Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001926

Physical Location & Seq

Genomic Coordinates Reverse (-)

45827368 .. 45828615

Gene Structure 1248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGGCTTTAGCAGAGCCAGCCTTTGTATCAGCAAATACAAAGAAAGAGGAGAAGAACAAGAAGAGAGAGGAGAAATACAAAGAGCTTGAAGAGAAGAAAAAGAAGAACAAGGAGGAGGAAGAAAGGAAGAACAAGGAGCACCTCCGCATGCTAGTGGATTTACATAGAAACAAAGAGCACAATGTTAAGCAAGTTTCAAGAGTTCCTGCTACTCGTGTTCCTCCTGTTTCTTCGGCAACGTCTTATAACAATCACCATTCACAGCCCCATGCCCCAAATGCTGGTGTCAAGGCTAGTGTAACTCATATTCCTGCTGCAGCTTGGGCAAAGGCAGTGGCACCAATTAGTGCAACTGATGTCTCTAAAAGATCTGATATCGATGGCCATTCGCAGTCCCAAGCCTCAAAAGCTCCTGTCAAAGCTGCTGAAACTCCTAATCCTACTGGTTCAGTGAAGCCTAGTAGTATTGCTATCAGTCAACAACCAGCTGCTGTAACATCTCTCTCCAGTAGTACTACTAGTACTGCTGGCTCCACAGAGACAGCCTTCTTTGTTGGACAAATCCTGGTAAAGACACCAATCAATAATCAACCAAACAATGTTTCTTTGTTTGAGATGAAGAAGGAGACTCAAGCCACTATTGTGGAAACTCAGCAGACAGGTGCTGATGAAGTGCAAGAAGGAAACAAGCAAGTAGAGGAGGGGGTTAATGCGATGACTTATGCAAGTGCCTTACAAAAGAACAAGGCTGCAGAGGCTCAAAAAACTCAAGGCAACAACAACAATGCATCAGTTGTGACTACTAGTCTTCCTGTTCTTCAGGAGAACTCTGCTCCCCATACAAAGACTACTAACCATGTTACTAATGAGTTCAAGAATTCACAGTACCAAGCAGCCCAGAAAGGTCCTGTAAAATCTAACTCTAGTACTAGTACCGTGTCCTCAGAAAGATCATATAACAGTGGTCCGCGGAGGACTAATGGGCCAGAACAAAAGTACCATGGGAATGGTAGAAGGGTTACTAATGGTGGTGGCAATGGATCTGGCCAAAAGTACCATGGGAATGGAAGAAGGGTTACTAATGGTGGTAATGGCTTCAGCCAAAGATATTATGGTAATGGAAGGGTTACTAATAAGATTGGTCCAGAGAATCAGAAAAAAGAAGCAAAACCAAAGCCTGTTATTGATGCCGAGGGGTGGCAACTGGTAGAGTATCGGAGTGGAAGGAGAGGCGAGAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

415

Amino Acids

44.97

Weight (kDa)

