiI ACGT 1 cut(s) 588
TaqI TCGA 1 cut(s) 607
TasI AATT 4 cut(s) 133, 216, 602, 618
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 21, 804
Tru1I TTAA 3 cut(s) 45, 63, 750
Tru9I TTAA 3 cut(s) 45, 63, 750
TscAI CASTG 3 cut(s) 33, 133, 513
TseI GCWGC 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 429, 802, 833
TspRI CASTG 3 cut(s) 33, 133, 513
VpaK11BI GGWCC 2 cut(s) 6, 542
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 107
XspI CTAG 3 cut(s) 108, 344, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.