Rorug01G0341100

Poly(A) RNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001926
Physical Location & Seq
Forward (+)
45929306 .. 45937029
7724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0341100.1

Sequence Viewer

Length: 327 bp
ATGGAAGTCATCAACAAACATAACACAGTTCAACAGCTACTAACTGTGGAGCAAGAAGTTCAGCGGATTTTGAATGCTTCCAGAAATGCTAAAACGGCTAAACTAAAACAAGCTAAAGAGGAAGCTGAGAAGGAGAATGCTGATTTCAATGCTCAAATGGAAGTTGACTTTCAGAGAAAACATGCAGAGGGAGGTGGACATTCAGGTCCTCTGAAGAGAATTGAGCAAGAGACAGAGGCAAAGATCCATCATTTGAAGATTGATGCTGCAAGAATATCAAATGACATTGTGCGGATGCTTTTGGAATATACAACTGTGACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

108

Amino Acids

12.32

Weight (kDa)

6.52

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_G PF03179 6 - 105 5e-21 Vacuolar (H+)-ATPase G subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 204
AciI CCGC 2 cut(s) 64, 292
AclWI GGATC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 32, 73, 148, 256
AluBI AGCT 3 cut(s) 37, 113, 125
AluI AGCT 3 cut(s) 37, 113, 125
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 2 cut(s) 253, 285
BseGI GGATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 2 cut(s) 79, 142
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 64, 292
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 238
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 28, 46, 316
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BtsCI GGATG 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 1 cut(s) 182
CviJI RGCY 4 cut(s) 37, 98, 113, 125
CviKI_1 RGCY 4 cut(s) 37, 98, 113, 125
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DrdI GACNNNNNNGTC 1 cut(s) 204
DseDI GACNNNNNNGTC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 206
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 21, 183, 309
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 185
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 166, 197
Hpy188I TCNGA 2 cut(s) 174, 213
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 166, 197
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 28, 46, 316
HpyCH4V TGCA 2 cut(s) 185, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 2 cut(s) 94, 189
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 253, 285
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 226, 268
MflI RGATCY 1 cut(s) 243
MluCI AATT 1 cut(s) 219
MnlI CCTC 5 cut(s) 112, 181, 185, 219, 229
MspA1I CMGCKG 1 cut(s) 64
Mva1269I GAATGC 2 cut(s) 79, 142
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 185
PctI GAATGC 2 cut(s) 79, 142
PkrI GCNGC 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 243
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 206
SetI ASST 5 cut(s) 39, 115, 127, 196, 208
SfaNI GCATC 2 cut(s) 253, 285
SgeI CNNG 7 cut(s) 65, 93, 122, 194, 216, 239, 282
SinI GGWCC 1 cut(s) 206
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 64, 292
TaaI ACNGT 3 cut(s) 28, 46, 316
TasI AATT 1 cut(s) 219
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.