9.82

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39740 AT2G39740 AT2G39740
fragaria_vesca	FvH4_7g23070 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071 FvH4_7g23071
malus_domestica	MD01G1139300.v1.1
prunus_persica	Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1 Prupe.2G239800_v2.0.a1
pyrus_communis	pycom01g15990
rosa_chinensis	RchiOBHm_Chr1g0368311 RchiOBHm_Chr1g0368321
rosa_laevigata	RLG00000027220 RLG00000027221
rosa_multiflora	Rmu_sc0002709.1_g000049 Rmu_sc0009391.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288650 Rroxscaffold_4G00288660
rosa_rugosa	Rorug01G0340200 Rorug01G0340300 Rorug01G0340400 Rorug01G0340500 Rorug01G0340600 Rorug01G0340700 Rorug01G0340800 Rorug01G0340900 Rorug01G0341000 Rorug01G0341100
rosa_samantha	Rh1AG347600 Rh1AG347700 Rh1BG310600 Rh1BG310700 Rh1CG326000 Rh1CG326100 Rh1DG342400 Rh1DG342500
rosa_wichuraiana	Rw1G030940 Rw1G030950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	340
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	1 cut(s)	973
AciI	CCGC	4 cut(s)	5, 148, 971, 973
AclWI	GGATC	1 cut(s)	1051
AcoI	YGGCCR	2 cut(s)	385, 1048
AcsI	RAATTY	1 cut(s)	880
AcuI	CTGAAG	2 cut(s)	806, 1084
AfaI	GTAC	7 cut(s)	517, 526, 890, 931, 937, 1001, 1058
AfiI	CCNNNNNNNGG	2 cut(s)	284, 1200
AgsI	TTSAA	3 cut(s)	92, 201, 877
AhdI	GACNNNNNGTC	1 cut(s)	807
AhlI	ACTAGT	3 cut(s)	521, 806, 932
AjnI	CCWGG	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	589, 621
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	88, 323, 413, 425, 491
AluI	AGCT	5 cut(s)	88, 323, 413, 425, 491
Alw21I	GWGCWC	2 cut(s)	144, 183
Alw26I	GTCTC	3 cut(s)	367, 536, 623
AlwI	GGATC	1 cut(s)	1051
AlwNI	CAGNNNCTG	2 cut(s)	494, 668
AoxI	GGCC	3 cut(s)	385, 986, 1048
ApeKI	GCWGC	6 cut(s)	317, 320, 425, 491, 752, 896
ApoI	RAATTY	1 cut(s)	880
AspS9I	GGNCC	4 cut(s)	908, 968, 986, 1145
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	3 cut(s)	908, 968, 1145
BaeI	ACNNNNGTAYC	2 cut(s)	983, 1016
BalI	TGGCCA	2 cut(s)	387, 1050
BanI	GGYRCC	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	1063, 1095
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	144, 183
BbvI	GCAGC	6 cut(s)	304, 332, 412, 478, 739, 908
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	367, 536, 623
BcuI	ACTAGT	3 cut(s)	521, 806, 932
BfaI	CTAG	7 cut(s)	155, 297, 462, 522, 807, 927, 933
BfmI	CTRYAG	2 cut(s)	318, 753
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	7 cut(s)	6, 318, 321, 426, 492, 753, 897
BlsI	GCNGC	7 cut(s)	7, 319, 322, 427, 493, 754, 898
BmcAI	AGTACT	3 cut(s)	517, 526, 931
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	3 cut(s)	908, 968, 1145
BmeRI	GACNNNNNGTC	1 cut(s)	807
BmgT120I	GGNCC	4 cut(s)	908, 968, 986, 1145
BmiI	GGNNCC	2 cut(s)	342, 535
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	800, 1180
BpiI	GAAGAC	1 cut(s)	803
BpmI	CTGGAG	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	618, 756
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	971, 1003, 1060, 1194
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 1200
Bse1I	ACTGG	3 cut(s)	451, 510, 1212
Bse3DI	GCAATG	1 cut(s)	1045
BseBI	CCWGG	1 cut(s)	569
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	4 cut(s)	971, 1003, 1060, 1194
BseLI	CCNNNNNNNGG	2 cut(s)	284, 1200
BseMI	GCAATG	1 cut(s)	1045
BseMII	CTCAG	2 cut(s)	668, 960
BseNI	ACTGG	3 cut(s)	451, 510, 1212
BseRI	GAGGAG	4 cut(s)	65, 86, 131, 716
BseXI	GCAGC	6 cut(s)	304, 332, 412, 478, 739, 908
Bsh1236I	CGCG	1 cut(s)	973
BshFI	GGCC	3 cut(s)	387, 988, 1050
BshNI	GGYRCC	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	144, 183
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	284, 1200
BsmAI	GTCTC	3 cut(s)	367, 536, 623
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	387, 988, 1050
Bsp1286I	GDGCHC	2 cut(s)	144, 183
Bsp143I	GATC	3 cut(s)	371, 953, 1043
Bsp19I	CCATGG	2 cut(s)	1003, 1060
BspACI	CCGC	4 cut(s)	5, 148, 971, 973
BspANI	GGCC	3 cut(s)	387, 988, 1050
BspCNI	CTCAG	2 cut(s)	667, 959
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	973
BspLI	GGNNCC	2 cut(s)	342, 535
BspMAI	CTGCAG	2 cut(s)	322, 757
BspPI	GGATC	1 cut(s)	1051
BspT107I	GGYRCC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	1045
BsrI	ACTGG	3 cut(s)	451, 510, 1212
BssECI	CCNNGG	4 cut(s)	971, 1003, 1060, 1194
BssMI	GATC	3 cut(s)	371, 953, 1043
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	1003, 1060
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	3 cut(s)	888, 940, 965
Bst6I	CTCTTC	2 cut(s)	59, 87
BstC8I	GCNNGC	3 cut(s)	21, 152, 532
BstDEI	CTNAG	2 cut(s)	654, 946
BstDSI	CCRYGG	3 cut(s)	971, 1003, 1060
BstFNI	CGCG	1 cut(s)	973
BstKTI	GATC	3 cut(s)	374, 956, 1046
BstMAI	GTCTC	3 cut(s)	367, 536, 623
BstMBI	GATC	3 cut(s)	371, 953, 1043
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 281, 326, 410, 758
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	2 cut(s)	318, 753
BstUI	CGCG	1 cut(s)	973
BstV1I	GCAGC	6 cut(s)	304, 332, 412, 478, 739, 908
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	2 cut(s)	371, 1043
BstXI	CCANNNNNNTGG	3 cut(s)	646, 1010, 1067
BstYI	RGATCY	2 cut(s)	371, 1043
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	387, 988, 1050
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	3 cut(s)	971, 1003, 1060
BtgZI	GCGATG	1 cut(s)	731
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	3 cut(s)	342, 459, 970
Cac8I	GCNNGC	3 cut(s)	21, 152, 532
CaiI	CAGNNNCTG	2 cut(s)	494, 668
Cfr13I	GGNCC	4 cut(s)	908, 968, 986, 1145
Cfr42I	CCGCGG	1 cut(s)	974
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	7 cut(s)	516, 525, 889, 930, 936, 1000, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	5 cut(s)	151, 272, 860, 1004, 1061
CviQI	GTAC	7 cut(s)	516, 525, 889, 930, 936, 1000, 1057
DdeI	CTNAG	2 cut(s)	654, 946
DpnI	GATC	3 cut(s)	373, 955, 1045
DpnII	GATC	3 cut(s)	371, 953, 1043
DriI	GACNNNNNGTC	1 cut(s)	807
EaeI	YGGCCR	2 cut(s)	385, 1048
Eam1104I	CTCTTC	2 cut(s)	59, 87
Eam1105I	GACNNNNNGTC	1 cut(s)	807
EarI	CTCTTC	2 cut(s)	59, 87
Eco130I	CCWWGG	2 cut(s)	1003, 1060
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	908, 968, 1145
Eco57I	CTGAAG	2 cut(s)	806, 1084
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	1003, 1060
EcoT22I	ATGCAT	1 cut(s)	793
ErhI	CCWWGG	2 cut(s)	1003, 1060
FaeI	CATG	5 cut(s)	154, 275, 863, 1007, 1064
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	5 cut(s)	150, 271, 859, 1003, 1060
Fnu4HI	GCNGC	7 cut(s)	6, 318, 321, 426, 492, 753, 897
Fsp4HI	GCNGC	7 cut(s)	6, 318, 321, 426, 492, 753, 897
FspBI	CTAG	7 cut(s)	155, 297, 462, 522, 807, 927, 933
GluI	GCNGC	7 cut(s)	6, 318, 321, 426, 492, 753, 897
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	3 cut(s)	387, 988, 1050
Hin1II	CATG	5 cut(s)	154, 275, 863, 1007, 1064
HincII	GTYRAC	1 cut(s)	482
HindII	GTYRAC	1 cut(s)	482
HinfI	GANTC	2 cut(s)	631, 1153
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	5 cut(s)	376, 949, 1158, 1221, 1247
Hpy188III	TCNNGA	4 cut(s)	201, 824, 877, 1148
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	7 cut(s)	559, 619, 677, 1011, 1068, 1119, 1221
HpyCH4III	ACNGT	3 cut(s)	888, 940, 965
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	6 cut(s)	320, 353, 679, 728, 755, 791
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 281, 326, 410, 758
HpyF3I	CTNAG	2 cut(s)	654, 946
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	5 cut(s)	154, 275, 863, 1007, 1064
KspI	CCGCGG	1 cut(s)	974
Kzo9I	GATC	3 cut(s)	371, 953, 1043
LmnI	GCTCC	4 cut(s)	139, 418, 539, 841
Lsp1109I	GCAGC	6 cut(s)	304, 332, 412, 478, 739, 908
LweI	GCATC	2 cut(s)	800, 1180
MaeI	CTAG	7 cut(s)	155, 297, 462, 522, 807, 927, 933
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	7 cut(s)	301, 496, 799, 862, 1021, 1078, 1129
MalI	GATC	3 cut(s)	373, 955, 1045
MboI	GATC	3 cut(s)	371, 953, 1043
MflI	RGATCY	2 cut(s)	371, 1043
MhlI	GDGCHC	2 cut(s)	144, 183
MlsI	TGGCCA	2 cut(s)	387, 1050
MluCI	AATT	2 cut(s)	345, 880
MluNI	TGGCCA	2 cut(s)	387, 1050
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	538
Mox20I	TGGCCA	2 cut(s)	387, 1050
Mph1103I	ATGCAT	1 cut(s)	793
MscI	TGGCCA	2 cut(s)	387, 1050
MseI	TTAA	2 cut(s)	189, 711
MslI	CAYNNNNRTG	4 cut(s)	155, 644, 1008, 1065
Msp20I	TGGCCA	2 cut(s)	387, 1050
MspA1I	CMGCKG	2 cut(s)	491, 973
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MvnI	CGCG	1 cut(s)	973
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 281, 326, 410, 758
NcoI	CCATGG	2 cut(s)	1003, 1060
NdeII	GATC	3 cut(s)	371, 953, 1043
NlaIII	CATG	5 cut(s)	154, 275, 863, 1007, 1064
NlaIV	GGNNCC	2 cut(s)	342, 535
NmeAIII	GCCGAG	1 cut(s)	1219
NmuCI	GTSAC	1 cut(s)	799
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	1 cut(s)	154
OliI	CACNNNNGTG	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	1153
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	7 cut(s)	7, 319, 322, 427, 493, 754, 898
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	908
PsiI	TTATAA	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	342, 535
PspPI	GGNCC	4 cut(s)	908, 968, 986, 1145
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	2 cut(s)	322, 757
PstNI	CAGNNNCTG	2 cut(s)	494, 668
PsuI	RGATCY	2 cut(s)	371, 1043
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	7 cut(s)	517, 526, 890, 931, 937, 1001, 1058
RsaNI	GTAC	7 cut(s)	516, 525, 889, 930, 936, 1000, 1057
RseI	CAYNNNNRTG	4 cut(s)	155, 644, 1008, 1065
SacII	CCGCGG	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	189, 711
SatI	GCNGC	7 cut(s)	6, 318, 321, 426, 492, 753, 897
Sau3AI	GATC	3 cut(s)	371, 953, 1043
Sau96I	GGNCC	4 cut(s)	908, 968, 986, 1145
ScaI	AGTACT	3 cut(s)	517, 526, 931
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	2 cut(s)	144, 183
SetI	ASST	9 cut(s)	90, 147, 245, 325, 415, 427, 493, 667, 910
SfaNI	GCATC	2 cut(s)	800, 1180
SfcI	CTRYAG	2 cut(s)	318, 753
Sfr303I	CCGCGG	1 cut(s)	974
SgrBI	CCGCGG	1 cut(s)	974
SinI	GGWCC	3 cut(s)	908, 968, 1145
SmiMI	CAYNNNNRTG	4 cut(s)	155, 644, 1008, 1065
SmlI	CTYRAG	2 cut(s)	633, 771
SmoI	CTYRAG	2 cut(s)	633, 771
SpeI	ACTAGT	3 cut(s)	521, 806, 932
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	2 cut(s)	345, 880
SsiI	CCGC	4 cut(s)	5, 148, 971, 973
SspMI	CTAG	7 cut(s)	155, 297, 462, 522, 807, 927, 933
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	2 cut(s)	1003, 1060
TaaI	ACNGT	3 cut(s)	888, 940, 965
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	345, 880
TatI	WGTACW	3 cut(s)	515, 524, 929
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	1153
Tru1I	TTAA	2 cut(s)	189, 711
Tru9I	TTAA	2 cut(s)	189, 711
TscAI	CASTG	3 cut(s)	342, 459, 970
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	6 cut(s)	317, 320, 425, 491, 752, 896
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	635, 687
TspRI	CASTG	3 cut(s)	342, 459, 970
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	908, 968, 1145
XapI	RAATTY	1 cut(s)	880
XceI	RCATGY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1058, 1112
XspI	CTAG	7 cut(s)	155, 297, 462, 522, 807, 927, 933
ZrmI	AGTACT	3 cut(s)	517, 526, 931
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.